Mercurial > repos > iuc > pairtools_dedup
comparison dedup.xml @ 4:55a53b5e308d draft
planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
author | iuc |
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date | Tue, 30 Apr 2024 12:02:29 +0000 |
parents | f8c1d2a93d43 |
children |
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3:5412142130ad | 4:55a53b5e308d |
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18 --nproc-in \${GALAXY_SLOTS:-4} | 18 --nproc-in \${GALAXY_SLOTS:-4} |
19 --nproc-out \${GALAXY_SLOTS:-4} | 19 --nproc-out \${GALAXY_SLOTS:-4} |
20 ]]></command> | 20 ]]></command> |
21 <inputs> | 21 <inputs> |
22 <param name="pairs_path" type="data" format="4dn_pairs,4dn_pairsam" label="Input pairs file" help="Input triu-flipped sorted .pairs or .pairsam file"/> | 22 <param name="pairs_path" type="data" format="4dn_pairs,4dn_pairsam" label="Input pairs file" help="Input triu-flipped sorted .pairs or .pairsam file"/> |
23 <param argument="--mark-dups" type="boolean" truevalue="--mark-dups" falsevalue="" checked="False" label="Duplicate pairs are marked as DD in pair_type and as a duplicate in the SAM entries"/> | 23 <param argument="--mark-dups" type="boolean" truevalue="--mark-dups" falsevalue="" checked="True" label="Duplicate pairs are marked as DD in pair_type and as a duplicate in the SAM entries"/> |
24 <param argument="--output-dups" type="boolean" truevalue="--output-dups" falsevalue="" checked="False" label="Output file for duplicate pairs"/> | 24 <param argument="--output-dups" type="boolean" truevalue="--output-dups" falsevalue="" checked="False" label="Output file for duplicate pairs"/> |
25 <param argument="--output-stats" type="boolean" truevalue="--output-stats" falsevalue="" checked="False" label="Output file for duplicate statistics"/> | 25 <param argument="--output-stats" type="boolean" truevalue="--output-stats" falsevalue="" checked="False" label="Output file for duplicate statistics"/> |
26 </inputs> | 26 </inputs> |
27 <outputs> | 27 <outputs> |
28 <data name="output_dedup_pairs" format_source="pairs_path" label="${tool.name} on ${on_string}: Deduplicated Pairs"/> | 28 <data name="output_dedup_pairs" format_source="pairs_path" label="${tool.name} on ${on_string}: Deduplicated Pairs"/> |