Mercurial > repos > iuc > pairtools_sort
view test-data/pairs_output_with_chromsize.stats @ 5:8ed44487c834 draft
planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
author | iuc |
---|---|
date | Tue, 30 Apr 2024 12:02:44 +0000 |
parents | d392cfd963f4 |
children |
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total 592 total_unmapped 4 total_single_sided_mapped 147 total_mapped 441 total_dups 0 total_nodups 441 cis 441 trans 0 pair_types/UU 405 pair_types/NR 119 pair_types/MU 21 pair_types/UR 19 pair_types/RU 17 pair_types/MR 6 pair_types/MM 4 pair_types/NU 1 cis_1kb+ 75 cis_2kb+ 72 cis_4kb+ 70 cis_10kb+ 67 cis_20kb+ 61 cis_40kb+ 61 summary/frac_cis 1.0 summary/frac_cis_1kb+ 0.17006802721088435 summary/frac_cis_2kb+ 0.16326530612244897 summary/frac_cis_4kb+ 0.15873015873015872 summary/frac_cis_10kb+ 0.15192743764172337 summary/frac_cis_20kb+ 0.1383219954648526 summary/frac_cis_40kb+ 0.1383219954648526 summary/frac_dups 0.0 summary/complexity_naive nan summary/dist_freq_convergence/convergence_dist 421697 summary/dist_freq_convergence/strands_w_max_convergence_dist ++ summary/dist_freq_convergence/convergence_rel_diff_threshold 0.05 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/++ 25 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/-- 26 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/-+ 7 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/+- 383 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist_all_strands 441 summary/dist_freq_convergence/n_cis_pairs_above_convergence_dist_all_strands 0 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/++ 0.05668934240362812 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/-- 0.05895691609977324 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/-+ 0.015873015873015872 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/+- 0.8684807256235828 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist_all_strands 1.0 summary/dist_freq_convergence/frac_cis_in_cis_above_convergence_dist_all_strands 0.0 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/++ 0.05668934240362812 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/-- 0.05895691609977324 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/-+ 0.015873015873015872 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/+- 0.8684807256235828 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist_all_strands 1.0 summary/dist_freq_convergence/frac_total_mapped_in_cis_above_convergence_dist_all_strands 0.0 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/++ 0.05668934240362812 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/-- 0.05895691609977324 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/-+ 0.015873015873015872 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/+- 0.8684807256235828 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist_all_strands 1.0 summary/dist_freq_convergence/frac_total_nodups_in_cis_above_convergence_dist_all_strands 0.0 chrom_freq/Test_seq/Test_seq 441 dist_freq/0-1/+- 0 dist_freq/0-1/-+ 0 dist_freq/0-1/-- 0 dist_freq/0-1/++ 0 dist_freq/1-2/+- 0 dist_freq/1-2/-+ 0 dist_freq/1-2/-- 0 dist_freq/1-2/++ 0 dist_freq/2-3/+- 0 dist_freq/2-3/-+ 0 dist_freq/2-3/-- 0 dist_freq/2-3/++ 0 dist_freq/3-4/+- 0 dist_freq/3-4/-+ 0 dist_freq/3-4/-- 0 dist_freq/3-4/++ 0 dist_freq/4-6/+- 0 dist_freq/4-6/-+ 0 dist_freq/4-6/-- 0 dist_freq/4-6/++ 0 dist_freq/6-7/+- 0 dist_freq/6-7/-+ 0 dist_freq/6-7/-- 0 dist_freq/6-7/++ 0 dist_freq/7-10/+- 0 dist_freq/7-10/-+ 0 dist_freq/7-10/-- 0 dist_freq/7-10/++ 0 dist_freq/10-13/+- 0 dist_freq/10-13/-+ 0 dist_freq/10-13/-- 0 dist_freq/10-13/++ 0 dist_freq/13-18/+- 0 dist_freq/13-18/-+ 0 dist_freq/13-18/-- 0 dist_freq/13-18/++ 0 dist_freq/18-24/+- 0 dist_freq/18-24/-+ 0 dist_freq/18-24/-- 0 dist_freq/18-24/++ 0 dist_freq/24-32/+- 0 dist_freq/24-32/-+ 0 dist_freq/24-32/-- 0 dist_freq/24-32/++ 0 dist_freq/32-42/+- 0 dist_freq/32-42/-+ 0 dist_freq/32-42/-- 0 dist_freq/32-42/++ 0 dist_freq/42-56/+- 7 dist_freq/42-56/-+ 0 dist_freq/42-56/-- 0 dist_freq/42-56/++ 0 dist_freq/56-75/+- 7 dist_freq/56-75/-+ 0 dist_freq/56-75/-- 0 dist_freq/56-75/++ 0 dist_freq/75-100/+- 2 dist_freq/75-100/-+ 0 dist_freq/75-100/-- 0 dist_freq/75-100/++ 0 dist_freq/100-133/+- 3 dist_freq/100-133/-+ 0 dist_freq/100-133/-- 0 dist_freq/100-133/++ 0 dist_freq/133-178/+- 2 dist_freq/133-178/-+ 0 dist_freq/133-178/-- 0 dist_freq/133-178/++ 0 dist_freq/178-237/+- 3 dist_freq/178-237/-+ 0 dist_freq/178-237/-- 0 dist_freq/178-237/++ 0 dist_freq/237-316/+- 57 dist_freq/237-316/-+ 0 dist_freq/237-316/-- 0 dist_freq/237-316/++ 0 dist_freq/316-422/+- 171 dist_freq/316-422/-+ 0 dist_freq/316-422/-- 0 dist_freq/316-422/++ 0 dist_freq/422-562/+- 113 dist_freq/422-562/-+ 0 dist_freq/422-562/-- 0 dist_freq/422-562/++ 0 dist_freq/562-750/+- 0 dist_freq/562-750/-+ 0 dist_freq/562-750/-- 0 dist_freq/562-750/++ 0 dist_freq/750-1000/+- 1 dist_freq/750-1000/-+ 0 dist_freq/750-1000/-- 0 dist_freq/750-1000/++ 0 dist_freq/1000-1334/+- 0 dist_freq/1000-1334/-+ 0 dist_freq/1000-1334/-- 1 dist_freq/1000-1334/++ 0 dist_freq/1334-1778/+- 1 dist_freq/1334-1778/-+ 0 dist_freq/1334-1778/-- 0 dist_freq/1334-1778/++ 0 dist_freq/1778-2371/+- 0 dist_freq/1778-2371/-+ 0 dist_freq/1778-2371/-- 0 dist_freq/1778-2371/++ 1 dist_freq/2371-3162/+- 1 dist_freq/2371-3162/-+ 0 dist_freq/2371-3162/-- 1 dist_freq/2371-3162/++ 0 dist_freq/3162-4217/+- 0 dist_freq/3162-4217/-+ 0 dist_freq/3162-4217/-- 0 dist_freq/3162-4217/++ 0 dist_freq/4217-5623/+- 0 dist_freq/4217-5623/-+ 0 dist_freq/4217-5623/-- 0 dist_freq/4217-5623/++ 0 dist_freq/5623-7499/+- 0 dist_freq/5623-7499/-+ 0 dist_freq/5623-7499/-- 0 dist_freq/5623-7499/++ 1 dist_freq/7499-10000/+- 2 dist_freq/7499-10000/-+ 0 dist_freq/7499-10000/-- 0 dist_freq/7499-10000/++ 0 dist_freq/10000-13335/+- 1 dist_freq/10000-13335/-+ 1 dist_freq/10000-13335/-- 0 dist_freq/10000-13335/++ 1 dist_freq/13335-17783/+- 1 dist_freq/13335-17783/-+ 1 dist_freq/13335-17783/-- 0 dist_freq/13335-17783/++ 0 dist_freq/17783-23714/+- 1 dist_freq/17783-23714/-+ 0 dist_freq/17783-23714/-- 0 dist_freq/17783-23714/++ 0 dist_freq/23714-31623/+- 0 dist_freq/23714-31623/-+ 0 dist_freq/23714-31623/-- 0 dist_freq/23714-31623/++ 0 dist_freq/31623-42170/+- 0 dist_freq/31623-42170/-+ 0 dist_freq/31623-42170/-- 0 dist_freq/31623-42170/++ 0 dist_freq/42170-56234/+- 0 dist_freq/42170-56234/-+ 1 dist_freq/42170-56234/-- 21 dist_freq/42170-56234/++ 10 dist_freq/56234-74989/+- 2 dist_freq/56234-74989/-+ 0 dist_freq/56234-74989/-- 1 dist_freq/56234-74989/++ 2 dist_freq/74989-100000/+- 1 dist_freq/74989-100000/-+ 0 dist_freq/74989-100000/-- 0 dist_freq/74989-100000/++ 1 dist_freq/100000-133352/+- 1 dist_freq/100000-133352/-+ 0 dist_freq/100000-133352/-- 2 dist_freq/100000-133352/++ 4 dist_freq/133352-177828/+- 2 dist_freq/133352-177828/-+ 3 dist_freq/133352-177828/-- 0 dist_freq/133352-177828/++ 3 dist_freq/177828-237137/+- 3 dist_freq/177828-237137/-+ 0 dist_freq/177828-237137/-- 0 dist_freq/177828-237137/++ 2 dist_freq/237137-316228/+- 1 dist_freq/237137-316228/-+ 0 dist_freq/237137-316228/-- 0 dist_freq/237137-316228/++ 0 dist_freq/316228-421697/+- 0 dist_freq/316228-421697/-+ 1 dist_freq/316228-421697/-- 0 dist_freq/316228-421697/++ 0 dist_freq/421697-562341/+- 0 dist_freq/421697-562341/-+ 0 dist_freq/421697-562341/-- 0 dist_freq/421697-562341/++ 0 dist_freq/562341-749894/+- 0 dist_freq/562341-749894/-+ 0 dist_freq/562341-749894/-- 0 dist_freq/562341-749894/++ 0 dist_freq/749894-1000000/+- 0 dist_freq/749894-1000000/-+ 0 dist_freq/749894-1000000/-- 0 dist_freq/749894-1000000/++ 0 dist_freq/1000000-1333521/+- 0 dist_freq/1000000-1333521/-+ 0 dist_freq/1000000-1333521/-- 0 dist_freq/1000000-1333521/++ 0 dist_freq/1333521-1778279/+- 0 dist_freq/1333521-1778279/-+ 0 dist_freq/1333521-1778279/-- 0 dist_freq/1333521-1778279/++ 0 dist_freq/1778279-2371374/+- 0 dist_freq/1778279-2371374/-+ 0 dist_freq/1778279-2371374/-- 0 dist_freq/1778279-2371374/++ 0 dist_freq/2371374-3162278/+- 0 dist_freq/2371374-3162278/-+ 0 dist_freq/2371374-3162278/-- 0 dist_freq/2371374-3162278/++ 0 dist_freq/3162278-4216965/+- 0 dist_freq/3162278-4216965/-+ 0 dist_freq/3162278-4216965/-- 0 dist_freq/3162278-4216965/++ 0 dist_freq/4216965-5623413/+- 0 dist_freq/4216965-5623413/-+ 0 dist_freq/4216965-5623413/-- 0 dist_freq/4216965-5623413/++ 0 dist_freq/5623413-7498942/+- 0 dist_freq/5623413-7498942/-+ 0 dist_freq/5623413-7498942/-- 0 dist_freq/5623413-7498942/++ 0 dist_freq/7498942-10000000/+- 0 dist_freq/7498942-10000000/-+ 0 dist_freq/7498942-10000000/-- 0 dist_freq/7498942-10000000/++ 0 dist_freq/10000000-13335214/+- 0 dist_freq/10000000-13335214/-+ 0 dist_freq/10000000-13335214/-- 0 dist_freq/10000000-13335214/++ 0 dist_freq/13335214-17782794/+- 0 dist_freq/13335214-17782794/-+ 0 dist_freq/13335214-17782794/-- 0 dist_freq/13335214-17782794/++ 0 dist_freq/17782794-23713737/+- 0 dist_freq/17782794-23713737/-+ 0 dist_freq/17782794-23713737/-- 0 dist_freq/17782794-23713737/++ 0 dist_freq/23713737-31622777/+- 0 dist_freq/23713737-31622777/-+ 0 dist_freq/23713737-31622777/-- 0 dist_freq/23713737-31622777/++ 0 dist_freq/31622777-42169650/+- 0 dist_freq/31622777-42169650/-+ 0 dist_freq/31622777-42169650/-- 0 dist_freq/31622777-42169650/++ 0 dist_freq/42169650-56234133/+- 0 dist_freq/42169650-56234133/-+ 0 dist_freq/42169650-56234133/-- 0 dist_freq/42169650-56234133/++ 0 dist_freq/56234133-74989421/+- 0 dist_freq/56234133-74989421/-+ 0 dist_freq/56234133-74989421/-- 0 dist_freq/56234133-74989421/++ 0 dist_freq/74989421-100000000/+- 0 dist_freq/74989421-100000000/-+ 0 dist_freq/74989421-100000000/-- 0 dist_freq/74989421-100000000/++ 0 dist_freq/100000000-133352143/+- 0 dist_freq/100000000-133352143/-+ 0 dist_freq/100000000-133352143/-- 0 dist_freq/100000000-133352143/++ 0 dist_freq/133352143-177827941/+- 0 dist_freq/133352143-177827941/-+ 0 dist_freq/133352143-177827941/-- 0 dist_freq/133352143-177827941/++ 0 dist_freq/177827941-237137371/+- 0 dist_freq/177827941-237137371/-+ 0 dist_freq/177827941-237137371/-- 0 dist_freq/177827941-237137371/++ 0 dist_freq/237137371-316227766/+- 0 dist_freq/237137371-316227766/-+ 0 dist_freq/237137371-316227766/-- 0 dist_freq/237137371-316227766/++ 0 dist_freq/316227766-421696503/+- 0 dist_freq/316227766-421696503/-+ 0 dist_freq/316227766-421696503/-- 0 dist_freq/316227766-421696503/++ 0 dist_freq/421696503-562341325/+- 0 dist_freq/421696503-562341325/-+ 0 dist_freq/421696503-562341325/-- 0 dist_freq/421696503-562341325/++ 0 dist_freq/562341325-749894209/+- 0 dist_freq/562341325-749894209/-+ 0 dist_freq/562341325-749894209/-- 0 dist_freq/562341325-749894209/++ 0 dist_freq/749894209-1000000000/+- 0 dist_freq/749894209-1000000000/-+ 0 dist_freq/749894209-1000000000/-- 0 dist_freq/749894209-1000000000/++ 0 dist_freq/1000000000+/+- 0 dist_freq/1000000000+/-+ 0 dist_freq/1000000000+/-- 0 dist_freq/1000000000+/++ 0 chromsizes/Test_seq 450060