Mercurial > repos > iuc > package_tophat_2_1_0

changeset 0:ed92d4c8e7f6 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
author iuc
date Mon, 09 May 2016 10:33:10 -0400
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 37 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon May 09 10:33:10 2016 -0400
@@ -0,0 +1,37 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="tophat" version="2.1.0">
+        <install version="1.0">
+            <actions_group>
+                <actions architecture="x86_64" os="linux">
+                    <action type="download_by_url" sha256sum="8579764a5d4cf2c6c94f8567cd94218882bf993a9a9eab1f9744e53c801d4a2f">https://ccb.jhu.edu/software/tophat/downloads/tophat-2.1.0.Linux_x86_64.tar.gz</action>
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>
+                        <destination_directory>$INSTALL_DIR</destination_directory>
+                    </action>
+                    <action type="set_environment">
+                        <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
+                    </action>
+                </actions>
+                <actions architecture="x86_64" os="darwin">
+                    <action type="download_by_url" sha256sum="cc1202824b3f15c41e145fe0d64f36ef7a2ab169530c5a26cafe8a3819f57b10">https://ccb.jhu.edu/software/tophat/downloads/tophat-2.1.0.OSX_x86_64.tar.gz</action>
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>
+                        <destination_directory>$INSTALL_DIR</destination_directory>
+                    </action>
+                    <action type="set_environment">
+                        <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
+                    </action>
+                </actions>
+                <actions>
+                    <action type="download_by_url" sha256sum="e7fa2b170408e785e4fafd0bccf4ecfab5151c480a2438dffa42183cfda71f99">https://ccb.jhu.edu/software/tophat/downloads/tophat-2.1.0.tar.gz</action>
+                    <action type="autoconf"/>
+                </actions>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions_group>
+        </install>
+        <readme />
+    </package>
+</tool_dependency>