Mercurial > repos > iuc > pairtools_split
comparison test-data/pairs_output_yaml.stats @ 3:060f0fed864e draft
planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
| author | iuc |
|---|---|
| date | Tue, 30 Apr 2024 12:02:15 +0000 |
| parents | 2c87e49a6407 |
| children |
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| 2:53d73d58e105 | 3:060f0fed864e |
|---|---|
| 1 no_filter: | 1 no_filter: |
| 2 total: 592 | 2 total: 592 |
| 3 total_unmapped: 4 | 3 total_unmapped: 4 |
| 4 total_single_sided_mapped: 147 | 4 total_single_sided_mapped: 147 |
| 5 total_mapped: 441 | 5 total_mapped: 441 |
| 6 total_dups: 0 | |
| 7 total_nodups: 441 | 6 total_nodups: 441 |
| 8 cis: 441 | 7 cis: 441 |
| 9 trans: 0 | |
| 10 pair_types: | 8 pair_types: |
| 11 UU: 405 | 9 UU: 405 |
| 12 NR: 119 | 10 NR: 119 |
| 13 MU: 21 | 11 MU: 21 |
| 14 UR: 19 | 12 UR: 19 |
| 30 frac_cis_10kb+: 0.15192743764172337 | 28 frac_cis_10kb+: 0.15192743764172337 |
| 31 frac_cis_20kb+: 0.1383219954648526 | 29 frac_cis_20kb+: 0.1383219954648526 |
| 32 frac_cis_40kb+: 0.1383219954648526 | 30 frac_cis_40kb+: 0.1383219954648526 |
| 33 frac_dups: 0.0 | 31 frac_dups: 0.0 |
| 34 complexity_naive: .nan | 32 complexity_naive: .nan |
| 33 dist_freq_convergence: | |
| 34 convergence_dist: 421697 | |
| 35 strands_w_max_convergence_dist: ++ | |
| 36 convergence_rel_diff_threshold: 0.05 | |
| 37 n_cis_pairs_below_convergence_dist: | |
| 38 ++: 25 | |
| 39 --: 26 | |
| 40 -+: 7 | |
| 41 +-: 383 | |
| 42 n_cis_pairs_below_convergence_dist_all_strands: 441 | |
| 43 n_cis_pairs_above_convergence_dist_all_strands: 0 | |
| 44 frac_cis_in_cis_below_convergence_dist: | |
| 45 ++: 0.05668934240362812 | |
| 46 --: 0.05895691609977324 | |
| 47 -+: 0.015873015873015872 | |
| 48 +-: 0.8684807256235828 | |
| 49 frac_cis_in_cis_below_convergence_dist_all_strands: 1.0 | |
| 50 frac_cis_in_cis_above_convergence_dist_all_strands: 0.0 | |
| 51 frac_total_mapped_in_cis_below_convergence_dist: | |
| 52 ++: 0.05668934240362812 | |
| 53 --: 0.05895691609977324 | |
| 54 -+: 0.015873015873015872 | |
| 55 +-: 0.8684807256235828 | |
| 56 frac_total_mapped_in_cis_below_convergence_dist_all_strands: 1.0 | |
| 57 frac_total_mapped_in_cis_above_convergence_dist_all_strands: 0.0 | |
| 58 frac_total_nodups_in_cis_below_convergence_dist: | |
| 59 ++: 0.05668934240362812 | |
| 60 --: 0.05895691609977324 | |
| 61 -+: 0.015873015873015872 | |
| 62 +-: 0.8684807256235828 | |
| 63 frac_total_nodups_in_cis_below_convergence_dist_all_strands: 1.0 | |
| 64 frac_total_nodups_in_cis_above_convergence_dist_all_strands: 0.0 | |
| 35 chrom_freq: | 65 chrom_freq: |
| 36 Test_seq/Test_seq: 441 | 66 Test_seq/Test_seq: 441 |
| 37 dist_freq: | 67 dist_freq: |
| 38 +-: | 68 +-: |
| 39 0: 0 | 69 0: 0 |
| 40 1: 0 | 70 1: 0 |
| 41 2: 0 | 71 2: 0 |
| 42 3: 0 | 72 3: 0 |
| 73 4: 0 | |
| 43 6: 0 | 74 6: 0 |
| 75 7: 0 | |
| 44 10: 0 | 76 10: 0 |
| 77 13: 0 | |
| 45 18: 0 | 78 18: 0 |
| 46 32: 7 | 79 24: 0 |
| 47 56: 9 | 80 32: 0 |
| 48 100: 5 | 81 42: 7 |
| 49 178: 60 | 82 56: 7 |
| 50 316: 284 | 83 75: 2 |
| 51 562: 1 | 84 100: 3 |
| 52 1000: 1 | 85 133: 2 |
| 53 1778: 1 | 86 178: 3 |
| 87 237: 57 | |
| 88 316: 171 | |
| 89 422: 113 | |
| 90 562: 0 | |
| 91 750: 1 | |
| 92 1000: 0 | |
| 93 1334: 1 | |
| 94 1778: 0 | |
| 95 2371: 1 | |
| 54 3162: 0 | 96 3162: 0 |
| 55 5623: 2 | 97 4217: 0 |
| 56 10000: 2 | 98 5623: 0 |
| 99 7499: 2 | |
| 100 10000: 1 | |
| 101 13335: 1 | |
| 57 17783: 1 | 102 17783: 1 |
| 103 23714: 0 | |
| 58 31623: 0 | 104 31623: 0 |
| 59 56234: 3 | 105 42170: 0 |
| 60 100000: 3 | 106 56234: 2 |
| 61 177828: 4 | 107 74989: 1 |
| 108 100000: 1 | |
| 109 133352: 2 | |
| 110 177828: 3 | |
| 111 237137: 1 | |
| 62 316228: 0 | 112 316228: 0 |
| 113 421697: 0 | |
| 63 562341: 0 | 114 562341: 0 |
| 115 749894: 0 | |
| 64 1000000: 0 | 116 1000000: 0 |
| 117 1333521: 0 | |
| 65 1778279: 0 | 118 1778279: 0 |
| 119 2371374: 0 | |
| 66 3162278: 0 | 120 3162278: 0 |
| 121 4216965: 0 | |
| 67 5623413: 0 | 122 5623413: 0 |
| 123 7498942: 0 | |
| 68 10000000: 0 | 124 10000000: 0 |
| 125 13335214: 0 | |
| 69 17782794: 0 | 126 17782794: 0 |
| 127 23713737: 0 | |
| 70 31622777: 0 | 128 31622777: 0 |
| 129 42169650: 0 | |
| 71 56234133: 0 | 130 56234133: 0 |
| 131 74989421: 0 | |
| 72 100000000: 0 | 132 100000000: 0 |
| 133 133352143: 0 | |
| 73 177827941: 0 | 134 177827941: 0 |
| 135 237137371: 0 | |
| 74 316227766: 0 | 136 316227766: 0 |
| 137 421696503: 0 | |
| 75 562341325: 0 | 138 562341325: 0 |
| 139 749894209: 0 | |
| 76 1000000000: 0 | 140 1000000000: 0 |
| 77 -+: | 141 -+: |
| 78 0: 0 | 142 0: 0 |
| 79 1: 0 | 143 1: 0 |
| 80 2: 0 | 144 2: 0 |
| 81 3: 0 | 145 3: 0 |
| 146 4: 0 | |
| 82 6: 0 | 147 6: 0 |
| 148 7: 0 | |
| 83 10: 0 | 149 10: 0 |
| 150 13: 0 | |
| 84 18: 0 | 151 18: 0 |
| 152 24: 0 | |
| 85 32: 0 | 153 32: 0 |
| 154 42: 0 | |
| 86 56: 0 | 155 56: 0 |
| 156 75: 0 | |
| 87 100: 0 | 157 100: 0 |
| 158 133: 0 | |
| 88 178: 0 | 159 178: 0 |
| 160 237: 0 | |
| 89 316: 0 | 161 316: 0 |
| 162 422: 0 | |
| 90 562: 0 | 163 562: 0 |
| 164 750: 0 | |
| 91 1000: 0 | 165 1000: 0 |
| 166 1334: 0 | |
| 92 1778: 0 | 167 1778: 0 |
| 168 2371: 0 | |
| 93 3162: 0 | 169 3162: 0 |
| 170 4217: 0 | |
| 94 5623: 0 | 171 5623: 0 |
| 95 10000: 2 | 172 7499: 0 |
| 173 10000: 1 | |
| 174 13335: 1 | |
| 96 17783: 0 | 175 17783: 0 |
| 97 31623: 1 | 176 23714: 0 |
| 177 31623: 0 | |
| 178 42170: 1 | |
| 98 56234: 0 | 179 56234: 0 |
| 99 100000: 3 | 180 74989: 0 |
| 181 100000: 0 | |
| 182 133352: 3 | |
| 100 177828: 0 | 183 177828: 0 |
| 184 237137: 0 | |
| 101 316228: 1 | 185 316228: 1 |
| 186 421697: 0 | |
| 102 562341: 0 | 187 562341: 0 |
| 188 749894: 0 | |
| 103 1000000: 0 | 189 1000000: 0 |
| 190 1333521: 0 | |
| 104 1778279: 0 | 191 1778279: 0 |
| 192 2371374: 0 | |
| 105 3162278: 0 | 193 3162278: 0 |
| 194 4216965: 0 | |
| 106 5623413: 0 | 195 5623413: 0 |
| 196 7498942: 0 | |
| 107 10000000: 0 | 197 10000000: 0 |
| 198 13335214: 0 | |
| 108 17782794: 0 | 199 17782794: 0 |
| 200 23713737: 0 | |
| 109 31622777: 0 | 201 31622777: 0 |
| 202 42169650: 0 | |
| 110 56234133: 0 | 203 56234133: 0 |
| 204 74989421: 0 | |
| 111 100000000: 0 | 205 100000000: 0 |
| 206 133352143: 0 | |
| 112 177827941: 0 | 207 177827941: 0 |
| 208 237137371: 0 | |
| 113 316227766: 0 | 209 316227766: 0 |
| 210 421696503: 0 | |
| 114 562341325: 0 | 211 562341325: 0 |
| 212 749894209: 0 | |
| 115 1000000000: 0 | 213 1000000000: 0 |
| 116 --: | 214 --: |
| 117 0: 0 | 215 0: 0 |
| 118 1: 0 | 216 1: 0 |
| 119 2: 0 | 217 2: 0 |
| 120 3: 0 | 218 3: 0 |
| 219 4: 0 | |
| 121 6: 0 | 220 6: 0 |
| 221 7: 0 | |
| 122 10: 0 | 222 10: 0 |
| 223 13: 0 | |
| 123 18: 0 | 224 18: 0 |
| 225 24: 0 | |
| 124 32: 0 | 226 32: 0 |
| 227 42: 0 | |
| 125 56: 0 | 228 56: 0 |
| 229 75: 0 | |
| 126 100: 0 | 230 100: 0 |
| 231 133: 0 | |
| 127 178: 0 | 232 178: 0 |
| 233 237: 0 | |
| 128 316: 0 | 234 316: 0 |
| 235 422: 0 | |
| 129 562: 0 | 236 562: 0 |
| 237 750: 0 | |
| 130 1000: 1 | 238 1000: 1 |
| 131 1778: 1 | 239 1334: 0 |
| 240 1778: 0 | |
| 241 2371: 1 | |
| 132 3162: 0 | 242 3162: 0 |
| 243 4217: 0 | |
| 133 5623: 0 | 244 5623: 0 |
| 245 7499: 0 | |
| 134 10000: 0 | 246 10000: 0 |
| 247 13335: 0 | |
| 135 17783: 0 | 248 17783: 0 |
| 136 31623: 21 | 249 23714: 0 |
| 250 31623: 0 | |
| 251 42170: 21 | |
| 137 56234: 1 | 252 56234: 1 |
| 253 74989: 0 | |
| 138 100000: 2 | 254 100000: 2 |
| 255 133352: 0 | |
| 139 177828: 0 | 256 177828: 0 |
| 257 237137: 0 | |
| 140 316228: 0 | 258 316228: 0 |
| 259 421697: 0 | |
| 141 562341: 0 | 260 562341: 0 |
| 261 749894: 0 | |
| 142 1000000: 0 | 262 1000000: 0 |
| 263 1333521: 0 | |
| 143 1778279: 0 | 264 1778279: 0 |
| 265 2371374: 0 | |
| 144 3162278: 0 | 266 3162278: 0 |
| 267 4216965: 0 | |
| 145 5623413: 0 | 268 5623413: 0 |
| 269 7498942: 0 | |
| 146 10000000: 0 | 270 10000000: 0 |
| 271 13335214: 0 | |
| 147 17782794: 0 | 272 17782794: 0 |
| 273 23713737: 0 | |
| 148 31622777: 0 | 274 31622777: 0 |
| 275 42169650: 0 | |
| 149 56234133: 0 | 276 56234133: 0 |
| 277 74989421: 0 | |
| 150 100000000: 0 | 278 100000000: 0 |
| 279 133352143: 0 | |
| 151 177827941: 0 | 280 177827941: 0 |
| 281 237137371: 0 | |
| 152 316227766: 0 | 282 316227766: 0 |
| 283 421696503: 0 | |
| 153 562341325: 0 | 284 562341325: 0 |
| 285 749894209: 0 | |
| 154 1000000000: 0 | 286 1000000000: 0 |
| 155 ++: | 287 ++: |
| 156 0: 0 | 288 0: 0 |
| 157 1: 0 | 289 1: 0 |
| 158 2: 0 | 290 2: 0 |
| 159 3: 0 | 291 3: 0 |
| 292 4: 0 | |
| 160 6: 0 | 293 6: 0 |
| 294 7: 0 | |
| 161 10: 0 | 295 10: 0 |
| 296 13: 0 | |
| 162 18: 0 | 297 18: 0 |
| 298 24: 0 | |
| 163 32: 0 | 299 32: 0 |
| 300 42: 0 | |
| 164 56: 0 | 301 56: 0 |
| 302 75: 0 | |
| 165 100: 0 | 303 100: 0 |
| 304 133: 0 | |
| 166 178: 0 | 305 178: 0 |
| 306 237: 0 | |
| 167 316: 0 | 307 316: 0 |
| 308 422: 0 | |
| 168 562: 0 | 309 562: 0 |
| 310 750: 0 | |
| 169 1000: 0 | 311 1000: 0 |
| 312 1334: 0 | |
| 170 1778: 1 | 313 1778: 1 |
| 314 2371: 0 | |
| 171 3162: 0 | 315 3162: 0 |
| 316 4217: 0 | |
| 172 5623: 1 | 317 5623: 1 |
| 318 7499: 0 | |
| 173 10000: 1 | 319 10000: 1 |
| 320 13335: 0 | |
| 174 17783: 0 | 321 17783: 0 |
| 175 31623: 10 | 322 23714: 0 |
| 176 56234: 3 | 323 31623: 0 |
| 177 100000: 7 | 324 42170: 10 |
| 325 56234: 2 | |
| 326 74989: 1 | |
| 327 100000: 4 | |
| 328 133352: 3 | |
| 178 177828: 2 | 329 177828: 2 |
| 330 237137: 0 | |
| 179 316228: 0 | 331 316228: 0 |
| 332 421697: 0 | |
| 180 562341: 0 | 333 562341: 0 |
| 334 749894: 0 | |
| 181 1000000: 0 | 335 1000000: 0 |
| 336 1333521: 0 | |
| 182 1778279: 0 | 337 1778279: 0 |
| 338 2371374: 0 | |
| 183 3162278: 0 | 339 3162278: 0 |
| 340 4216965: 0 | |
| 184 5623413: 0 | 341 5623413: 0 |
| 342 7498942: 0 | |
| 185 10000000: 0 | 343 10000000: 0 |
| 344 13335214: 0 | |
| 186 17782794: 0 | 345 17782794: 0 |
| 346 23713737: 0 | |
| 187 31622777: 0 | 347 31622777: 0 |
| 348 42169650: 0 | |
| 188 56234133: 0 | 349 56234133: 0 |
| 350 74989421: 0 | |
| 189 100000000: 0 | 351 100000000: 0 |
| 352 133352143: 0 | |
| 190 177827941: 0 | 353 177827941: 0 |
| 354 237137371: 0 | |
| 191 316227766: 0 | 355 316227766: 0 |
| 356 421696503: 0 | |
| 192 562341325: 0 | 357 562341325: 0 |
| 358 749894209: 0 | |
| 193 1000000000: 0 | 359 1000000000: 0 |
| 194 chromsizes: | 360 chromsizes: |
| 195 Test_seq: 450060 | 361 Test_seq: 450060 |