Mercurial > repos > iuc > pairtools_parse

comparison test-data/pairs_output_yaml.stats @ 5:a98caf2d8309 draft

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planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
author iuc
date Fri, 05 Apr 2024 10:33:52 +0000
parents
children 44cb74c154bc
comparison
equal deleted inserted replaced
4:4705f16fdd10 5:a98caf2d8309
1 no_filter:
2 total: 592
3 total_unmapped: 4
4 total_single_sided_mapped: 147
5 total_mapped: 441
6 total_dups: 0
7 total_nodups: 441
8 cis: 441
9 trans: 0
10 pair_types:
11 UU: 405
12 NR: 119
13 MU: 21
14 UR: 19
15 RU: 17
16 MR: 6
17 MM: 4
18 NU: 1
19 cis_1kb+: 75
20 cis_2kb+: 72
21 cis_4kb+: 70
22 cis_10kb+: 67
23 cis_20kb+: 61
24 cis_40kb+: 61
25 summary:
26 frac_cis: 1.0
27 frac_cis_1kb+: 0.17006802721088435
28 frac_cis_2kb+: 0.16326530612244897
29 frac_cis_4kb+: 0.15873015873015872
30 frac_cis_10kb+: 0.15192743764172337
31 frac_cis_20kb+: 0.1383219954648526
32 frac_cis_40kb+: 0.1383219954648526
33 frac_dups: 0.0
34 complexity_naive: .nan
35 chrom_freq:
36 Test_seq/Test_seq: 441
37 dist_freq:
38 +-:
39 0: 0
40 1: 0
41 2: 0
42 3: 0
43 6: 0
44 10: 0
45 18: 0
46 32: 7
47 56: 9
48 100: 5
49 178: 60
50 316: 284
51 562: 1
52 1000: 1
53 1778: 1
54 3162: 0
55 5623: 2
56 10000: 2
57 17783: 1
58 31623: 0
59 56234: 3
60 100000: 3
61 177828: 4
62 316228: 0
63 562341: 0
64 1000000: 0
65 1778279: 0
66 3162278: 0
67 5623413: 0
68 10000000: 0
69 17782794: 0
70 31622777: 0
71 56234133: 0
72 100000000: 0
73 177827941: 0
74 316227766: 0
75 562341325: 0
76 1000000000: 0
77 -+:
78 0: 0
79 1: 0
80 2: 0
81 3: 0
82 6: 0
83 10: 0
84 18: 0
85 32: 0
86 56: 0
87 100: 0
88 178: 0
89 316: 0
90 562: 0
91 1000: 0
92 1778: 0
93 3162: 0
94 5623: 0
95 10000: 2
96 17783: 0
97 31623: 1
98 56234: 0
99 100000: 3
100 177828: 0
101 316228: 1
102 562341: 0
103 1000000: 0
104 1778279: 0
105 3162278: 0
106 5623413: 0
107 10000000: 0
108 17782794: 0
109 31622777: 0
110 56234133: 0
111 100000000: 0
112 177827941: 0
113 316227766: 0
114 562341325: 0
115 1000000000: 0
116 --:
117 0: 0
118 1: 0
119 2: 0
120 3: 0
121 6: 0
122 10: 0
123 18: 0
124 32: 0
125 56: 0
126 100: 0
127 178: 0
128 316: 0
129 562: 0
130 1000: 1
131 1778: 1
132 3162: 0
133 5623: 0
134 10000: 0
135 17783: 0
136 31623: 21
137 56234: 1
138 100000: 2
139 177828: 0
140 316228: 0
141 562341: 0
142 1000000: 0
143 1778279: 0
144 3162278: 0
145 5623413: 0
146 10000000: 0
147 17782794: 0
148 31622777: 0
149 56234133: 0
150 100000000: 0
151 177827941: 0
152 316227766: 0
153 562341325: 0
154 1000000000: 0
155 ++:
156 0: 0
157 1: 0
158 2: 0
159 3: 0
160 6: 0
161 10: 0
162 18: 0
163 32: 0
164 56: 0
165 100: 0
166 178: 0
167 316: 0
168 562: 0
169 1000: 0
170 1778: 1
171 3162: 0
172 5623: 1
173 10000: 1
174 17783: 0
175 31623: 10
176 56234: 3
177 100000: 7
178 177828: 2
179 316228: 0
180 562341: 0
181 1000000: 0
182 1778279: 0
183 3162278: 0
184 5623413: 0
185 10000000: 0
186 17782794: 0
187 31622777: 0
188 56234133: 0
189 100000000: 0
190 177827941: 0
191 316227766: 0
192 562341325: 0
193 1000000000: 0
194 chromsizes:
195 Test_seq: 450060