Mercurial > repos > iuc > pairtools_dedup

comparison test-data/pairs_output.stats @ 2:ae537f4d4b93 draft

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planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
author iuc
date Fri, 05 Apr 2024 10:33:39 +0000
parents
children 55a53b5e308d
comparison
equal deleted inserted replaced
1:ccc7a8e707fb 2:ae537f4d4b93
1 total 592
2 total_unmapped 4
3 total_single_sided_mapped 147
4 total_mapped 441
5 total_dups 0
6 total_nodups 441
7 cis 441
8 trans 0
9 pair_types/UU 405
10 pair_types/NR 119
11 pair_types/MU 21
12 pair_types/UR 19
13 pair_types/RU 17
14 pair_types/MR 6
15 pair_types/MM 4
16 pair_types/NU 1
17 cis_1kb+ 75
18 cis_2kb+ 72
19 cis_4kb+ 70
20 cis_10kb+ 67
21 cis_20kb+ 61
22 cis_40kb+ 61
23 summary/frac_cis 1.0
24 summary/frac_cis_1kb+ 0.17006802721088435
25 summary/frac_cis_2kb+ 0.16326530612244897
26 summary/frac_cis_4kb+ 0.15873015873015872
27 summary/frac_cis_10kb+ 0.15192743764172337
28 summary/frac_cis_20kb+ 0.1383219954648526
29 summary/frac_cis_40kb+ 0.1383219954648526
30 summary/frac_dups 0.0
31 summary/complexity_naive nan
32 chrom_freq/Test_seq/Test_seq 441
33 dist_freq/0-1/+- 0
34 dist_freq/0-1/-+ 0
35 dist_freq/0-1/-- 0
36 dist_freq/0-1/++ 0
37 dist_freq/1-2/+- 0
38 dist_freq/1-2/-+ 0
39 dist_freq/1-2/-- 0
40 dist_freq/1-2/++ 0
41 dist_freq/2-3/+- 0
42 dist_freq/2-3/-+ 0
43 dist_freq/2-3/-- 0
44 dist_freq/2-3/++ 0
45 dist_freq/3-6/+- 0
46 dist_freq/3-6/-+ 0
47 dist_freq/3-6/-- 0
48 dist_freq/3-6/++ 0
49 dist_freq/6-10/+- 0
50 dist_freq/6-10/-+ 0
51 dist_freq/6-10/-- 0
52 dist_freq/6-10/++ 0
53 dist_freq/10-18/+- 0
54 dist_freq/10-18/-+ 0
55 dist_freq/10-18/-- 0
56 dist_freq/10-18/++ 0
57 dist_freq/18-32/+- 0
58 dist_freq/18-32/-+ 0
59 dist_freq/18-32/-- 0
60 dist_freq/18-32/++ 0
61 dist_freq/32-56/+- 7
62 dist_freq/32-56/-+ 0
63 dist_freq/32-56/-- 0
64 dist_freq/32-56/++ 0
65 dist_freq/56-100/+- 9
66 dist_freq/56-100/-+ 0
67 dist_freq/56-100/-- 0
68 dist_freq/56-100/++ 0
69 dist_freq/100-178/+- 5
70 dist_freq/100-178/-+ 0
71 dist_freq/100-178/-- 0
72 dist_freq/100-178/++ 0
73 dist_freq/178-316/+- 60
74 dist_freq/178-316/-+ 0
75 dist_freq/178-316/-- 0
76 dist_freq/178-316/++ 0
77 dist_freq/316-562/+- 284
78 dist_freq/316-562/-+ 0
79 dist_freq/316-562/-- 0
80 dist_freq/316-562/++ 0
81 dist_freq/562-1000/+- 1
82 dist_freq/562-1000/-+ 0
83 dist_freq/562-1000/-- 0
84 dist_freq/562-1000/++ 0
85 dist_freq/1000-1778/+- 1
86 dist_freq/1000-1778/-+ 0
87 dist_freq/1000-1778/-- 1
88 dist_freq/1000-1778/++ 0
89 dist_freq/1778-3162/+- 1
90 dist_freq/1778-3162/-+ 0
91 dist_freq/1778-3162/-- 1
92 dist_freq/1778-3162/++ 1
93 dist_freq/3162-5623/+- 0
94 dist_freq/3162-5623/-+ 0
95 dist_freq/3162-5623/-- 0
96 dist_freq/3162-5623/++ 0
97 dist_freq/5623-10000/+- 2
98 dist_freq/5623-10000/-+ 0
99 dist_freq/5623-10000/-- 0
100 dist_freq/5623-10000/++ 1
101 dist_freq/10000-17783/+- 2
102 dist_freq/10000-17783/-+ 2
103 dist_freq/10000-17783/-- 0
104 dist_freq/10000-17783/++ 1
105 dist_freq/17783-31623/+- 1
106 dist_freq/17783-31623/-+ 0
107 dist_freq/17783-31623/-- 0
108 dist_freq/17783-31623/++ 0
109 dist_freq/31623-56234/+- 0
110 dist_freq/31623-56234/-+ 1
111 dist_freq/31623-56234/-- 21
112 dist_freq/31623-56234/++ 10
113 dist_freq/56234-100000/+- 3
114 dist_freq/56234-100000/-+ 0
115 dist_freq/56234-100000/-- 1
116 dist_freq/56234-100000/++ 3
117 dist_freq/100000-177828/+- 3
118 dist_freq/100000-177828/-+ 3
119 dist_freq/100000-177828/-- 2
120 dist_freq/100000-177828/++ 7
121 dist_freq/177828-316228/+- 4
122 dist_freq/177828-316228/-+ 0
123 dist_freq/177828-316228/-- 0
124 dist_freq/177828-316228/++ 2
125 dist_freq/316228-562341/+- 0
126 dist_freq/316228-562341/-+ 1
127 dist_freq/316228-562341/-- 0
128 dist_freq/316228-562341/++ 0
129 dist_freq/562341-1000000/+- 0
130 dist_freq/562341-1000000/-+ 0
131 dist_freq/562341-1000000/-- 0
132 dist_freq/562341-1000000/++ 0
133 dist_freq/1000000-1778279/+- 0
134 dist_freq/1000000-1778279/-+ 0
135 dist_freq/1000000-1778279/-- 0
136 dist_freq/1000000-1778279/++ 0
137 dist_freq/1778279-3162278/+- 0
138 dist_freq/1778279-3162278/-+ 0
139 dist_freq/1778279-3162278/-- 0
140 dist_freq/1778279-3162278/++ 0
141 dist_freq/3162278-5623413/+- 0
142 dist_freq/3162278-5623413/-+ 0
143 dist_freq/3162278-5623413/-- 0
144 dist_freq/3162278-5623413/++ 0
145 dist_freq/5623413-10000000/+- 0
146 dist_freq/5623413-10000000/-+ 0
147 dist_freq/5623413-10000000/-- 0
148 dist_freq/5623413-10000000/++ 0
149 dist_freq/10000000-17782794/+- 0
150 dist_freq/10000000-17782794/-+ 0
151 dist_freq/10000000-17782794/-- 0
152 dist_freq/10000000-17782794/++ 0
153 dist_freq/17782794-31622777/+- 0
154 dist_freq/17782794-31622777/-+ 0
155 dist_freq/17782794-31622777/-- 0
156 dist_freq/17782794-31622777/++ 0
157 dist_freq/31622777-56234133/+- 0
158 dist_freq/31622777-56234133/-+ 0
159 dist_freq/31622777-56234133/-- 0
160 dist_freq/31622777-56234133/++ 0
161 dist_freq/56234133-100000000/+- 0
162 dist_freq/56234133-100000000/-+ 0
163 dist_freq/56234133-100000000/-- 0
164 dist_freq/56234133-100000000/++ 0
165 dist_freq/100000000-177827941/+- 0
166 dist_freq/100000000-177827941/-+ 0
167 dist_freq/100000000-177827941/-- 0
168 dist_freq/100000000-177827941/++ 0
169 dist_freq/177827941-316227766/+- 0
170 dist_freq/177827941-316227766/-+ 0
171 dist_freq/177827941-316227766/-- 0
172 dist_freq/177827941-316227766/++ 0
173 dist_freq/316227766-562341325/+- 0
174 dist_freq/316227766-562341325/-+ 0
175 dist_freq/316227766-562341325/-- 0
176 dist_freq/316227766-562341325/++ 0
177 dist_freq/562341325-1000000000/+- 0
178 dist_freq/562341325-1000000000/-+ 0
179 dist_freq/562341325-1000000000/-- 0
180 dist_freq/562341325-1000000000/++ 0
181 dist_freq/562341325+/+- 0
182 dist_freq/562341325+/-+ 0
183 dist_freq/562341325+/-- 0
184 dist_freq/562341325+/++ 0
185 chromsizes/Test_seq 450060