Mercurial > repos > iuc > pairtools_dedup

comparison test-data/output_dedup_pairs.stats @ 0:f8c1d2a93d43 draft

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planemo upload for repository https://github.com/open2c/pairtools commit e9ebcf7ac032fafaa445e654b245df679a4bbf18
author iuc
date Thu, 04 Apr 2024 19:40:59 +0000
parents
children 55a53b5e308d
comparison
equal deleted inserted replaced
-1:000000000000 0:f8c1d2a93d43
1 total 1992
2 total_unmapped 914
3 total_single_sided_mapped 287
4 total_mapped 791
5 total_dups 9
6 total_nodups 782
7 cis 597
8 trans 185
9 pair_types/NN 853
10 pair_types/UU 782
11 pair_types/NU 234
12 pair_types/MU 53
13 pair_types/MM 40
14 pair_types/NM 21
15 pair_types/DD 9
16 cis_1kb+ 185
17 cis_2kb+ 171
18 cis_4kb+ 151
19 cis_10kb+ 114
20 cis_20kb+ 80
21 cis_40kb+ 46
22 summary/frac_cis 0.7634271099744245
23 summary/frac_cis_1kb+ 0.23657289002557544
24 summary/frac_cis_2kb+ 0.2186700767263427
25 summary/frac_cis_4kb+ 0.19309462915601022
26 summary/frac_cis_10kb+ 0.14578005115089515
27 summary/frac_cis_20kb+ 0.10230179028132992
28 summary/frac_cis_40kb+ 0.058823529411764705
29 summary/frac_dups 0.011378002528445006
30 summary/complexity_naive 34495.88583157276
31 chrom_freq/chrIV/chrIV 83
32 chrom_freq/chrVII/chrVII 55
33 chrom_freq/chrXV/chrXV 53
34 chrom_freq/chrXIII/chrXIII 46
35 chrom_freq/chrII/chrII 41
36 chrom_freq/chrXVI/chrXVI 40
37 chrom_freq/chrXIV/chrXIV 37
38 chrom_freq/chrX/chrX 37
39 chrom_freq/chrXII/chrXII 36
40 chrom_freq/chrXI/chrXI 36
41 chrom_freq/chrM/chrM 33
42 chrom_freq/chrVIII/chrVIII 30
43 chrom_freq/chrIX/chrIX 22
44 chrom_freq/chrV/chrV 21
45 chrom_freq/chrIII/chrIII 12
46 chrom_freq/chrVI/chrVI 8
47 chrom_freq/chrI/chrI 7
48 chrom_freq/chrVII/chrXV 6
49 chrom_freq/chrIV/chrXII 6
50 chrom_freq/chrIV/chrXIII 6
51 chrom_freq/chrVII/chrXII 6
52 chrom_freq/chrII/chrVII 5
53 chrom_freq/chrXII/chrXIII 5
54 chrom_freq/chrIV/chrX 5
55 chrom_freq/chrX/chrXIV 4
56 chrom_freq/chrII/chrIV 4
57 chrom_freq/chrII/chrXVI 4
58 chrom_freq/chrXIV/chrXVI 4
59 chrom_freq/chrII/chrXIV 4
60 chrom_freq/chrVII/chrXIV 4
61 chrom_freq/chrXI/chrXV 4
62 chrom_freq/chrXI/chrXII 4
63 chrom_freq/chrIV/chrVII 4
64 chrom_freq/chrXIII/chrXV 3
65 chrom_freq/chrXI/chrXVI 3
66 chrom_freq/chrII/chrXIII 3
67 chrom_freq/chrXI/chrXIII 3
68 chrom_freq/chrVII/chrIX 3
69 chrom_freq/chrVIII/chrXIII 3
70 chrom_freq/chrX/chrXII 3
71 chrom_freq/chrX/chrXIII 3
72 chrom_freq/chrXIII/chrXIV 3
73 chrom_freq/chrV/chrXVI 3
74 chrom_freq/chrIV/chrV 3
75 chrom_freq/chrIV/chrVIII 3
76 chrom_freq/chrIV/chrXI 3
77 chrom_freq/chrIV/chrXV 3
78 chrom_freq/chrIV/chrXVI 3
79 chrom_freq/chrXV/chrXVI 3
80 chrom_freq/chrIX/chrXII 3
81 chrom_freq/chrXIII/chrXVI 2
82 chrom_freq/chrX/chrXVI 2
83 chrom_freq/chrIV/chrVI 2
84 chrom_freq/chrIV/chrXIV 2
85 chrom_freq/chrXI/chrXIV 2
86 chrom_freq/chrVII/chrXVI 2
87 chrom_freq/chrIX/chrX 2
88 chrom_freq/chrVII/chrVIII 2
89 chrom_freq/chrIII/chrX 2
90 chrom_freq/chrIX/chrXV 2
91 chrom_freq/chrIII/chrV 2
92 chrom_freq/chrXIV/chrXV 2
93 chrom_freq/chrXII/chrXV 2
94 chrom_freq/chrV/chrX 2
95 chrom_freq/chrI/chrX 2
96 chrom_freq/chrII/chrXV 2
97 chrom_freq/chrII/chrVIII 1
98 chrom_freq/chrXII/chrXIV 1
99 chrom_freq/chrXII/chrXVI 1
100 chrom_freq/chrII/chrX 1
101 chrom_freq/chrI/chrXV 1
102 chrom_freq/chrIII/chrXIII 1
103 chrom_freq/chrII/chrXI 1
104 chrom_freq/chrVI/chrX 1
105 chrom_freq/chrIII/chrVIII 1
106 chrom_freq/chrIX/chrXI 1
107 chrom_freq/chrV/chrM 1
108 chrom_freq/chrV/chrVI 1
109 chrom_freq/chrV/chrXI 1
110 chrom_freq/chrV/chrXIII 1
111 chrom_freq/chrV/chrXIV 1
112 chrom_freq/chrV/chrXV 1
113 chrom_freq/chrVI/chrXI 1
114 chrom_freq/chrVIII/chrXV 1
115 chrom_freq/chrVI/chrXII 1
116 chrom_freq/chrVI/chrXIII 1
117 chrom_freq/chrVI/chrXIV 1
118 chrom_freq/chrVI/chrXVI 1
119 chrom_freq/chrVII/chrXIII 1
120 chrom_freq/chrVIII/chrIX 1
121 chrom_freq/chrVIII/chrXI 1
122 chrom_freq/chrVIII/chrXII 1
123 chrom_freq/chrVI/chrVII 1
124 dist_freq/0-1/+- 0
125 dist_freq/0-1/-+ 0
126 dist_freq/0-1/-- 0
127 dist_freq/0-1/++ 0
128 dist_freq/1-2/+- 0
129 dist_freq/1-2/-+ 0
130 dist_freq/1-2/-- 0
131 dist_freq/1-2/++ 0
132 dist_freq/2-3/+- 0
133 dist_freq/2-3/-+ 0
134 dist_freq/2-3/-- 0
135 dist_freq/2-3/++ 0
136 dist_freq/3-6/+- 0
137 dist_freq/3-6/-+ 1
138 dist_freq/3-6/-- 0
139 dist_freq/3-6/++ 1
140 dist_freq/6-10/+- 0
141 dist_freq/6-10/-+ 0
142 dist_freq/6-10/-- 0
143 dist_freq/6-10/++ 0
144 dist_freq/10-18/+- 0
145 dist_freq/10-18/-+ 0
146 dist_freq/10-18/-- 0
147 dist_freq/10-18/++ 0
148 dist_freq/18-32/+- 0
149 dist_freq/18-32/-+ 0
150 dist_freq/18-32/-- 0
151 dist_freq/18-32/++ 0
152 dist_freq/32-56/+- 0
153 dist_freq/32-56/-+ 0
154 dist_freq/32-56/-- 0
155 dist_freq/32-56/++ 0
156 dist_freq/56-100/+- 0
157 dist_freq/56-100/-+ 1
158 dist_freq/56-100/-- 0
159 dist_freq/56-100/++ 0
160 dist_freq/100-178/+- 7
161 dist_freq/100-178/-+ 2
162 dist_freq/100-178/-- 2
163 dist_freq/100-178/++ 0
164 dist_freq/178-316/+- 334
165 dist_freq/178-316/-+ 9
166 dist_freq/178-316/-- 1
167 dist_freq/178-316/++ 0
168 dist_freq/316-562/+- 34
169 dist_freq/316-562/-+ 7
170 dist_freq/316-562/-- 0
171 dist_freq/316-562/++ 0
172 dist_freq/562-1000/+- 1
173 dist_freq/562-1000/-+ 11
174 dist_freq/562-1000/-- 0
175 dist_freq/562-1000/++ 1
176 dist_freq/1000-1778/+- 0
177 dist_freq/1000-1778/-+ 5
178 dist_freq/1000-1778/-- 6
179 dist_freq/1000-1778/++ 1
180 dist_freq/1778-3162/+- 5
181 dist_freq/1778-3162/-+ 7
182 dist_freq/1778-3162/-- 2
183 dist_freq/1778-3162/++ 0
184 dist_freq/3162-5623/+- 4
185 dist_freq/3162-5623/-+ 4
186 dist_freq/3162-5623/-- 6
187 dist_freq/3162-5623/++ 4
188 dist_freq/5623-10000/+- 9
189 dist_freq/5623-10000/-+ 4
190 dist_freq/5623-10000/-- 9
191 dist_freq/5623-10000/++ 5
192 dist_freq/10000-17783/+- 7
193 dist_freq/10000-17783/-+ 4
194 dist_freq/10000-17783/-- 8
195 dist_freq/10000-17783/++ 10
196 dist_freq/17783-31623/+- 9
197 dist_freq/17783-31623/-+ 4
198 dist_freq/17783-31623/-- 8
199 dist_freq/17783-31623/++ 5
200 dist_freq/31623-56234/+- 6
201 dist_freq/31623-56234/-+ 4
202 dist_freq/31623-56234/-- 7
203 dist_freq/31623-56234/++ 10
204 dist_freq/56234-100000/+- 2
205 dist_freq/56234-100000/-+ 1
206 dist_freq/56234-100000/-- 5
207 dist_freq/56234-100000/++ 5
208 dist_freq/100000-177828/+- 3
209 dist_freq/100000-177828/-+ 1
210 dist_freq/100000-177828/-- 1
211 dist_freq/100000-177828/++ 2
212 dist_freq/177828-316228/+- 3
213 dist_freq/177828-316228/-+ 0
214 dist_freq/177828-316228/-- 2
215 dist_freq/177828-316228/++ 3
216 dist_freq/316228-562341/+- 0
217 dist_freq/316228-562341/-+ 0
218 dist_freq/316228-562341/-- 0
219 dist_freq/316228-562341/++ 1
220 dist_freq/562341-1000000/+- 1
221 dist_freq/562341-1000000/-+ 0
222 dist_freq/562341-1000000/-- 0
223 dist_freq/562341-1000000/++ 1
224 dist_freq/1000000-1778279/+- 0
225 dist_freq/1000000-1778279/-+ 0
226 dist_freq/1000000-1778279/-- 1
227 dist_freq/1000000-1778279/++ 0
228 dist_freq/1778279-3162278/+- 0
229 dist_freq/1778279-3162278/-+ 0
230 dist_freq/1778279-3162278/-- 0
231 dist_freq/1778279-3162278/++ 0
232 dist_freq/3162278-5623413/+- 0
233 dist_freq/3162278-5623413/-+ 0
234 dist_freq/3162278-5623413/-- 0
235 dist_freq/3162278-5623413/++ 0
236 dist_freq/5623413-10000000/+- 0
237 dist_freq/5623413-10000000/-+ 0
238 dist_freq/5623413-10000000/-- 0
239 dist_freq/5623413-10000000/++ 0
240 dist_freq/10000000-17782794/+- 0
241 dist_freq/10000000-17782794/-+ 0
242 dist_freq/10000000-17782794/-- 0
243 dist_freq/10000000-17782794/++ 0
244 dist_freq/17782794-31622777/+- 0
245 dist_freq/17782794-31622777/-+ 0
246 dist_freq/17782794-31622777/-- 0
247 dist_freq/17782794-31622777/++ 0
248 dist_freq/31622777-56234133/+- 0
249 dist_freq/31622777-56234133/-+ 0
250 dist_freq/31622777-56234133/-- 0
251 dist_freq/31622777-56234133/++ 0
252 dist_freq/56234133-100000000/+- 0
253 dist_freq/56234133-100000000/-+ 0
254 dist_freq/56234133-100000000/-- 0
255 dist_freq/56234133-100000000/++ 0
256 dist_freq/100000000-177827941/+- 0
257 dist_freq/100000000-177827941/-+ 0
258 dist_freq/100000000-177827941/-- 0
259 dist_freq/100000000-177827941/++ 0
260 dist_freq/177827941-316227766/+- 0
261 dist_freq/177827941-316227766/-+ 0
262 dist_freq/177827941-316227766/-- 0
263 dist_freq/177827941-316227766/++ 0
264 dist_freq/316227766-562341325/+- 0
265 dist_freq/316227766-562341325/-+ 0
266 dist_freq/316227766-562341325/-- 0
267 dist_freq/316227766-562341325/++ 0
268 dist_freq/562341325-1000000000/+- 0
269 dist_freq/562341325-1000000000/-+ 0
270 dist_freq/562341325-1000000000/-- 0
271 dist_freq/562341325-1000000000/++ 0
272 dist_freq/562341325+/+- 0
273 dist_freq/562341325+/-+ 0
274 dist_freq/562341325+/-- 0
275 dist_freq/562341325+/++ 0