Mercurial > repos > iuc > pairtools_dedup
diff test-data/output_parsed_pairs_sam_assemblyname.pairs @ 5:56bb29747b4d draft default tip
planemo upload for repository https://github.com/open2c/pairtools commit 13aa776596c927adff29d936740ac80f0e37375d
author | iuc |
---|---|
date | Tue, 21 May 2024 16:03:55 +0000 |
parents | 55a53b5e308d |
children |
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--- a/test-data/output_parsed_pairs_sam_assemblyname.pairs Tue Apr 30 12:02:29 2024 +0000 +++ b/test-data/output_parsed_pairs_sam_assemblyname.pairs Tue May 21 16:03:55 2024 +0000 @@ -4,7 +4,7 @@ #chromsize: Test_seq 450060 #samheader: @SQ SN:Test_seq LN:450060 #samheader: @PG ID:bwa-mem2 PN:bwa-mem2 VN:2.2.1 CL:bwa-mem2 mem -5SP -T0 -t 8 test test_hic_reads_1.fq test_hic_reads_2.fq -#samheader: @PG ID:pairtools_parse PN:pairtools_parse CL:/usr/local/bin/pairtools parse /tmp/tmpchj83off/files/5/2/e/dataset_52effa56-a42c-41a9-802e-401d7a5813de.dat -c /tmp/tmpchj83off/files/8/d/d/dataset_8dd0a91e-ecbd-4f98-86cd-2510709cac82.dat --assembly test_assembly -o /tmp/tmpchj83off/job_working_directory/000/28/outputs/dataset_0a87c13d-5811-4e81-9626-bb8665d07df4.dat --min-mapq 1 --max-molecule-size 750 --walks-policy mask --max-inter-align-gap 20 --nproc-in 1 --nproc-out 1 PP:bwa-mem2 VN:1.1.0 +#samheader: @PG ID:pairtools_parse PN:pairtools_parse CL:/usr/local/bin/pairtools parse /tmp/tmprvti6kw7/files/6/0/0/dataset_600103a3-0dfd-425e-9758-fd74483e7fba.dat -c /tmp/tmprvti6kw7/files/9/4/6/dataset_946e6de4-4d3a-422e-a73b-b8f7646b510d.dat --assembly test_assembly -o /tmp/tmprvti6kw7/job_working_directory/000/28/outputs/dataset_65c0af76-60c7-4aac-b926-a405b8e6f3cf.dat --min-mapq 1 --max-molecule-size 750 --walks-policy mask --max-inter-align-gap 20 --nproc-in 1 --nproc-out 1 PP:bwa-mem2 VN:1.1.0 #columns: readID chrom1 pos1 chrom2 pos2 strand1 strand2 pair_type sam1 sam2 A00126:224:H7HMWDSX3:3:1101:4779:3098 Test_seq 166211 Test_seq 214901 - - UU A00126:224:H7HMWDSX3:3:1101:4779:3098113Test_seq1661344378M=21482448691GGGCACCAACTAGTTCTTCTGGTCTCAGGATAATGTAGGTCTCTGGTTCATGTGGCCCTTTCTGTCTCTTGGGTTCTTFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF,FFFFFFFFFFFFFFFFFFFFFFFFFF:FFF:FFFFFFFFFFFFFFFNM:i:0MD:Z:78MC:Z:78MAS:i:78XS:i:63XA:Z:Test_seq,+214829,5S73M,2;Yt:Z:UU A00126:224:H7HMWDSX3:3:1101:4779:3098177Test_seq214824578M=166134-48691AAGAGCCCAAGAGACAGAAAGGGCCACATGAACCACAGACCTACATCATCCTGAGACCAGAAGAACTAGTTGGTGCCCFFFF,FFFFFFFFFFFFF,FFFFFFFFFFFF:FF:,FFFFFFF:FF:FFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFNM:i:3MD:Z:1T33G33A8MC:Z:78MAS:i:66XS:i:63XA:Z:Test_seq,+166134,78M,3;Yt:Z:UU A00126:224:H7HMWDSX3:3:1101:2908:3239 Test_seq 167331 Test_seq 167696 + - UU A00126:224:H7HMWDSX3:3:1101:2908:3239161Test_seq16733123151M=167546366TGAGATGTCATAGCTGAATATTCTTTCCCAGTCTGTAGGTGGTCTTTTTACTCTTTTGGTGAAGTCTTTAGATGAGCATAGGTGTTTGATTTTTAGGAGCTCCCAGTTATCTGGTTTCTCTTCATCATTTTTGGTAATGTTTTGTATTCTGFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFF:FFF:FFFFF:FFFF:FFFFFFFFFFFFFFF:FF,,FFFFFFFFFFFFFF,FFFFFFFFFFFFFFFFFFFFFFFFFF:F:FFFFFFFF:FFFFFFFF:FF,FFNM:i:1MD:Z:37A113MC:Z:151MAS:i:146XS:i:135XA:Z:Test_seq,-213553,151M,4;Yt:Z:UU A00126:224:H7HMWDSX3:3:1101:2908:323981Test_seq16754644151M=167331-366TAGTCTTTATGTTTAGGTCTTTGATCCACTTGGAGTTAGTTTTTGTGCATGGTGTGAGGTATGGGTCCTGTTTCATTCTTTTACAAATGGATATCCAGGTATGCCAGCACCATTTGTTAAAAAGACTATTATTTCCCCAATTGACTGACACFF,F,F:FFFFFFFFF,FFF:FFFFFF:FFFF:FFFFFFFFFFF:FF::F,FFFFFFFFF:,F,FFF:FFFFFFFFFFFFFFFFFFFFF:FF:FFF::FFFFFFFFFFFFF,FFFFFFF:FF:F,:FFFFFFFFFF,F,F:FFFFFFFFFFNM:i:3MD:Z:82G15T30C21MC:Z:151MAS:i:136XS:i:114XA:Z:Test_seq,+213342,118M2I23M2I6M,8;Yt:Z:UU