# HG changeset patch
# User iuc
# Date 1712657570 0
# Node ID 26ed6ceeeec15e203c5530c9e0e7154f113c7e74
# Parent  a98caf2d8309c2fd419d30f28a2a8d21c4402a24
planemo upload for repository https://github.com/open2c/pairtools commit 203375a1ff145613df37dae4aba6493708f6ad54

diff -r a98caf2d8309 -r 26ed6ceeeec1 parse.xml
--- a/parse.xml	Fri Apr 05 10:33:52 2024 +0000
+++ b/parse.xml	Tue Apr 09 10:12:50 2024 +0000
@@ -32,8 +32,8 @@
         <param argument="--max-molecule-size" type="integer" min="0" value="750" label="Input the maximal size of a Hi-C molecule" help="The maximal size of a Hi-C molecule; used to rescue single ligations(from molecules with three alignments) and to rescue complex ligations."></param>
         <param argument="--drop-readid" type="boolean" truevalue="--drop-readid" falsevalue="" checked="False" label="Do not add read ids to the output"></param>
         <param argument="--drop-seq" type="boolean" truevalue="--drop-seq" falsevalue="" checked="False" label="remove sequences and PHREDs from the sam fields"></param>
-        <param argument="--output-stats" type="boolean" truevalue="--output-stats" falsevalue="" checked="False" label="Do not add sams to the output"></param>
-        <param argument="--drop-sam" type="boolean" truevalue="--drop-sam" falsevalue="" checked="False" label="Generate various statistics of pairs file"></param>    
+        <param argument="--output-stats" type="boolean" truevalue="--output-stats" falsevalue="" checked="False" label="Generate various statistics of pairs file"></param>
+        <param argument="--drop-sam" type="boolean" truevalue="--drop-sam" falsevalue="" checked="False" label="Do not add sams to the output"></param>    
         <param argument="--walks-policy" type="select" label="Walks Policy" help="The policy for reporting unrescuable walks.">
             <expand macro="walks_policy_options"/>
         </param>