Mercurial > repos > iuc > pairtools_sort
diff test-data/pairs_output_yaml.stats @ 5:8ed44487c834 draft
planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
| author | iuc |
|---|---|
| date | Tue, 30 Apr 2024 12:02:44 +0000 |
| parents | d392cfd963f4 |
| children |
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--- a/test-data/pairs_output_yaml.stats Tue Apr 16 12:50:39 2024 +0000 +++ b/test-data/pairs_output_yaml.stats Tue Apr 30 12:02:44 2024 +0000 @@ -3,10 +3,8 @@ total_unmapped: 4 total_single_sided_mapped: 147 total_mapped: 441 - total_dups: 0 total_nodups: 441 cis: 441 - trans: 0 pair_types: UU: 405 NR: 119 @@ -32,6 +30,38 @@ frac_cis_40kb+: 0.1383219954648526 frac_dups: 0.0 complexity_naive: .nan + dist_freq_convergence: + convergence_dist: 421697 + strands_w_max_convergence_dist: ++ + convergence_rel_diff_threshold: 0.05 + n_cis_pairs_below_convergence_dist: + ++: 25 + --: 26 + -+: 7 + +-: 383 + n_cis_pairs_below_convergence_dist_all_strands: 441 + n_cis_pairs_above_convergence_dist_all_strands: 0 + frac_cis_in_cis_below_convergence_dist: + ++: 0.05668934240362812 + --: 0.05895691609977324 + -+: 0.015873015873015872 + +-: 0.8684807256235828 + frac_cis_in_cis_below_convergence_dist_all_strands: 1.0 + frac_cis_in_cis_above_convergence_dist_all_strands: 0.0 + frac_total_mapped_in_cis_below_convergence_dist: + ++: 0.05668934240362812 + --: 0.05895691609977324 + -+: 0.015873015873015872 + +-: 0.8684807256235828 + frac_total_mapped_in_cis_below_convergence_dist_all_strands: 1.0 + frac_total_mapped_in_cis_above_convergence_dist_all_strands: 0.0 + frac_total_nodups_in_cis_below_convergence_dist: + ++: 0.05668934240362812 + --: 0.05895691609977324 + -+: 0.015873015873015872 + +-: 0.8684807256235828 + frac_total_nodups_in_cis_below_convergence_dist_all_strands: 1.0 + frac_total_nodups_in_cis_above_convergence_dist_all_strands: 0.0 chrom_freq: Test_seq/Test_seq: 441 dist_freq: @@ -40,156 +70,292 @@ 1: 0 2: 0 3: 0 + 4: 0 6: 0 + 7: 0 10: 0 + 13: 0 18: 0 - 32: 7 - 56: 9 - 100: 5 - 178: 60 - 316: 284 - 562: 1 - 1000: 1 - 1778: 1 + 24: 0 + 32: 0 + 42: 7 + 56: 7 + 75: 2 + 100: 3 + 133: 2 + 178: 3 + 237: 57 + 316: 171 + 422: 113 + 562: 0 + 750: 1 + 1000: 0 + 1334: 1 + 1778: 0 + 2371: 1 3162: 0 - 5623: 2 - 10000: 2 + 4217: 0 + 5623: 0 + 7499: 2 + 10000: 1 + 13335: 1 17783: 1 + 23714: 0 31623: 0 - 56234: 3 - 100000: 3 - 177828: 4 + 42170: 0 + 56234: 2 + 74989: 1 + 100000: 1 + 133352: 2 + 177828: 3 + 237137: 1 316228: 0 + 421697: 0 562341: 0 + 749894: 0 1000000: 0 + 1333521: 0 1778279: 0 + 2371374: 0 3162278: 0 + 4216965: 0 5623413: 0 + 7498942: 0 10000000: 0 + 13335214: 0 17782794: 0 + 23713737: 0 31622777: 0 + 42169650: 0 56234133: 0 + 74989421: 0 100000000: 0 + 133352143: 0 177827941: 0 + 237137371: 0 316227766: 0 + 421696503: 0 562341325: 0 + 749894209: 0 1000000000: 0 -+: 0: 0 1: 0 2: 0 3: 0 + 4: 0 6: 0 + 7: 0 10: 0 + 13: 0 18: 0 + 24: 0 32: 0 + 42: 0 56: 0 + 75: 0 100: 0 + 133: 0 178: 0 + 237: 0 316: 0 + 422: 0 562: 0 + 750: 0 1000: 0 + 1334: 0 1778: 0 + 2371: 0 3162: 0 + 4217: 0 5623: 0 - 10000: 2 + 7499: 0 + 10000: 1 + 13335: 1 17783: 0 - 31623: 1 + 23714: 0 + 31623: 0 + 42170: 1 56234: 0 - 100000: 3 + 74989: 0 + 100000: 0 + 133352: 3 177828: 0 + 237137: 0 316228: 1 + 421697: 0 562341: 0 + 749894: 0 1000000: 0 + 1333521: 0 1778279: 0 + 2371374: 0 3162278: 0 + 4216965: 0 5623413: 0 + 7498942: 0 10000000: 0 + 13335214: 0 17782794: 0 + 23713737: 0 31622777: 0 + 42169650: 0 56234133: 0 + 74989421: 0 100000000: 0 + 133352143: 0 177827941: 0 + 237137371: 0 316227766: 0 + 421696503: 0 562341325: 0 + 749894209: 0 1000000000: 0 --: 0: 0 1: 0 2: 0 3: 0 + 4: 0 6: 0 + 7: 0 10: 0 + 13: 0 18: 0 + 24: 0 32: 0 + 42: 0 56: 0 + 75: 0 100: 0 + 133: 0 178: 0 + 237: 0 316: 0 + 422: 0 562: 0 + 750: 0 1000: 1 - 1778: 1 + 1334: 0 + 1778: 0 + 2371: 1 3162: 0 + 4217: 0 5623: 0 + 7499: 0 10000: 0 + 13335: 0 17783: 0 - 31623: 21 + 23714: 0 + 31623: 0 + 42170: 21 56234: 1 + 74989: 0 100000: 2 + 133352: 0 177828: 0 + 237137: 0 316228: 0 + 421697: 0 562341: 0 + 749894: 0 1000000: 0 + 1333521: 0 1778279: 0 + 2371374: 0 3162278: 0 + 4216965: 0 5623413: 0 + 7498942: 0 10000000: 0 + 13335214: 0 17782794: 0 + 23713737: 0 31622777: 0 + 42169650: 0 56234133: 0 + 74989421: 0 100000000: 0 + 133352143: 0 177827941: 0 + 237137371: 0 316227766: 0 + 421696503: 0 562341325: 0 + 749894209: 0 1000000000: 0 ++: 0: 0 1: 0 2: 0 3: 0 + 4: 0 6: 0 + 7: 0 10: 0 + 13: 0 18: 0 + 24: 0 32: 0 + 42: 0 56: 0 + 75: 0 100: 0 + 133: 0 178: 0 + 237: 0 316: 0 + 422: 0 562: 0 + 750: 0 1000: 0 + 1334: 0 1778: 1 + 2371: 0 3162: 0 + 4217: 0 5623: 1 + 7499: 0 10000: 1 + 13335: 0 17783: 0 - 31623: 10 - 56234: 3 - 100000: 7 + 23714: 0 + 31623: 0 + 42170: 10 + 56234: 2 + 74989: 1 + 100000: 4 + 133352: 3 177828: 2 + 237137: 0 316228: 0 + 421697: 0 562341: 0 + 749894: 0 1000000: 0 + 1333521: 0 1778279: 0 + 2371374: 0 3162278: 0 + 4216965: 0 5623413: 0 + 7498942: 0 10000000: 0 + 13335214: 0 17782794: 0 + 23713737: 0 31622777: 0 + 42169650: 0 56234133: 0 + 74989421: 0 100000000: 0 + 133352143: 0 177827941: 0 + 237137371: 0 316227766: 0 + 421696503: 0 562341325: 0 + 749894209: 0 1000000000: 0 chromsizes: Test_seq: 450060