Mercurial > repos > iuc > pairtools_sort
comparison test-data/output_parsed_pairs_bam_readid_dropped_seq.pairs @ 6:fdd073110081 draft default tip
planemo upload for repository https://github.com/open2c/pairtools commit 13aa776596c927adff29d936740ac80f0e37375d
| author | iuc |
|---|---|
| date | Tue, 21 May 2024 16:04:29 +0000 |
| parents | 8ed44487c834 |
| children |
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| 5:8ed44487c834 | 6:fdd073110081 |
|---|---|
| 2 #shape: upper triangle | 2 #shape: upper triangle |
| 3 #genome_assembly: unknown | 3 #genome_assembly: unknown |
| 4 #chromsize: Test_seq 450060 | 4 #chromsize: Test_seq 450060 |
| 5 #samheader: @SQ SN:Test_seq LN:450060 | 5 #samheader: @SQ SN:Test_seq LN:450060 |
| 6 #samheader: @PG ID:bwa-mem2 PN:bwa-mem2 VN:2.2.1 CL:bwa-mem2 mem -5SP -T0 -t 8 test test_hic_reads_1.fq test_hic_reads_2.fq | 6 #samheader: @PG ID:bwa-mem2 PN:bwa-mem2 VN:2.2.1 CL:bwa-mem2 mem -5SP -T0 -t 8 test test_hic_reads_1.fq test_hic_reads_2.fq |
| 7 #samheader: @PG ID:pairtools_parse PN:pairtools_parse CL:/usr/local/bin/pairtools parse /tmp/tmpchj83off/files/b/7/b/dataset_b7b0c820-0d14-4f18-95e3-c6fb58aae265.dat -c /tmp/tmpchj83off/files/d/7/1/dataset_d718e69b-ffe9-4c9d-ab83-1d209e3a56bf.dat -o /tmp/tmpchj83off/job_working_directory/000/22/outputs/dataset_e94790d6-3c0a-4eaf-a7ee-9cab4494c297.dat --min-mapq 40 --max-molecule-size 750 --drop-seq --walks-policy 5unique --max-inter-align-gap 20 --nproc-in 1 --nproc-out 1 PP:bwa-mem2 VN:1.1.0 | 7 #samheader: @PG ID:pairtools_parse PN:pairtools_parse CL:/usr/local/bin/pairtools parse /tmp/tmprvti6kw7/files/3/d/f/dataset_3df76cd6-dab5-462b-a22f-bf1115b9974c.dat -c /tmp/tmprvti6kw7/files/c/b/d/dataset_cbd66733-f4da-4e5d-b5c8-7d6950d3a01f.dat -o /tmp/tmprvti6kw7/job_working_directory/000/22/outputs/dataset_418bdbde-f199-4661-b278-dd05e7cdc375.dat --min-mapq 40 --max-molecule-size 750 --drop-seq --walks-policy 5unique --max-inter-align-gap 20 --nproc-in 1 --nproc-out 1 PP:bwa-mem2 VN:1.1.0 |
| 8 #columns: readID chrom1 pos1 chrom2 pos2 strand1 strand2 pair_type sam1 sam2 | 8 #columns: readID chrom1 pos1 chrom2 pos2 strand1 strand2 pair_type sam1 sam2 |
| 9 A00126:224:H7HMWDSX3:3:1101:4779:3098 ! 0 Test_seq 166211 - - MU A00126:224:H7HMWDSX3:3:1101:4779:3098177Test_seq214824578M=166134-48691**NM:i:3MD:Z:1T33G33A8MC:Z:78MAS:i:66XS:i:63XA:Z:Test_seq,+166134,78M,3;Yt:Z:MU A00126:224:H7HMWDSX3:3:1101:4779:3098113Test_seq1661344378M=21482448691**NM:i:0MD:Z:78MC:Z:78MAS:i:78XS:i:63XA:Z:Test_seq,+214829,5S73M,2;Yt:Z:MU | 9 A00126:224:H7HMWDSX3:3:1101:4779:3098 ! 0 Test_seq 166211 - - MU A00126:224:H7HMWDSX3:3:1101:4779:3098177Test_seq214824578M=166134-48691**NM:i:3MD:Z:1T33G33A8MC:Z:78MAS:i:66XS:i:63XA:Z:Test_seq,+166134,78M,3;Yt:Z:MU A00126:224:H7HMWDSX3:3:1101:4779:3098113Test_seq1661344378M=21482448691**NM:i:0MD:Z:78MC:Z:78MAS:i:78XS:i:63XA:Z:Test_seq,+214829,5S73M,2;Yt:Z:MU |
| 10 A00126:224:H7HMWDSX3:3:1101:2908:3239 ! 0 Test_seq 167696 - - MU A00126:224:H7HMWDSX3:3:1101:2908:3239161Test_seq16733123151M=167546366**NM:i:1MD:Z:37A113MC:Z:151MAS:i:146XS:i:135XA:Z:Test_seq,-213553,151M,4;Yt:Z:MU A00126:224:H7HMWDSX3:3:1101:2908:323981Test_seq16754644151M=167331-366**NM:i:3MD:Z:82G15T30C21MC:Z:151MAS:i:136XS:i:114XA:Z:Test_seq,+213342,118M2I23M2I6M,8;Yt:Z:MU | 10 A00126:224:H7HMWDSX3:3:1101:2908:3239 ! 0 Test_seq 167696 - - MU A00126:224:H7HMWDSX3:3:1101:2908:3239161Test_seq16733123151M=167546366**NM:i:1MD:Z:37A113MC:Z:151MAS:i:146XS:i:135XA:Z:Test_seq,-213553,151M,4;Yt:Z:MU A00126:224:H7HMWDSX3:3:1101:2908:323981Test_seq16754644151M=167331-366**NM:i:3MD:Z:82G15T30C21MC:Z:151MAS:i:136XS:i:114XA:Z:Test_seq,+213342,118M2I23M2I6M,8;Yt:Z:MU |
| 11 A00126:224:H7HMWDSX3:3:1101:27208:4492 Test_seq 194620 Test_seq 194909 + - UU A00126:224:H7HMWDSX3:3:1101:27208:449297Test_seq19462060151M=194778290**NM:i:0MD:Z:151MC:Z:132M19SAS:i:151XS:i:0Yt:Z:UU A00126:224:H7HMWDSX3:3:1101:27208:4492145Test_seq19477860132M19S=194620-290**NM:i:0MD:Z:132MC:Z:151MAS:i:132XS:i:0Yt:Z:UU | 11 A00126:224:H7HMWDSX3:3:1101:27208:4492 Test_seq 194620 Test_seq 194909 + - UU A00126:224:H7HMWDSX3:3:1101:27208:449297Test_seq19462060151M=194778290**NM:i:0MD:Z:151MC:Z:132M19SAS:i:151XS:i:0Yt:Z:UU A00126:224:H7HMWDSX3:3:1101:27208:4492145Test_seq19477860132M19S=194620-290**NM:i:0MD:Z:132MC:Z:151MAS:i:132XS:i:0Yt:Z:UU |
| 12 A00126:224:H7HMWDSX3:3:1101:9344:5306 ! 0 ! 0 - - MM A00126:224:H7HMWDSX3:3:1101:9344:530697Test_seq449503760M=44950360**NM:i:4MD:Z:3T44G2C5G2MC:Z:60MAS:i:44XS:i:40XA:Z:Test_seq,+16926,60M,5;Yt:Z:MM A00126:224:H7HMWDSX3:3:1101:9344:5306145Test_seq4495031260M=449503-60**NM:i:1MD:Z:53T6MC:Z:60MAS:i:55XS:i:50XA:Z:Test_seq,-16926,60M,2;Yt:Z:MM | 12 A00126:224:H7HMWDSX3:3:1101:9344:5306 ! 0 ! 0 - - MM A00126:224:H7HMWDSX3:3:1101:9344:530697Test_seq449503760M=44950360**NM:i:4MD:Z:3T44G2C5G2MC:Z:60MAS:i:44XS:i:40XA:Z:Test_seq,+16926,60M,5;Yt:Z:MM A00126:224:H7HMWDSX3:3:1101:9344:5306145Test_seq4495031260M=449503-60**NM:i:1MD:Z:53T6MC:Z:60MAS:i:55XS:i:50XA:Z:Test_seq,-16926,60M,2;Yt:Z:MM |