comparison macros.xml @ 1:03da093291cf draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/paffy commit 9eb0e8172b3ac29d96aa9f28a89bc1d60fc11ec6

0:0f451c5e1128

        <requirements>
            <requirement type="package" version="@TOOL_VERSION@">cactus</requirement>
        </requirements>
    </xml>
    <token name="@TOOL_VERSION@">2.9.9</token>
    <token name="@VERSION_SUFFIX@">0</token>
    <token name="@PROFILE@">25.1</token>
    <token name="@UNCOMPRESS_PAF@"><![CDATA[
        #if $input_paf.is_of_type('paf.gz')
            gunzip -c '$input_paf' |
        #else

        #for $i, $fasta_file in enumerate($input_fasta):
            'input_${i}.fasta'
        #end for
        ]]>
    </token>
    <token name="@COMPRESS_FASTA@"><![CDATA[
        #if $compression.type == 'gz':
            | gzip -c > '$out_file'
        #else if $compression.type == 'bz2':
            | bzip2 -c > '$out_file'
        #else:
            > '$out_file'
        #end if
        ]]>
    </token>
    <xml name="stdio">
        <stdio>
            <!-- Anything other than zero is an error -->
            <exit_code range="1:"/>
            <exit_code range=":-1"/>

                <option value="gz">Compress output to .gz</option>
            </param>
            <when value=""/>
            <when value="gz"/>
        </conditional>
    </xml> 
    <xml name="params_conditional_compression_fasta">	
        <conditional name="compression">
            <param name="type" type="select" label="Compress output">
                <option value="" selected="true">Don't compress output (default)</option>
                <option value="gz">Compress output to .gz</option>
                <option value="bz2">Compress output to .bz2</option>
            </param>
            <when value=""/>
            <when value="gz"/>
            <when value="bz2"/>
        </conditional>
    </xml> 
    <xml name="creator">
        <creator>
            <person givenName="Niklas" familyName="Mayle" url="https://github.com/Maed0x"/>
            <person givenName="Saim" familyName="Momin" url="https://github.com/SaimMomin12"/>
            <organization name="Galaxy Europe" url="https://galaxyproject.org/eu/"/>

1:03da093291cf

        <requirements>
            <requirement type="package" version="@TOOL_VERSION@">cactus</requirement>
        </requirements>
    </xml>
    <token name="@TOOL_VERSION@">2.9.9</token>
    <token name="@VERSION_SUFFIX@">1</token>
    <token name="@PROFILE@">25.1</token>
    <token name="@UNCOMPRESS_PAF@"><![CDATA[
        #if $input_paf.is_of_type('paf.gz')
            gunzip -c '$input_paf' |
        #else

        #for $i, $fasta_file in enumerate($input_fasta):
            'input_${i}.fasta'
        #end for
        ]]>
    </token>
    <xml name="stdio">
        <stdio>
            <!-- Anything other than zero is an error -->
            <exit_code range="1:"/>
            <exit_code range=":-1"/>

                <option value="gz">Compress output to .gz</option>
            </param>
            <when value=""/>
            <when value="gz"/>
        </conditional>
    </xml>
    <xml name="creator">
        <creator>
            <person givenName="Niklas" familyName="Mayle" url="https://github.com/Maed0x"/>
            <person givenName="Saim" familyName="Momin" url="https://github.com/SaimMomin12"/>
            <organization name="Galaxy Europe" url="https://galaxyproject.org/eu/"/>