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view test-data/output_parsed_pairs.stats @ 4:55a53b5e308d draft

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planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
author iuc
date Tue, 30 Apr 2024 12:02:29 +0000
parents f8c1d2a93d43
children
line wrap: on
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total	592
total_unmapped	53
total_single_sided_mapped	231
total_mapped	308
total_dups	0
total_nodups	308
cis	308
trans	0
pair_types/MU	95
pair_types/UU	293
pair_types/MM	49
pair_types/UR	8
pair_types/MR	26
pair_types/NR	110
pair_types/RU	7
pair_types/NM	4
cis_1kb+	15
cis_2kb+	14
cis_4kb+	14
cis_10kb+	12
cis_20kb+	9
cis_40kb+	9
summary/frac_cis	1.0
summary/frac_cis_1kb+	0.048701298701298704
summary/frac_cis_2kb+	0.045454545454545456
summary/frac_cis_4kb+	0.045454545454545456
summary/frac_cis_10kb+	0.03896103896103896
summary/frac_cis_20kb+	0.02922077922077922
summary/frac_cis_40kb+	0.02922077922077922
summary/frac_dups	0.0
summary/complexity_naive	nan
summary/dist_freq_convergence/convergence_dist	177828
summary/dist_freq_convergence/strands_w_max_convergence_dist	++
summary/dist_freq_convergence/convergence_rel_diff_threshold	0.05
summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/++	4
summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/--	2
summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/-+	1
summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/+-	301
summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist_all_strands	308
summary/dist_freq_convergence/n_cis_pairs_above_convergence_dist_all_strands	0
summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/++	0.012987012987012988
summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/--	0.006493506493506494
summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/-+	0.003246753246753247
summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/+-	0.9772727272727273
summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist_all_strands	1.0
summary/dist_freq_convergence/frac_cis_in_cis_above_convergence_dist_all_strands	0.0
summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/++	0.012987012987012988
summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/--	0.006493506493506494
summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/-+	0.003246753246753247
summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/+-	0.9772727272727273
summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist_all_strands	1.0
summary/dist_freq_convergence/frac_total_mapped_in_cis_above_convergence_dist_all_strands	0.0
summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/++	0.012987012987012988
summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/--	0.006493506493506494
summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/-+	0.003246753246753247
summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/+-	0.9772727272727273
summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist_all_strands	1.0
summary/dist_freq_convergence/frac_total_nodups_in_cis_above_convergence_dist_all_strands	0.0
chrom_freq/Test_seq/Test_seq	308
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