Mercurial > repos > iuc > package_tpp_4_6_3

diff tool_dependencies.xml @ 2:aa519f1dda68

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Can not rely on echo -e behavior
author Jim Johnson <jj@umn.edu>
date Thu, 09 Oct 2014 06:55:57 -0500
parents 0bce36ee6bf2
children 679b2c6a6e19
line wrap: on
line diff
--- a/tool_dependencies.xml	Fri Oct 03 07:59:16 2014 -0500
+++ b/tool_dependencies.xml	Thu Oct 09 06:55:57 2014 -0500
@@ -45,12 +45,10 @@
                 <action type="shell_command">sed -i.orig 's/endform/end_form/' TPP-4.6.3/trans_proteomic_pipeline/CGI/tpp_gui/tpp_gui.pl</action>
 
                 <action type="change_directory">./TPP-4.6.3/trans_proteomic_pipeline/src/</action>
-                <action type="shell_command">echo 'TPP_ROOT=$INSTALL_DIR/tpp/' &gt; Makefile.config.incl</action>
-                <action type="shell_command">echo 'TPP_WEB=/tpp/' &gt;&gt; Makefile.config.incl</action>
-                <action type="shell_command">echo 'CGI_USER_DIR=$INSTALL_DIR/cgi-bin/' &gt;&gt; Makefile.config.incl</action>
-
-                <action type="shell_command">echo "TPP_ROOT=$INSTALL_DIR/\nTPP_WEB=/tpp/\nXSLT_PROC=/usr/bin/xsltproc\nCGI_USERS_DIR=$INSTALL_DIR/cgi-bin/" &gt; "Makefile.config.incl"</action>
-
+                <action type="shell_command">echo "TPP_ROOT=$INSTALL_DIR/" &gt; Makefile.config.incl</action>
+                <action type="shell_command">echo "TPP_WEB=/tpp/" &gt;&gt; Makefile.config.incl</action>
+                <action type="shell_command">echo "XSLT_PROC=/usr/bin/xsltproc" &gt;&gt; Makefile.config.incl</action>
+                <action type="shell_command">echo "CGI_USER_DIR=$INSTALL_DIR/cgi-bin/" &gt;&gt; Makefile.config.incl</action>
 
                 <action type="shell_command">sed -i -e 's/qw(.*) /(&amp;) /' ../CGI/show_nspbin.pl</action>
                 <action type="shell_command">sed -i -e 's/qw(.*) /(&amp;) /' ../perl/exporTPP.pl</action>