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view test-data/pairs_output_with_chromsize.stats @ 9:d3a7b17714c1 draft

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planemo upload for repository https://github.com/open2c/pairtools commit 13aa776596c927adff29d936740ac80f0e37375d
author iuc
date Tue, 21 May 2024 16:05:04 +0000
parents 44cb74c154bc
children
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total	592
total_unmapped	4
total_single_sided_mapped	147
total_mapped	441
total_dups	0
total_nodups	441
cis	441
trans	0
pair_types/UU	405
pair_types/NR	119
pair_types/MU	21
pair_types/UR	19
pair_types/RU	17
pair_types/MR	6
pair_types/MM	4
pair_types/NU	1
cis_1kb+	75
cis_2kb+	72
cis_4kb+	70
cis_10kb+	67
cis_20kb+	61
cis_40kb+	61
summary/frac_cis	1.0
summary/frac_cis_1kb+	0.17006802721088435
summary/frac_cis_2kb+	0.16326530612244897
summary/frac_cis_4kb+	0.15873015873015872
summary/frac_cis_10kb+	0.15192743764172337
summary/frac_cis_20kb+	0.1383219954648526
summary/frac_cis_40kb+	0.1383219954648526
summary/frac_dups	0.0
summary/complexity_naive	nan
summary/dist_freq_convergence/convergence_dist	421697
summary/dist_freq_convergence/strands_w_max_convergence_dist	++
summary/dist_freq_convergence/convergence_rel_diff_threshold	0.05
summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/++	25
summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/--	26
summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/-+	7
summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/+-	383
summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist_all_strands	441
summary/dist_freq_convergence/n_cis_pairs_above_convergence_dist_all_strands	0
summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/++	0.05668934240362812
summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/--	0.05895691609977324
summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/-+	0.015873015873015872
summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/+-	0.8684807256235828
summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist_all_strands	1.0
summary/dist_freq_convergence/frac_cis_in_cis_above_convergence_dist_all_strands	0.0
summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/++	0.05668934240362812
summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/--	0.05895691609977324
summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/-+	0.015873015873015872
summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/+-	0.8684807256235828
summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist_all_strands	1.0
summary/dist_freq_convergence/frac_total_mapped_in_cis_above_convergence_dist_all_strands	0.0
summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/++	0.05668934240362812
summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/--	0.05895691609977324
summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/-+	0.015873015873015872
summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/+-	0.8684807256235828
summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist_all_strands	1.0
summary/dist_freq_convergence/frac_total_nodups_in_cis_above_convergence_dist_all_strands	0.0
chrom_freq/Test_seq/Test_seq	441
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chromsizes/Test_seq	450060