annotate test-data/pairs_output.stats @ 5:56bb29747b4d draft default tip

planemo upload for repository https://github.com/open2c/pairtools commit 13aa776596c927adff29d936740ac80f0e37375d
author iuc
date Tue, 21 May 2024 16:03:55 +0000
parents 55a53b5e308d
children
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ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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1 total 592
ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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2 total_unmapped 4
ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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3 total_single_sided_mapped 147
ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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4 total_mapped 441
ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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5 total_dups 0
ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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6 total_nodups 441
ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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7 cis 441
ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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8 trans 0
ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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9 pair_types/UU 405
ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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10 pair_types/NR 119
ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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11 pair_types/MU 21
ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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12 pair_types/UR 19
ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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13 pair_types/RU 17
ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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14 pair_types/MR 6
ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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15 pair_types/MM 4
ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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16 pair_types/NU 1
ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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17 cis_1kb+ 75
ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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18 cis_2kb+ 72
ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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19 cis_4kb+ 70
ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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20 cis_10kb+ 67
ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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21 cis_20kb+ 61
ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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22 cis_40kb+ 61
ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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23 summary/frac_cis 1.0
ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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24 summary/frac_cis_1kb+ 0.17006802721088435
ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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25 summary/frac_cis_2kb+ 0.16326530612244897
ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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26 summary/frac_cis_4kb+ 0.15873015873015872
ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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27 summary/frac_cis_10kb+ 0.15192743764172337
ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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28 summary/frac_cis_20kb+ 0.1383219954648526
ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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29 summary/frac_cis_40kb+ 0.1383219954648526
ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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30 summary/frac_dups 0.0
ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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31 summary/complexity_naive nan
4
55a53b5e308d planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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32 summary/dist_freq_convergence/convergence_dist 421697
55a53b5e308d planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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33 summary/dist_freq_convergence/strands_w_max_convergence_dist ++
55a53b5e308d planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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34 summary/dist_freq_convergence/convergence_rel_diff_threshold 0.05
55a53b5e308d planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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35 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/++ 25
55a53b5e308d planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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36 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/-- 26
55a53b5e308d planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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37 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/-+ 7
55a53b5e308d planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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38 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/+- 383
55a53b5e308d planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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39 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist_all_strands 441
55a53b5e308d planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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40 summary/dist_freq_convergence/n_cis_pairs_above_convergence_dist_all_strands 0
55a53b5e308d planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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41 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/++ 0.05668934240362812
55a53b5e308d planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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42 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/-- 0.05895691609977324
55a53b5e308d planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 2
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43 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/-+ 0.015873015873015872
55a53b5e308d planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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44 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/+- 0.8684807256235828
55a53b5e308d planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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45 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist_all_strands 1.0
55a53b5e308d planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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46 summary/dist_freq_convergence/frac_cis_in_cis_above_convergence_dist_all_strands 0.0
55a53b5e308d planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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47 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/++ 0.05668934240362812
55a53b5e308d planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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48 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/-- 0.05895691609977324
55a53b5e308d planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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49 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/-+ 0.015873015873015872
55a53b5e308d planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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50 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/+- 0.8684807256235828
55a53b5e308d planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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51 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist_all_strands 1.0
55a53b5e308d planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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52 summary/dist_freq_convergence/frac_total_mapped_in_cis_above_convergence_dist_all_strands 0.0
55a53b5e308d planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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53 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/++ 0.05668934240362812
55a53b5e308d planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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54 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/-- 0.05895691609977324
55a53b5e308d planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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55 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/-+ 0.015873015873015872
55a53b5e308d planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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56 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/+- 0.8684807256235828
55a53b5e308d planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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57 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist_all_strands 1.0
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58 summary/dist_freq_convergence/frac_total_nodups_in_cis_above_convergence_dist_all_strands 0.0
2
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59 chrom_freq/Test_seq/Test_seq 441
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60 dist_freq/0-1/+- 0
ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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61 dist_freq/0-1/-+ 0
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62 dist_freq/0-1/-- 0
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63 dist_freq/0-1/++ 0
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64 dist_freq/1-2/+- 0
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65 dist_freq/1-2/-+ 0
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66 dist_freq/1-2/-- 0
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67 dist_freq/1-2/++ 0
ae537f4d4b93 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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68 dist_freq/2-3/+- 0
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69 dist_freq/2-3/-+ 0
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70 dist_freq/2-3/-- 0
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71 dist_freq/2-3/++ 0
4
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72 dist_freq/3-4/+- 0
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73 dist_freq/3-4/-+ 0
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74 dist_freq/3-4/-- 0
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75 dist_freq/3-4/++ 0
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76 dist_freq/4-6/+- 0
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77 dist_freq/4-6/-+ 0
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78 dist_freq/4-6/-- 0
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79 dist_freq/4-6/++ 0
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80 dist_freq/6-7/+- 0
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81 dist_freq/6-7/-+ 0
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82 dist_freq/6-7/-- 0
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83 dist_freq/6-7/++ 0
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84 dist_freq/7-10/+- 0
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85 dist_freq/7-10/-+ 0
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86 dist_freq/7-10/-- 0
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87 dist_freq/7-10/++ 0
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88 dist_freq/10-13/+- 0
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89 dist_freq/10-13/-+ 0
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90 dist_freq/10-13/-- 0
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91 dist_freq/10-13/++ 0
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92 dist_freq/13-18/+- 0
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93 dist_freq/13-18/-+ 0
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94 dist_freq/13-18/-- 0
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95 dist_freq/13-18/++ 0
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iuc
parents: 2
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96 dist_freq/18-24/+- 0
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iuc
parents: 2
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97 dist_freq/18-24/-+ 0
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iuc
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98 dist_freq/18-24/-- 0
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iuc
parents: 2
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99 dist_freq/18-24/++ 0
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iuc
parents: 2
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100 dist_freq/24-32/+- 0
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iuc
parents: 2
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101 dist_freq/24-32/-+ 0
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iuc
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102 dist_freq/24-32/-- 0
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iuc
parents: 2
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103 dist_freq/24-32/++ 0
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iuc
parents: 2
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104 dist_freq/32-42/+- 0
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iuc
parents: 2
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105 dist_freq/32-42/-+ 0
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iuc
parents: 2
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106 dist_freq/32-42/-- 0
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iuc
parents: 2
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107 dist_freq/32-42/++ 0
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iuc
parents: 2
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108 dist_freq/42-56/+- 7
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iuc
parents: 2
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109 dist_freq/42-56/-+ 0
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iuc
parents: 2
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110 dist_freq/42-56/-- 0
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iuc
parents: 2
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111 dist_freq/42-56/++ 0
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iuc
parents: 2
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112 dist_freq/56-75/+- 7
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iuc
parents: 2
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113 dist_freq/56-75/-+ 0
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iuc
parents: 2
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114 dist_freq/56-75/-- 0
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iuc
parents: 2
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115 dist_freq/56-75/++ 0
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iuc
parents: 2
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116 dist_freq/75-100/+- 2
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iuc
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117 dist_freq/75-100/-+ 0
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iuc
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118 dist_freq/75-100/-- 0
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iuc
parents: 2
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119 dist_freq/75-100/++ 0
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iuc
parents: 2
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120 dist_freq/100-133/+- 3
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iuc
parents: 2
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121 dist_freq/100-133/-+ 0
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iuc
parents: 2
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122 dist_freq/100-133/-- 0
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iuc
parents: 2
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123 dist_freq/100-133/++ 0
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iuc
parents: 2
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124 dist_freq/133-178/+- 2
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iuc
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125 dist_freq/133-178/-+ 0
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iuc
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126 dist_freq/133-178/-- 0
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iuc
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127 dist_freq/133-178/++ 0
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iuc
parents: 2
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128 dist_freq/178-237/+- 3
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iuc
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129 dist_freq/178-237/-+ 0
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iuc
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130 dist_freq/178-237/-- 0
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iuc
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131 dist_freq/178-237/++ 0
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iuc
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132 dist_freq/237-316/+- 57
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iuc
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133 dist_freq/237-316/-+ 0
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iuc
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134 dist_freq/237-316/-- 0
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iuc
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135 dist_freq/237-316/++ 0
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iuc
parents: 2
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136 dist_freq/316-422/+- 171
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iuc
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137 dist_freq/316-422/-+ 0
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iuc
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138 dist_freq/316-422/-- 0
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iuc
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139 dist_freq/316-422/++ 0
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iuc
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140 dist_freq/422-562/+- 113
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iuc
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141 dist_freq/422-562/-+ 0
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142 dist_freq/422-562/-- 0
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iuc
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143 dist_freq/422-562/++ 0
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iuc
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144 dist_freq/562-750/+- 0
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iuc
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145 dist_freq/562-750/-+ 0
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iuc
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146 dist_freq/562-750/-- 0
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iuc
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147 dist_freq/562-750/++ 0
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iuc
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148 dist_freq/750-1000/+- 1
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149 dist_freq/750-1000/-+ 0
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150 dist_freq/750-1000/-- 0
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iuc
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151 dist_freq/750-1000/++ 0
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152 dist_freq/1000-1334/+- 0
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153 dist_freq/1000-1334/-+ 0
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154 dist_freq/1000-1334/-- 1
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iuc
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155 dist_freq/1000-1334/++ 0
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iuc
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156 dist_freq/1334-1778/+- 1
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157 dist_freq/1334-1778/-+ 0
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158 dist_freq/1334-1778/-- 0
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iuc
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159 dist_freq/1334-1778/++ 0
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iuc
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160 dist_freq/1778-2371/+- 0
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iuc
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161 dist_freq/1778-2371/-+ 0
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iuc
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162 dist_freq/1778-2371/-- 0
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iuc
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163 dist_freq/1778-2371/++ 1
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iuc
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164 dist_freq/2371-3162/+- 1
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iuc
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165 dist_freq/2371-3162/-+ 0
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iuc
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166 dist_freq/2371-3162/-- 1
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iuc
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167 dist_freq/2371-3162/++ 0
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iuc
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168 dist_freq/3162-4217/+- 0
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169 dist_freq/3162-4217/-+ 0
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iuc
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170 dist_freq/3162-4217/-- 0
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iuc
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171 dist_freq/3162-4217/++ 0
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iuc
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172 dist_freq/4217-5623/+- 0
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iuc
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173 dist_freq/4217-5623/-+ 0
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iuc
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174 dist_freq/4217-5623/-- 0
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iuc
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175 dist_freq/4217-5623/++ 0
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iuc
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176 dist_freq/5623-7499/+- 0
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iuc
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177 dist_freq/5623-7499/-+ 0
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iuc
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178 dist_freq/5623-7499/-- 0
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iuc
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179 dist_freq/5623-7499/++ 1
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iuc
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180 dist_freq/7499-10000/+- 2
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iuc
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181 dist_freq/7499-10000/-+ 0
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182 dist_freq/7499-10000/-- 0
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iuc
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183 dist_freq/7499-10000/++ 0
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iuc
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184 dist_freq/10000-13335/+- 1
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iuc
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185 dist_freq/10000-13335/-+ 1
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186 dist_freq/10000-13335/-- 0
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iuc
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187 dist_freq/10000-13335/++ 1
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iuc
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188 dist_freq/13335-17783/+- 1
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iuc
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189 dist_freq/13335-17783/-+ 1
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iuc
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190 dist_freq/13335-17783/-- 0
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iuc
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191 dist_freq/13335-17783/++ 0
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iuc
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192 dist_freq/17783-23714/+- 1
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iuc
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193 dist_freq/17783-23714/-+ 0
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iuc
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194 dist_freq/17783-23714/-- 0
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iuc
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195 dist_freq/17783-23714/++ 0
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iuc
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196 dist_freq/23714-31623/+- 0
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348 chromsizes/Test_seq 450060