Mercurial > repos > iuc > pairtools_parse
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planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
| author | iuc |
|---|---|
| date | Sun, 22 Dec 2024 15:40:36 +0000 |
| parents | 44cb74c154bc |
| children |
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## pairs format v1.0.0 #sorted: chr1-chr2-pos1-pos2 #shape: upper triangle #genome_assembly: unknown #chromsize: chrI 230218 #chromsize: chrII 813184 #chromsize: chrIII 316620 #chromsize: chrIV 1531933 #chromsize: chrV 576874 #chromsize: chrVI 270161 #chromsize: chrVII 1090940 #chromsize: chrVIII 562643 #chromsize: chrIX 439888 #chromsize: chrX 745751 #chromsize: chrXI 666816 #chromsize: chrXII 1078177 #chromsize: chrXIII 924431 #chromsize: chrXIV 784333 #chromsize: chrXV 1091291 #chromsize: chrXVI 948066 #chromsize: chrM 85779 #samheader: @SQ SN:chrI LN:230218 #samheader: @SQ SN:chrII LN:813184 #samheader: @SQ SN:chrIII LN:316620 #samheader: @SQ SN:chrIV LN:1531933 #samheader: @SQ SN:chrIX LN:439888 #samheader: @SQ SN:chrM LN:85779 #samheader: @SQ SN:chrV LN:576874 #samheader: @SQ SN:chrVI LN:270161 #samheader: @SQ SN:chrVII LN:1090940 #samheader: @SQ SN:chrVIII LN:562643 #samheader: @SQ SN:chrX LN:745751 #samheader: @SQ SN:chrXI LN:666816 #samheader: @SQ SN:chrXII LN:1078177 #samheader: @SQ SN:chrXIII LN:924431 #samheader: @SQ SN:chrXIV LN:784333 #samheader: @SQ SN:chrXV LN:1091291 #samheader: @SQ SN:chrXVI LN:948066 #samheader: @PG ID:bwa PN:bwa VN:0.7.15-r1140 CL:bwa mem -t 8 -v 3 -SP sacCer3.fa.gz MATalpha_R1.lane1.00.1.fastq.gz MATalpha_R1.lane1.00.2.fastq.gz #samheader: @PG ID:pairtools_parse-1.2 PN:pairtools_parse CL:/scratch/ddepanis/Software/anaconda3/envs/MAP_env/bin/pairtools parse -o output_parsed_pairs_bam.pairs --output-stats output_parsed_pairs.stats --min-mapq 40 --walks-policy 5unique --max-inter-align-gap 30 --chroms-path test.reduced.chrom.sizes test.bam PP:bwa VN:1.0.2 #samheader: @PG ID:pairtools_sort-1.3 PN:pairtools_sort CL:/scratch/ddepanis/Software/anaconda3/envs/MAP_env/bin/pairtools sort -o output_sorted_pairs.pairsam output_parsed_pairs_bam.pairs PP:pairtools_parse-1.2 VN:1.0.2 #samheader: @PG ID:pairtools_dedup-1.4 PN:pairtools_dedup CL:/usr/local/bin/pairtools dedup /tmp/tmpp1v7bap4/files/3/7/9/dataset_379f0c04-3329-4201-9b3c-3c3a66e7eec4.dat -o /tmp/tmpp1v7bap4/job_working_directory/000/6/outputs/dataset_6f9ee270-56fb-4c2e-92f4-509340f9eb58.dat --mark-dups --output-stats /tmp/tmpp1v7bap4/job_working_directory/000/6/outputs/dataset_653a5918-ae05-4cfe-8fc9-4ecc516aeaf1.dat --nproc-in 1 --nproc-out 1 PP:pairtools_sort-1.3 VN:1.1.0 #samheader: @PG ID:pairtools_split-1.5 PN:pairtools_split CL:/usr/local/bin/pairtools split /tmp/tmpms_dxt0a/files/8/b/9/dataset_8b97afbd-6770-4cb4-8bf1-fdc78bbce0af.dat --output-pairs /tmp/tmpms_dxt0a/job_working_directory/000/2/outputs/dataset_da90611d-b0d1-447c-ae61-f9ac7147d51d.dat --output-sam ./output.bam --nproc-in 1 --nproc-out 1 PP:pairtools_dedup-1.4 VN:1.1.0 #samheader: @PG ID:bwa-2CCE5976 PN:bwa VN:0.7.15-r1140 CL:bwa mem -t 8 -v 3 -SP sacCer3.fa.gz MATalpha_R1.lane1.01.1.fastq.gz MATalpha_R1.lane1.01.2.fastq.gz #samheader: @PG ID:pairtools_parse-2.2 PN:pairtools_parse CL:/scratch/ddepanis/Software/anaconda3/envs/MAP_env/bin/pairtools parse -o output_parsed_pairs_bam.pairs --output-stats output_parsed_pairs.stats --min-mapq 40 --walks-policy 5unique --max-inter-align-gap 30 --chroms-path test.reduced.chrom.sizes test.bam PP:bwa-2CCE5976 VN:1.0.2 #samheader: @PG ID:pairtools_sort-2.3 PN:pairtools_sort CL:/scratch/ddepanis/Software/anaconda3/envs/MAP_env/bin/pairtools sort -o output_sorted_pairs.pairsam output_parsed_pairs_bam.pairs PP:pairtools_parse-2.2 VN:1.0.2 #samheader: @PG ID:pairtools_dedup-2.4 PN:pairtools_dedup CL:/usr/local/bin/pairtools dedup /tmp/tmpp1v7bap4/files/3/7/9/dataset_379f0c04-3329-4201-9b3c-3c3a66e7eec4.dat -o /tmp/tmpp1v7bap4/job_working_directory/000/6/outputs/dataset_6f9ee270-56fb-4c2e-92f4-509340f9eb58.dat --mark-dups --output-stats /tmp/tmpp1v7bap4/job_working_directory/000/6/outputs/dataset_653a5918-ae05-4cfe-8fc9-4ecc516aeaf1.dat --nproc-in 1 --nproc-out 1 PP:pairtools_sort-2.3 VN:1.1.0 #samheader: @PG ID:pairtools_split-2.5 PN:pairtools_split CL:/usr/local/bin/pairtools split /tmp/tmpms_dxt0a/files/8/b/9/dataset_8b97afbd-6770-4cb4-8bf1-fdc78bbce0af.dat --output-pairs /tmp/tmpms_dxt0a/job_working_directory/000/2/outputs/dataset_da90611d-b0d1-447c-ae61-f9ac7147d51d.dat --output-sam ./output.bam --nproc-in 1 --nproc-out 1 PP:pairtools_dedup-2.4 VN:1.1.0 #samheader: @PG ID:bwa-3CAFD9D9 PN:bwa VN:0.7.15-r1140 CL:bwa mem -t 8 -v 3 -SP sacCer3.fa.gz MATalpha_R1.lane2.00.1.fastq.gz MATalpha_R1.lane2.00.2.fastq.gz #samheader: @PG ID:pairtools_parse-3.2 PN:pairtools_parse CL:/scratch/ddepanis/Software/anaconda3/envs/MAP_env/bin/pairtools parse -o output_parsed_pairs_bam.pairs --output-stats output_parsed_pairs.stats --min-mapq 40 --walks-policy 5unique --max-inter-align-gap 30 --chroms-path test.reduced.chrom.sizes test.bam PP:bwa-3CAFD9D9 VN:1.0.2 #samheader: @PG ID:pairtools_sort-3.3 PN:pairtools_sort CL:/scratch/ddepanis/Software/anaconda3/envs/MAP_env/bin/pairtools sort -o output_sorted_pairs.pairsam output_parsed_pairs_bam.pairs PP:pairtools_parse-3.2 VN:1.0.2 #samheader: @PG ID:pairtools_dedup-3.4 PN:pairtools_dedup CL:/usr/local/bin/pairtools dedup /tmp/tmpp1v7bap4/files/3/7/9/dataset_379f0c04-3329-4201-9b3c-3c3a66e7eec4.dat -o /tmp/tmpp1v7bap4/job_working_directory/000/6/outputs/dataset_6f9ee270-56fb-4c2e-92f4-509340f9eb58.dat --mark-dups --output-stats /tmp/tmpp1v7bap4/job_working_directory/000/6/outputs/dataset_653a5918-ae05-4cfe-8fc9-4ecc516aeaf1.dat --nproc-in 1 --nproc-out 1 PP:pairtools_sort-3.3 VN:1.1.0 #samheader: @PG ID:pairtools_split-3.5 PN:pairtools_split CL:/usr/local/bin/pairtools split /tmp/tmpms_dxt0a/files/8/b/9/dataset_8b97afbd-6770-4cb4-8bf1-fdc78bbce0af.dat --output-pairs /tmp/tmpms_dxt0a/job_working_directory/000/2/outputs/dataset_da90611d-b0d1-447c-ae61-f9ac7147d51d.dat --output-sam ./output.bam --nproc-in 1 --nproc-out 1 PP:pairtools_dedup-3.4 VN:1.1.0 #samheader: @PG ID:bwa-4548A671 PN:bwa VN:0.7.15-r1140 CL:bwa mem -t 8 -v 3 -SP sacCer3.fa.gz MATalpha_R1.lane2.01.1.fastq.gz MATalpha_R1.lane2.01.2.fastq.gz #samheader: @PG ID:samtools PN:samtools PP:bwa-4548A671 VN:1.19.2 CL:samtools view -s 0.1 -b -@ 4 -o subset.bam test.bam #samheader: @PG ID:pairtools_parse-4.3 PN:pairtools_parse CL:/scratch/ddepanis/Software/anaconda3/envs/MAP_env/bin/pairtools parse -o output_parsed_pairs_bam.pairs --output-stats output_parsed_pairs.stats --min-mapq 40 --walks-policy 5unique --max-inter-align-gap 30 --chroms-path test.reduced.chrom.sizes test.bam PP:samtools VN:1.0.2 #samheader: @PG ID:pairtools_sort-4.4 PN:pairtools_sort CL:/scratch/ddepanis/Software/anaconda3/envs/MAP_env/bin/pairtools sort -o output_sorted_pairs.pairsam output_parsed_pairs_bam.pairs PP:pairtools_parse-4.3 VN:1.0.2 #samheader: @PG ID:pairtools_dedup-4.5 PN:pairtools_dedup CL:/usr/local/bin/pairtools dedup /tmp/tmpp1v7bap4/files/3/7/9/dataset_379f0c04-3329-4201-9b3c-3c3a66e7eec4.dat -o /tmp/tmpp1v7bap4/job_working_directory/000/6/outputs/dataset_6f9ee270-56fb-4c2e-92f4-509340f9eb58.dat --mark-dups --output-stats /tmp/tmpp1v7bap4/job_working_directory/000/6/outputs/dataset_653a5918-ae05-4cfe-8fc9-4ecc516aeaf1.dat --nproc-in 1 --nproc-out 1 PP:pairtools_sort-4.4 VN:1.1.0 #samheader: @PG ID:pairtools_split-4.6 PN:pairtools_split CL:/usr/local/bin/pairtools split /tmp/tmpms_dxt0a/files/8/b/9/dataset_8b97afbd-6770-4cb4-8bf1-fdc78bbce0af.dat --output-pairs /tmp/tmpms_dxt0a/job_working_directory/000/2/outputs/dataset_da90611d-b0d1-447c-ae61-f9ac7147d51d.dat --output-sam ./output.bam --nproc-in 1 --nproc-out 1 PP:pairtools_dedup-4.5 VN:1.1.0 #columns: readID chrom1 pos1 chrom2 pos2 strand1 strand2 pair_type HWI-ST560:29:B0A7LABXX:2:1101:15566:24141 chrI 3199 chrI 3399 + - UU HWI-ST560:29:B0A7LABXX:2:1101:18861:21891 chrI 35431 chrI 35703 + - UU HWUSI-EAS1533_0033_FC:1:1:2785:5545 chrI 50947 chrI 51201 + - UU HWI-ST560:29:B0A7LABXX:2:1101:19121:14576 chrI 85708 chrI 85934 + - UU HWI-ST560:29:B0A7LABXX:2:1101:14350:22419 chrI 94155 chrI 94554 - + UU HWUSI-EAS1533_0033_FC:1:1:1548:16444 chrI 119190 chrI 121691 + - UU HWUSI-EAS1533_0033_FC:1:1:2382:14559 chrI 133796 chrI 153772 + - UU HWUSI-EAS1533_0033_FC:1:1:1160:9629 chrI 10807 chrX 448620 + + UU HWI-ST560:29:B0A7LABXX:2:1101:1226:5768 chrI 34588 chrX 518111 - + UU HWUSI-EAS1533_0033_FC:1:1:2020:12833 chrI 79395 chrXV 383129 - + UU HWUSI-EAS1533_0033_FC:1:1:1238:11260 chrII 11700 chrII 42692 - - UU HWUSI-EAS1533_0033_FC:1:1:1585:7670 chrII 20403 chrII 26681 + + UU HWI-ST560:29:B0A7LABXX:2:1101:4374:5551 chrII 22903 chrII 23092 + - UU HWUSI-EAS1533_0033_FC:1:1:1502:18166 chrII 53074 chrII 53324 + - UU HWI-ST560:29:B0A7LABXX:2:1101:2416:5458 chrII 55526 chrII 55730 + - UU HWUSI-EAS1533_0033_FC:1:1:2229:14691 chrII 56528 chrII 56789 + - UU HWI-ST560:29:B0A7LABXX:2:1101:9983:2230 chrII 69562 chrII 91521 - - UU HWUSI-EAS1533_0033_FC:1:1:2771:20227 chrII 84449 chrII 114125 - - UU HWUSI-EAS1533_0033_FC:1:1:1515:8375 chrII 126897 chrII 136056 - + UU HWUSI-EAS1533_0033_FC:1:1:2262:14069 chrII 147635 chrII 147883 + - UU HWUSI-EAS1533_0033_FC:1:1:2148:13704 chrII 178555 chrII 191157 - - UU HWUSI-EAS1533_0033_FC:1:1:2951:12833 chrII 188963 chrII 189298 + - UU HWI-ST560:29:B0A7LABXX:2:1101:10119:22809 chrII 212558 chrII 212771 + - UU HWI-ST560:29:B0A7LABXX:2:1101:17198:12556 chrII 236553 chrII 236829 + - UU HWUSI-EAS1533_0033_FC:1:1:2544:2469 chrII 250592 chrII 250768 + - UU HWUSI-EAS1533_0033_FC:1:1:3025:9231 chrII 274855 chrII 283930 - + UU HWUSI-EAS1533_0033_FC:1:1:1868:10767 chrII 276112 chrII 276329 + - UU HWUSI-EAS1533_0033_FC:1:1:1410:21133 chrII 319176 chrII 319379 + - UU HWUSI-EAS1533_0033_FC:1:1:1760:17314 chrII 327789 chrII 328642 - + UU HWUSI-EAS1533_0033_FC:1:1:3052:7878 chrII 329706 chrII 396585 - - UU HWUSI-EAS1533_0033_FC:1:1:2308:7870 chrII 364961 chrII 365268 - - UU HWUSI-EAS1533_0033_FC:1:1:1151:13110 chrII 401039 chrII 401275 + - UU HWUSI-EAS1533_0033_FC:1:1:1955:14706 chrII 408741 chrII 408965 + - UU HWUSI-EAS1533_0033_FC:1:1:2734:12933 chrII 428609 chrII 428916 + - UU HWUSI-EAS1533_0033_FC:1:1:1776:7586 chrII 446926 chrII 447223 + - UU HWUSI-EAS1533_0033_FC:1:1:2208:18926 chrII 469836 chrII 470147 + - UU HWI-ST560:29:B0A7LABXX:2:1101:9546:17730 chrII 482953 chrII 483180 + - UU HWI-ST560:29:B0A7LABXX:2:1101:18138:24479 chrII 493570 chrII 493844 + - UU HWUSI-EAS1533_0033_FC:1:1:1831:12134 chrII 513405 chrII 513670 + - UU HWUSI-EAS1533_0033_FC:1:1:2294:6569 chrII 556786 chrII 557020 + - UU HWUSI-EAS1533_0033_FC:1:1:1513:12716 chrII 557332 chrII 557570 + - UU HWI-ST560:29:B0A7LABXX:2:1101:5620:23491 chrII 571962 chrII 572560 - + UU HWUSI-EAS1533_0033_FC:1:1:2421:18479 chrII 594392 chrII 594631 + - UU HWUSI-EAS1533_0033_FC:1:1:2741:20996 chrII 615832 chrII 616146 + - UU HWI-ST560:29:B0A7LABXX:2:1101:5221:14370 chrII 688819 chrII 691365 - - UU HWI-ST560:29:B0A7LABXX:2:1101:20922:4151 chrII 736016 chrII 736278 + - UU HWUSI-EAS1533_0033_FC:1:1:2796:9905 chrII 747450 chrII 783460 + - UU HWUSI-EAS1533_0033_FC:1:1:2239:7598 chrII 768757 chrII 769022 + - UU HWUSI-EAS1533_0033_FC:1:1:2507:2555 chrII 783305 chrII 783561 + - UU HWUSI-EAS1533_0033_FC:1:1:2502:3756 chrII 784470 chrII 784699 + - UU HWUSI-EAS1533_0033_FC:1:1:1596:14420 chrII 799994 chrII 800209 + - UU HWI-ST560:29:B0A7LABXX:2:1101:1565:22796 chrII 201163 chrIV 438170 - + UU HWUSI-EAS1533_0033_FC:1:1:2343:7694 chrII 245030 chrIV 434994 + - UU HWI-ST560:29:B0A7LABXX:2:1101:13461:15948 chrII 342115 chrIV 773721 - + UU HWUSI-EAS1533_0033_FC:1:1:2985:19319 chrII 624951 chrIV 125181 + + UU HWI-ST560:29:B0A7LABXX:2:1101:19802:11576 chrII 52352 chrVII 288874 - + UU HWUSI-EAS1533_0033_FC:1:1:1985:16682 chrII 57830 chrVII 289181 + - UU HWUSI-EAS1533_0033_FC:1:1:1213:3863 chrII 187593 chrVII 105286 - + UU HWUSI-EAS1533_0033_FC:1:1:2206:19226 chrII 303839 chrVII 733162 - - UU HWUSI-EAS1533_0033_FC:1:1:2371:7513 chrII 743995 chrVII 97752 - + UU HWUSI-EAS1533_0033_FC:1:1:1131:20871 chrII 772130 chrVIII 530331 + + UU HWI-ST560:29:B0A7LABXX:2:1101:2317:19439 chrII 792092 chrX 177292 + - UU HWI-ST560:29:B0A7LABXX:2:1101:5417:14518 chrII 588576 chrXI 395885 + - UU HWI-ST560:29:B0A7LABXX:2:1101:11007:18781 chrII 99101 chrXIII 574066 - - UU HWUSI-EAS1533_0033_FC:1:1:1395:5659 chrII 321669 chrXIII 710492 - - UU HWUSI-EAS1533_0033_FC:1:1:2818:12967 chrII 556147 chrXIII 902866 - + UU HWUSI-EAS1533_0033_FC:1:1:1785:1587 chrII 285155 chrXIV 365651 + - UU HWUSI-EAS1533_0033_FC:1:1:1455:21045 chrII 515072 chrXIV 404330 - - UU HWUSI-EAS1533_0033_FC:1:1:2276:7938 chrII 554117 chrXIV 779544 - - UU HWI-ST560:29:B0A7LABXX:2:1101:13476:19994 chrII 565574 chrXIV 317889 + + UU HWUSI-EAS1533_0033_FC:1:1:1326:21359 chrII 365178 chrXV 1030461 - - UU HWUSI-EAS1533_0033_FC:1:1:1142:11756 chrII 565844 chrXV 328639 - - UU HWUSI-EAS1533_0033_FC:1:1:1792:19745 chrII 280505 chrXVI 486977 - - UU HWUSI-EAS1533_0033_FC:1:1:2530:4893 chrII 535816 chrXVI 428211 + - UU HWUSI-EAS1533_0033_FC:1:1:2896:17270 chrII 605856 chrXVI 716198 - + UU HWUSI-EAS1533_0033_FC:1:1:2501:6790 chrII 766938 chrXVI 473396 - - UU HWUSI-EAS1533_0033_FC:1:1:2940:16409 chrIII 38831 chrIII 39104 + - UU HWI-ST560:29:B0A7LABXX:2:1101:2688:4346 chrIII 80421 chrIII 80656 + - UU HWUSI-EAS1533_0033_FC:1:1:2557:18598 chrIII 123083 chrIII 123413 + - UU HWUSI-EAS1533_0033_FC:1:1:2012:7457 chrIII 130481 chrIII 130777 + - UU HWI-ST560:29:B0A7LABXX:2:1101:14807:25132 chrIII 159701 chrIII 159947 + - UU HWI-ST560:29:B0A7LABXX:2:1101:9017:24534 chrIII 163831 chrIII 164111 + - UU HWUSI-EAS1533_0033_FC:1:1:1090:13307 chrIII 174236 chrIII 174422 + - UU HWUSI-EAS1533_0033_FC:1:1:2228:15729 chrIII 188089 chrIII 191523 + + UU HWUSI-EAS1533_0033_FC:1:1:1723:8895 chrIII 195801 chrIII 196051 + - UU HWUSI-EAS1533_0033_FC:1:1:2422:8313 chrIII 240411 chrIII 240608 + - UU HWI-ST560:29:B0A7LABXX:2:1101:10131:14407 chrIII 273871 chrIII 274141 + - UU HWUSI-EAS1533_0033_FC:1:1:2377:16350 chrIII 285418 chrIII 285677 + - UU HWI-ST560:29:B0A7LABXX:2:1101:11438:10695 chrIII 103251 chrV 106007 + - UU HWUSI-EAS1533_0033_FC:1:1:2834:12779 chrIII 197857 chrV 257881 - + UU HWUSI-EAS1533_0033_FC:1:1:1446:15290 chrIII 266982 chrVIII 288886 - + UU HWUSI-EAS1533_0033_FC:1:1:1491:11863 chrIII 103479 chrX 431261 - + UU HWUSI-EAS1533_0033_FC:1:1:1300:9019 chrIII 238125 chrX 34984 + + UU HWI-ST560:29:B0A7LABXX:2:1101:10436:21845 chrIII 150902 chrXIII 131933 - - UU HWI-ST560:29:B0A7LABXX:2:1101:14317:17406 chrIV 32639 chrIV 1252439 - - UU HWUSI-EAS1533_0033_FC:1:1:2633:2423 chrIV 52140 chrIV 83162 + - UU HWUSI-EAS1533_0033_FC:1:1:1997:11846 chrIV 86189 chrIV 86451 + - UU HWUSI-EAS1533_0033_FC:1:1:2244:5314 chrIV 91057 chrIV 169851 + + UU HWUSI-EAS1533_0033_FC:1:1:2553:17083 chrIV 98665 chrIV 101007 - - UU HWUSI-EAS1533_0033_FC:1:1:2402:8270 chrIV 101387 chrIV 120939 + - UU HWI-ST560:29:B0A7LABXX:2:1101:19197:28658 chrIV 107023 chrIV 290165 + - UU HWUSI-EAS1533_0033_FC:1:1:2022:19753 chrIV 118047 chrIV 130981 + + UU HWUSI-EAS1533_0033_FC:1:1:1545:12738 chrIV 129447 chrIV 129696 + - UU HWI-ST560:29:B0A7LABXX:2:1101:10069:4239 chrIV 154519 chrIV 154792 + - UU HWUSI-EAS1533_0033_FC:1:1:2692:15155 chrIV 248180 chrIV 248422 + - UU HWUSI-EAS1533_0033_FC:1:1:1325:2552 chrIV 250443 chrIV 250710 + - UU HWUSI-EAS1533_0033_FC:1:1:1338:9468 chrIV 253646 chrIV 253912 + - UU HWI-ST560:29:B0A7LABXX:2:1101:17786:14872 chrIV 255158 chrIV 255418 + - UU HWUSI-EAS1533_0033_FC:1:1:2590:6032 chrIV 264908 chrIV 267668 + - UU HWUSI-EAS1533_0033_FC:1:1:1353:11506 chrIV 276043 chrIV 276291 + - UU HWI-ST560:29:B0A7LABXX:2:1101:14635:14080 chrIV 287968 chrIV 288210 + - UU HWUSI-EAS1533_0033_FC:1:1:2238:12316 chrIV 288171 chrIV 288461 + - UU HWUSI-EAS1533_0033_FC:1:1:1367:14469 chrIV 332525 chrIV 332845 + - UU HWUSI-EAS1533_0033_FC:1:1:1106:18802 chrIV 337313 chrIV 337565 + - UU HWI-ST560:29:B0A7LABXX:2:1101:3168:12213 chrIV 337999 chrIV 338171 + - UU HWI-ST560:29:B0A7LABXX:2:1101:7788:3807 chrIV 364464 chrIV 366061 - + UU HWI-ST560:29:B0A7LABXX:2:1101:17010:23170 chrIV 374067 chrIV 1000442 + + UU HWUSI-EAS1533_0033_FC:1:1:1858:19957 chrIV 387190 chrIV 387405 + - UU HWI-ST560:29:B0A7LABXX:2:1101:2615:7606 chrIV 417780 chrIV 417996 + - UU HWUSI-EAS1533_0033_FC:1:1:3027:7026 chrIV 451753 chrIV 452051 + - UU HWUSI-EAS1533_0033_FC:1:1:2079:11479 chrIV 468346 chrIV 468599 + - UU HWUSI-EAS1533_0033_FC:1:1:1875:17005 chrIV 483423 chrIV 483664 + - UU HWUSI-EAS1533_0033_FC:1:1:1996:19695 chrIV 497939 chrIV 498215 + - UU HWUSI-EAS1533_0033_FC:1:1:1441:15108 chrIV 564021 chrIV 564283 + - UU HWUSI-EAS1533_0033_FC:1:1:2459:10498 chrIV 582747 chrIV 583027 + - UU HWI-ST560:29:B0A7LABXX:2:1101:8556:17110 chrIV 593107 chrIV 593378 + - UU HWUSI-EAS1533_0033_FC:1:1:2203:17393 chrIV 594444 chrIV 594637 + - UU HWI-ST560:29:B0A7LABXX:2:1101:9677:8175 chrIV 607473 chrIV 607696 + - UU HWI-ST560:29:B0A7LABXX:2:1101:20565:22235 chrIV 608903 chrIV 609180 + - UU HWUSI-EAS1533_0033_FC:1:1:1557:2114 chrIV 612927 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1029909 + - UU HWUSI-EAS1533_0033_FC:1:1:2949:8713 chrIV 1044136 chrIV 1044367 + - UU HWUSI-EAS1533_0033_FC:1:1:1425:15805 chrIV 1052968 chrIV 1053267 + - UU HWUSI-EAS1533_0033_FC:1:1:1181:1253 chrIV 1066674 chrIV 1224001 + - UU HWI-ST560:29:B0A7LABXX:2:1101:5057:23028 chrIV 1084996 chrIV 1085210 + - UU HWUSI-EAS1533_0033_FC:1:1:2092:13949 chrIV 1118355 chrIV 1119078 - + UU HWUSI-EAS1533_0033_FC:1:1:1227:14096 chrIV 1134906 chrIV 1135115 + - UU HWUSI-EAS1533_0033_FC:1:1:2798:16521 chrIV 1143591 chrIV 1143886 - + UU HWUSI-EAS1533_0033_FC:1:1:1708:10997 chrIV 1174908 chrIV 1175127 + - UU HWUSI-EAS1533_0033_FC:1:1:2052:16139 chrIV 1203148 chrIV 1203467 - + UU HWUSI-EAS1533_0033_FC:1:1:2861:19428 chrIV 1212772 chrIV 1229226 + + UU HWUSI-EAS1533_0033_FC:1:1:2449:11285 chrIV 1222890 chrIV 1223701 - + UU HWUSI-EAS1533_0033_FC:1:1:2651:5673 chrIV 1230429 chrIV 1230708 + - UU HWUSI-EAS1533_0033_FC:1:1:1974:10864 chrIV 1302113 chrIV 1302306 + - UU HWI-ST560:29:B0A7LABXX:2:1101:17946:26398 chrIV 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