Mercurial > repos > iuc > pairtools_split
comparison test-data/pairs_output_yaml.stats @ 3:060f0fed864e draft
planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
author | iuc |
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date | Tue, 30 Apr 2024 12:02:15 +0000 |
parents | 2c87e49a6407 |
children |
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2:53d73d58e105 | 3:060f0fed864e |
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1 no_filter: | 1 no_filter: |
2 total: 592 | 2 total: 592 |
3 total_unmapped: 4 | 3 total_unmapped: 4 |
4 total_single_sided_mapped: 147 | 4 total_single_sided_mapped: 147 |
5 total_mapped: 441 | 5 total_mapped: 441 |
6 total_dups: 0 | |
7 total_nodups: 441 | 6 total_nodups: 441 |
8 cis: 441 | 7 cis: 441 |
9 trans: 0 | |
10 pair_types: | 8 pair_types: |
11 UU: 405 | 9 UU: 405 |
12 NR: 119 | 10 NR: 119 |
13 MU: 21 | 11 MU: 21 |
14 UR: 19 | 12 UR: 19 |
30 frac_cis_10kb+: 0.15192743764172337 | 28 frac_cis_10kb+: 0.15192743764172337 |
31 frac_cis_20kb+: 0.1383219954648526 | 29 frac_cis_20kb+: 0.1383219954648526 |
32 frac_cis_40kb+: 0.1383219954648526 | 30 frac_cis_40kb+: 0.1383219954648526 |
33 frac_dups: 0.0 | 31 frac_dups: 0.0 |
34 complexity_naive: .nan | 32 complexity_naive: .nan |
33 dist_freq_convergence: | |
34 convergence_dist: 421697 | |
35 strands_w_max_convergence_dist: ++ | |
36 convergence_rel_diff_threshold: 0.05 | |
37 n_cis_pairs_below_convergence_dist: | |
38 ++: 25 | |
39 --: 26 | |
40 -+: 7 | |
41 +-: 383 | |
42 n_cis_pairs_below_convergence_dist_all_strands: 441 | |
43 n_cis_pairs_above_convergence_dist_all_strands: 0 | |
44 frac_cis_in_cis_below_convergence_dist: | |
45 ++: 0.05668934240362812 | |
46 --: 0.05895691609977324 | |
47 -+: 0.015873015873015872 | |
48 +-: 0.8684807256235828 | |
49 frac_cis_in_cis_below_convergence_dist_all_strands: 1.0 | |
50 frac_cis_in_cis_above_convergence_dist_all_strands: 0.0 | |
51 frac_total_mapped_in_cis_below_convergence_dist: | |
52 ++: 0.05668934240362812 | |
53 --: 0.05895691609977324 | |
54 -+: 0.015873015873015872 | |
55 +-: 0.8684807256235828 | |
56 frac_total_mapped_in_cis_below_convergence_dist_all_strands: 1.0 | |
57 frac_total_mapped_in_cis_above_convergence_dist_all_strands: 0.0 | |
58 frac_total_nodups_in_cis_below_convergence_dist: | |
59 ++: 0.05668934240362812 | |
60 --: 0.05895691609977324 | |
61 -+: 0.015873015873015872 | |
62 +-: 0.8684807256235828 | |
63 frac_total_nodups_in_cis_below_convergence_dist_all_strands: 1.0 | |
64 frac_total_nodups_in_cis_above_convergence_dist_all_strands: 0.0 | |
35 chrom_freq: | 65 chrom_freq: |
36 Test_seq/Test_seq: 441 | 66 Test_seq/Test_seq: 441 |
37 dist_freq: | 67 dist_freq: |
38 +-: | 68 +-: |
39 0: 0 | 69 0: 0 |
40 1: 0 | 70 1: 0 |
41 2: 0 | 71 2: 0 |
42 3: 0 | 72 3: 0 |
73 4: 0 | |
43 6: 0 | 74 6: 0 |
75 7: 0 | |
44 10: 0 | 76 10: 0 |
77 13: 0 | |
45 18: 0 | 78 18: 0 |
46 32: 7 | 79 24: 0 |
47 56: 9 | 80 32: 0 |
48 100: 5 | 81 42: 7 |
49 178: 60 | 82 56: 7 |
50 316: 284 | 83 75: 2 |
51 562: 1 | 84 100: 3 |
52 1000: 1 | 85 133: 2 |
53 1778: 1 | 86 178: 3 |
87 237: 57 | |
88 316: 171 | |
89 422: 113 | |
90 562: 0 | |
91 750: 1 | |
92 1000: 0 | |
93 1334: 1 | |
94 1778: 0 | |
95 2371: 1 | |
54 3162: 0 | 96 3162: 0 |
55 5623: 2 | 97 4217: 0 |
56 10000: 2 | 98 5623: 0 |
99 7499: 2 | |
100 10000: 1 | |
101 13335: 1 | |
57 17783: 1 | 102 17783: 1 |
103 23714: 0 | |
58 31623: 0 | 104 31623: 0 |
59 56234: 3 | 105 42170: 0 |
60 100000: 3 | 106 56234: 2 |
61 177828: 4 | 107 74989: 1 |
108 100000: 1 | |
109 133352: 2 | |
110 177828: 3 | |
111 237137: 1 | |
62 316228: 0 | 112 316228: 0 |
113 421697: 0 | |
63 562341: 0 | 114 562341: 0 |
115 749894: 0 | |
64 1000000: 0 | 116 1000000: 0 |
117 1333521: 0 | |
65 1778279: 0 | 118 1778279: 0 |
119 2371374: 0 | |
66 3162278: 0 | 120 3162278: 0 |
121 4216965: 0 | |
67 5623413: 0 | 122 5623413: 0 |
123 7498942: 0 | |
68 10000000: 0 | 124 10000000: 0 |
125 13335214: 0 | |
69 17782794: 0 | 126 17782794: 0 |
127 23713737: 0 | |
70 31622777: 0 | 128 31622777: 0 |
129 42169650: 0 | |
71 56234133: 0 | 130 56234133: 0 |
131 74989421: 0 | |
72 100000000: 0 | 132 100000000: 0 |
133 133352143: 0 | |
73 177827941: 0 | 134 177827941: 0 |
135 237137371: 0 | |
74 316227766: 0 | 136 316227766: 0 |
137 421696503: 0 | |
75 562341325: 0 | 138 562341325: 0 |
139 749894209: 0 | |
76 1000000000: 0 | 140 1000000000: 0 |
77 -+: | 141 -+: |
78 0: 0 | 142 0: 0 |
79 1: 0 | 143 1: 0 |
80 2: 0 | 144 2: 0 |
81 3: 0 | 145 3: 0 |
146 4: 0 | |
82 6: 0 | 147 6: 0 |
148 7: 0 | |
83 10: 0 | 149 10: 0 |
150 13: 0 | |
84 18: 0 | 151 18: 0 |
152 24: 0 | |
85 32: 0 | 153 32: 0 |
154 42: 0 | |
86 56: 0 | 155 56: 0 |
156 75: 0 | |
87 100: 0 | 157 100: 0 |
158 133: 0 | |
88 178: 0 | 159 178: 0 |
160 237: 0 | |
89 316: 0 | 161 316: 0 |
162 422: 0 | |
90 562: 0 | 163 562: 0 |
164 750: 0 | |
91 1000: 0 | 165 1000: 0 |
166 1334: 0 | |
92 1778: 0 | 167 1778: 0 |
168 2371: 0 | |
93 3162: 0 | 169 3162: 0 |
170 4217: 0 | |
94 5623: 0 | 171 5623: 0 |
95 10000: 2 | 172 7499: 0 |
173 10000: 1 | |
174 13335: 1 | |
96 17783: 0 | 175 17783: 0 |
97 31623: 1 | 176 23714: 0 |
177 31623: 0 | |
178 42170: 1 | |
98 56234: 0 | 179 56234: 0 |
99 100000: 3 | 180 74989: 0 |
181 100000: 0 | |
182 133352: 3 | |
100 177828: 0 | 183 177828: 0 |
184 237137: 0 | |
101 316228: 1 | 185 316228: 1 |
186 421697: 0 | |
102 562341: 0 | 187 562341: 0 |
188 749894: 0 | |
103 1000000: 0 | 189 1000000: 0 |
190 1333521: 0 | |
104 1778279: 0 | 191 1778279: 0 |
192 2371374: 0 | |
105 3162278: 0 | 193 3162278: 0 |
194 4216965: 0 | |
106 5623413: 0 | 195 5623413: 0 |
196 7498942: 0 | |
107 10000000: 0 | 197 10000000: 0 |
198 13335214: 0 | |
108 17782794: 0 | 199 17782794: 0 |
200 23713737: 0 | |
109 31622777: 0 | 201 31622777: 0 |
202 42169650: 0 | |
110 56234133: 0 | 203 56234133: 0 |
204 74989421: 0 | |
111 100000000: 0 | 205 100000000: 0 |
206 133352143: 0 | |
112 177827941: 0 | 207 177827941: 0 |
208 237137371: 0 | |
113 316227766: 0 | 209 316227766: 0 |
210 421696503: 0 | |
114 562341325: 0 | 211 562341325: 0 |
212 749894209: 0 | |
115 1000000000: 0 | 213 1000000000: 0 |
116 --: | 214 --: |
117 0: 0 | 215 0: 0 |
118 1: 0 | 216 1: 0 |
119 2: 0 | 217 2: 0 |
120 3: 0 | 218 3: 0 |
219 4: 0 | |
121 6: 0 | 220 6: 0 |
221 7: 0 | |
122 10: 0 | 222 10: 0 |
223 13: 0 | |
123 18: 0 | 224 18: 0 |
225 24: 0 | |
124 32: 0 | 226 32: 0 |
227 42: 0 | |
125 56: 0 | 228 56: 0 |
229 75: 0 | |
126 100: 0 | 230 100: 0 |
231 133: 0 | |
127 178: 0 | 232 178: 0 |
233 237: 0 | |
128 316: 0 | 234 316: 0 |
235 422: 0 | |
129 562: 0 | 236 562: 0 |
237 750: 0 | |
130 1000: 1 | 238 1000: 1 |
131 1778: 1 | 239 1334: 0 |
240 1778: 0 | |
241 2371: 1 | |
132 3162: 0 | 242 3162: 0 |
243 4217: 0 | |
133 5623: 0 | 244 5623: 0 |
245 7499: 0 | |
134 10000: 0 | 246 10000: 0 |
247 13335: 0 | |
135 17783: 0 | 248 17783: 0 |
136 31623: 21 | 249 23714: 0 |
250 31623: 0 | |
251 42170: 21 | |
137 56234: 1 | 252 56234: 1 |
253 74989: 0 | |
138 100000: 2 | 254 100000: 2 |
255 133352: 0 | |
139 177828: 0 | 256 177828: 0 |
257 237137: 0 | |
140 316228: 0 | 258 316228: 0 |
259 421697: 0 | |
141 562341: 0 | 260 562341: 0 |
261 749894: 0 | |
142 1000000: 0 | 262 1000000: 0 |
263 1333521: 0 | |
143 1778279: 0 | 264 1778279: 0 |
265 2371374: 0 | |
144 3162278: 0 | 266 3162278: 0 |
267 4216965: 0 | |
145 5623413: 0 | 268 5623413: 0 |
269 7498942: 0 | |
146 10000000: 0 | 270 10000000: 0 |
271 13335214: 0 | |
147 17782794: 0 | 272 17782794: 0 |
273 23713737: 0 | |
148 31622777: 0 | 274 31622777: 0 |
275 42169650: 0 | |
149 56234133: 0 | 276 56234133: 0 |
277 74989421: 0 | |
150 100000000: 0 | 278 100000000: 0 |
279 133352143: 0 | |
151 177827941: 0 | 280 177827941: 0 |
281 237137371: 0 | |
152 316227766: 0 | 282 316227766: 0 |
283 421696503: 0 | |
153 562341325: 0 | 284 562341325: 0 |
285 749894209: 0 | |
154 1000000000: 0 | 286 1000000000: 0 |
155 ++: | 287 ++: |
156 0: 0 | 288 0: 0 |
157 1: 0 | 289 1: 0 |
158 2: 0 | 290 2: 0 |
159 3: 0 | 291 3: 0 |
292 4: 0 | |
160 6: 0 | 293 6: 0 |
294 7: 0 | |
161 10: 0 | 295 10: 0 |
296 13: 0 | |
162 18: 0 | 297 18: 0 |
298 24: 0 | |
163 32: 0 | 299 32: 0 |
300 42: 0 | |
164 56: 0 | 301 56: 0 |
302 75: 0 | |
165 100: 0 | 303 100: 0 |
304 133: 0 | |
166 178: 0 | 305 178: 0 |
306 237: 0 | |
167 316: 0 | 307 316: 0 |
308 422: 0 | |
168 562: 0 | 309 562: 0 |
310 750: 0 | |
169 1000: 0 | 311 1000: 0 |
312 1334: 0 | |
170 1778: 1 | 313 1778: 1 |
314 2371: 0 | |
171 3162: 0 | 315 3162: 0 |
316 4217: 0 | |
172 5623: 1 | 317 5623: 1 |
318 7499: 0 | |
173 10000: 1 | 319 10000: 1 |
320 13335: 0 | |
174 17783: 0 | 321 17783: 0 |
175 31623: 10 | 322 23714: 0 |
176 56234: 3 | 323 31623: 0 |
177 100000: 7 | 324 42170: 10 |
325 56234: 2 | |
326 74989: 1 | |
327 100000: 4 | |
328 133352: 3 | |
178 177828: 2 | 329 177828: 2 |
330 237137: 0 | |
179 316228: 0 | 331 316228: 0 |
332 421697: 0 | |
180 562341: 0 | 333 562341: 0 |
334 749894: 0 | |
181 1000000: 0 | 335 1000000: 0 |
336 1333521: 0 | |
182 1778279: 0 | 337 1778279: 0 |
338 2371374: 0 | |
183 3162278: 0 | 339 3162278: 0 |
340 4216965: 0 | |
184 5623413: 0 | 341 5623413: 0 |
342 7498942: 0 | |
185 10000000: 0 | 343 10000000: 0 |
344 13335214: 0 | |
186 17782794: 0 | 345 17782794: 0 |
346 23713737: 0 | |
187 31622777: 0 | 347 31622777: 0 |
348 42169650: 0 | |
188 56234133: 0 | 349 56234133: 0 |
350 74989421: 0 | |
189 100000000: 0 | 351 100000000: 0 |
352 133352143: 0 | |
190 177827941: 0 | 353 177827941: 0 |
354 237137371: 0 | |
191 316227766: 0 | 355 316227766: 0 |
356 421696503: 0 | |
192 562341325: 0 | 357 562341325: 0 |
358 749894209: 0 | |
193 1000000000: 0 | 359 1000000000: 0 |
194 chromsizes: | 360 chromsizes: |
195 Test_seq: 450060 | 361 Test_seq: 450060 |