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planemo upload for repository https://github.com/open2c/pairtools commit 13aa776596c927adff29d936740ac80f0e37375d
author iuc
date Tue, 21 May 2024 16:04:29 +0000
parents 8ed44487c834
children
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no_filter:
  total: 592
  total_unmapped: 4
  total_single_sided_mapped: 147
  total_mapped: 441
  total_nodups: 441
  cis: 441
  pair_types:
    UU: 405
    NR: 119
    MU: 21
    UR: 19
    RU: 17
    MR: 6
    MM: 4
    NU: 1
  cis_1kb+: 75
  cis_2kb+: 72
  cis_4kb+: 70
  cis_10kb+: 67
  cis_20kb+: 61
  cis_40kb+: 61
  summary:
    frac_cis: 1.0
    frac_cis_1kb+: 0.17006802721088435
    frac_cis_2kb+: 0.16326530612244897
    frac_cis_4kb+: 0.15873015873015872
    frac_cis_10kb+: 0.15192743764172337
    frac_cis_20kb+: 0.1383219954648526
    frac_cis_40kb+: 0.1383219954648526
    frac_dups: 0.0
    complexity_naive: .nan
    dist_freq_convergence:
      convergence_dist: 421697
      strands_w_max_convergence_dist: ++
      convergence_rel_diff_threshold: 0.05
      n_cis_pairs_below_convergence_dist:
        ++: 25
        --: 26
        -+: 7
        +-: 383
      n_cis_pairs_below_convergence_dist_all_strands: 441
      n_cis_pairs_above_convergence_dist_all_strands: 0
      frac_cis_in_cis_below_convergence_dist:
        ++: 0.05668934240362812
        --: 0.05895691609977324
        -+: 0.015873015873015872
        +-: 0.8684807256235828
      frac_cis_in_cis_below_convergence_dist_all_strands: 1.0
      frac_cis_in_cis_above_convergence_dist_all_strands: 0.0
      frac_total_mapped_in_cis_below_convergence_dist:
        ++: 0.05668934240362812
        --: 0.05895691609977324
        -+: 0.015873015873015872
        +-: 0.8684807256235828
      frac_total_mapped_in_cis_below_convergence_dist_all_strands: 1.0
      frac_total_mapped_in_cis_above_convergence_dist_all_strands: 0.0
      frac_total_nodups_in_cis_below_convergence_dist:
        ++: 0.05668934240362812
        --: 0.05895691609977324
        -+: 0.015873015873015872
        +-: 0.8684807256235828
      frac_total_nodups_in_cis_below_convergence_dist_all_strands: 1.0
      frac_total_nodups_in_cis_above_convergence_dist_all_strands: 0.0
  chrom_freq:
    Test_seq/Test_seq: 441
  dist_freq:
    +-:
      0: 0
      1: 0
      2: 0
      3: 0
      4: 0
      6: 0
      7: 0
      10: 0
      13: 0
      18: 0
      24: 0
      32: 0
      42: 7
      56: 7
      75: 2
      100: 3
      133: 2
      178: 3
      237: 57
      316: 171
      422: 113
      562: 0
      750: 1
      1000: 0
      1334: 1
      1778: 0
      2371: 1
      3162: 0
      4217: 0
      5623: 0
      7499: 2
      10000: 1
      13335: 1
      17783: 1
      23714: 0
      31623: 0
      42170: 0
      56234: 2
      74989: 1
      100000: 1
      133352: 2
      177828: 3
      237137: 1
      316228: 0
      421697: 0
      562341: 0
      749894: 0
      1000000: 0
      1333521: 0
      1778279: 0
      2371374: 0
      3162278: 0
      4216965: 0
      5623413: 0
      7498942: 0
      10000000: 0
      13335214: 0
      17782794: 0
      23713737: 0
      31622777: 0
      42169650: 0
      56234133: 0
      74989421: 0
      100000000: 0
      133352143: 0
      177827941: 0
      237137371: 0
      316227766: 0
      421696503: 0
      562341325: 0
      749894209: 0
      1000000000: 0
    -+:
      0: 0
      1: 0
      2: 0
      3: 0
      4: 0
      6: 0
      7: 0
      10: 0
      13: 0
      18: 0
      24: 0
      32: 0
      42: 0
      56: 0
      75: 0
      100: 0
      133: 0
      178: 0
      237: 0
      316: 0
      422: 0
      562: 0
      750: 0
      1000: 0
      1334: 0
      1778: 0
      2371: 0
      3162: 0
      4217: 0
      5623: 0
      7499: 0
      10000: 1
      13335: 1
      17783: 0
      23714: 0
      31623: 0
      42170: 1
      56234: 0
      74989: 0
      100000: 0
      133352: 3
      177828: 0
      237137: 0
      316228: 1
      421697: 0
      562341: 0
      749894: 0
      1000000: 0
      1333521: 0
      1778279: 0
      2371374: 0
      3162278: 0
      4216965: 0
      5623413: 0
      7498942: 0
      10000000: 0
      13335214: 0
      17782794: 0
      23713737: 0
      31622777: 0
      42169650: 0
      56234133: 0
      74989421: 0
      100000000: 0
      133352143: 0
      177827941: 0
      237137371: 0
      316227766: 0
      421696503: 0
      562341325: 0
      749894209: 0
      1000000000: 0
    --:
      0: 0
      1: 0
      2: 0
      3: 0
      4: 0
      6: 0
      7: 0
      10: 0
      13: 0
      18: 0
      24: 0
      32: 0
      42: 0
      56: 0
      75: 0
      100: 0
      133: 0
      178: 0
      237: 0
      316: 0
      422: 0
      562: 0
      750: 0
      1000: 1
      1334: 0
      1778: 0
      2371: 1
      3162: 0
      4217: 0
      5623: 0
      7499: 0
      10000: 0
      13335: 0
      17783: 0
      23714: 0
      31623: 0
      42170: 21
      56234: 1
      74989: 0
      100000: 2
      133352: 0
      177828: 0
      237137: 0
      316228: 0
      421697: 0
      562341: 0
      749894: 0
      1000000: 0
      1333521: 0
      1778279: 0
      2371374: 0
      3162278: 0
      4216965: 0
      5623413: 0
      7498942: 0
      10000000: 0
      13335214: 0
      17782794: 0
      23713737: 0
      31622777: 0
      42169650: 0
      56234133: 0
      74989421: 0
      100000000: 0
      133352143: 0
      177827941: 0
      237137371: 0
      316227766: 0
      421696503: 0
      562341325: 0
      749894209: 0
      1000000000: 0
    ++:
      0: 0
      1: 0
      2: 0
      3: 0
      4: 0
      6: 0
      7: 0
      10: 0
      13: 0
      18: 0
      24: 0
      32: 0
      42: 0
      56: 0
      75: 0
      100: 0
      133: 0
      178: 0
      237: 0
      316: 0
      422: 0
      562: 0
      750: 0
      1000: 0
      1334: 0
      1778: 1
      2371: 0
      3162: 0
      4217: 0
      5623: 1
      7499: 0
      10000: 1
      13335: 0
      17783: 0
      23714: 0
      31623: 0
      42170: 10
      56234: 2
      74989: 1
      100000: 4
      133352: 3
      177828: 2
      237137: 0
      316228: 0
      421697: 0
      562341: 0
      749894: 0
      1000000: 0
      1333521: 0
      1778279: 0
      2371374: 0
      3162278: 0
      4216965: 0
      5623413: 0
      7498942: 0
      10000000: 0
      13335214: 0
      17782794: 0
      23713737: 0
      31622777: 0
      42169650: 0
      56234133: 0
      74989421: 0
      100000000: 0
      133352143: 0
      177827941: 0
      237137371: 0
      316227766: 0
      421696503: 0
      562341325: 0
      749894209: 0
      1000000000: 0
  chromsizes:
    Test_seq: 450060