Mercurial > repos > iuc > package_trinity_2_1_1
comparison tool_dependencies.xml @ 8:1585b0b46b84 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_1_1 commit 104fdfbf4955137a08446284b0fcf3e6e5b9b24b
| author | iuc |
|---|---|
| date | Mon, 11 Jul 2016 04:30:25 -0400 |
| parents | cec8b7f159c5 |
| children |
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| 7:cec8b7f159c5 | 8:1585b0b46b84 |
|---|---|
| 116 https://depot.galaxyproject.org/software/Biobase/Biobase_2.30.0_src_all.tar.gz | 116 https://depot.galaxyproject.org/software/Biobase/Biobase_2.30.0_src_all.tar.gz |
| 117 </package> | 117 </package> |
| 118 </action> | 118 </action> |
| 119 | 119 |
| 120 <action type="shell_command">sed -i.bak -e 's/-ltinfo//' trinity-plugins/Makefile</action> <!-- tinfo is included in ncurses lib--> | 120 <action type="shell_command">sed -i.bak -e 's/-ltinfo//' trinity-plugins/Makefile</action> <!-- tinfo is included in ncurses lib--> |
| 121 <action type="shell_command">sed -i.bak 's/\(trinity_essentials:.*\) samtools/\1/' trinity-plugins/Makefile</action> <!-- samtools does not compile with package_zlib_1_2_8, but does not need to be built --> | |
| 121 <action type="shell_command">sed -i.bak -e '/tar xvf samtools-0.1.19.tar.bz2/a \\tsed -i.bak -e "s|-lcurses|-lncurses|" samtools-0.1.19/Makefile samtools-0.1.19/Makefile' trinity-plugins/Makefile</action> <!-- ncurses instead of curses --> | 122 <action type="shell_command">sed -i.bak -e '/tar xvf samtools-0.1.19.tar.bz2/a \\tsed -i.bak -e "s|-lcurses|-lncurses|" samtools-0.1.19/Makefile samtools-0.1.19/Makefile' trinity-plugins/Makefile</action> <!-- ncurses instead of curses --> |
| 122 | 123 |
| 123 <action type="shell_command">make</action> | 124 <action type="shell_command">make</action> |
| 124 <action type="shell_command">make plugins</action> | 125 <action type="shell_command">make plugins</action> |
| 125 | 126 |