Mercurial > repos > iuc > package_tpp_4_6_3
comparison tool_dependencies.xml @ 2:aa519f1dda68
Can not rely on echo -e behavior
author | Jim Johnson <jj@umn.edu> |
---|---|
date | Thu, 09 Oct 2014 06:55:57 -0500 |
parents | 0bce36ee6bf2 |
children | 679b2c6a6e19 |
comparison
equal
deleted
inserted
replaced
1:0bce36ee6bf2 | 2:aa519f1dda68 |
---|---|
43 | 43 |
44 <!-- Change deprecated CGI endform to end_form --> | 44 <!-- Change deprecated CGI endform to end_form --> |
45 <action type="shell_command">sed -i.orig 's/endform/end_form/' TPP-4.6.3/trans_proteomic_pipeline/CGI/tpp_gui/tpp_gui.pl</action> | 45 <action type="shell_command">sed -i.orig 's/endform/end_form/' TPP-4.6.3/trans_proteomic_pipeline/CGI/tpp_gui/tpp_gui.pl</action> |
46 | 46 |
47 <action type="change_directory">./TPP-4.6.3/trans_proteomic_pipeline/src/</action> | 47 <action type="change_directory">./TPP-4.6.3/trans_proteomic_pipeline/src/</action> |
48 <action type="shell_command">echo 'TPP_ROOT=$INSTALL_DIR/tpp/' > Makefile.config.incl</action> | 48 <action type="shell_command">echo "TPP_ROOT=$INSTALL_DIR/" > Makefile.config.incl</action> |
49 <action type="shell_command">echo 'TPP_WEB=/tpp/' >> Makefile.config.incl</action> | 49 <action type="shell_command">echo "TPP_WEB=/tpp/" >> Makefile.config.incl</action> |
50 <action type="shell_command">echo 'CGI_USER_DIR=$INSTALL_DIR/cgi-bin/' >> Makefile.config.incl</action> | 50 <action type="shell_command">echo "XSLT_PROC=/usr/bin/xsltproc" >> Makefile.config.incl</action> |
51 | 51 <action type="shell_command">echo "CGI_USER_DIR=$INSTALL_DIR/cgi-bin/" >> Makefile.config.incl</action> |
52 <action type="shell_command">echo "TPP_ROOT=$INSTALL_DIR/\nTPP_WEB=/tpp/\nXSLT_PROC=/usr/bin/xsltproc\nCGI_USERS_DIR=$INSTALL_DIR/cgi-bin/" > "Makefile.config.incl"</action> | |
53 | |
54 | 52 |
55 <action type="shell_command">sed -i -e 's/qw(.*) /(&) /' ../CGI/show_nspbin.pl</action> | 53 <action type="shell_command">sed -i -e 's/qw(.*) /(&) /' ../CGI/show_nspbin.pl</action> |
56 <action type="shell_command">sed -i -e 's/qw(.*) /(&) /' ../perl/exporTPP.pl</action> | 54 <action type="shell_command">sed -i -e 's/qw(.*) /(&) /' ../perl/exporTPP.pl</action> |
57 <action type="shell_command">echo '' > ../perl/tpp_models.pl</action> | 55 <action type="shell_command">echo '' > ../perl/tpp_models.pl</action> |
58 | 56 |