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view test-data/output_dedup_pairs.stats @ 3:060f0fed864e draft

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planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
author iuc
date Tue, 30 Apr 2024 12:02:15 +0000
parents bffcba7ce9b5
children
line wrap: on
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total	1992
total_unmapped	914
total_single_sided_mapped	287
total_mapped	791
total_dups	9
total_nodups	782
cis	597
trans	185
pair_types/NN	853
pair_types/UU	782
pair_types/NU	234
pair_types/MU	53
pair_types/MM	40
pair_types/NM	21
pair_types/DD	9
cis_1kb+	185
cis_2kb+	171
cis_4kb+	151
cis_10kb+	114
cis_20kb+	80
cis_40kb+	46
summary/frac_cis	0.7634271099744245
summary/frac_cis_1kb+	0.23657289002557544
summary/frac_cis_2kb+	0.2186700767263427
summary/frac_cis_4kb+	0.19309462915601022
summary/frac_cis_10kb+	0.14578005115089515
summary/frac_cis_20kb+	0.10230179028132992
summary/frac_cis_40kb+	0.058823529411764705
summary/frac_dups	0.011378002528445006
summary/complexity_naive	34495.88583157276
summary/dist_freq_convergence/convergence_dist	1333521
summary/dist_freq_convergence/strands_w_max_convergence_dist	++
summary/dist_freq_convergence/convergence_rel_diff_threshold	0.05
summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/++	49
summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/--	58
summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/-+	65
summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/+-	425
summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist_all_strands	597
summary/dist_freq_convergence/n_cis_pairs_above_convergence_dist_all_strands	0
summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/++	0.08207705192629816
summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/--	0.09715242881072027
summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/-+	0.10887772194304858
summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/+-	0.711892797319933
summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist_all_strands	1.0
summary/dist_freq_convergence/frac_cis_in_cis_above_convergence_dist_all_strands	0.0
summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/++	0.061946902654867256
summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/--	0.07332490518331226
summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/-+	0.08217446270543616
summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/+-	0.5372945638432364
summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist_all_strands	0.754740834386852
summary/dist_freq_convergence/frac_total_mapped_in_cis_above_convergence_dist_all_strands	0.0
summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/++	0.06265984654731457
summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/--	0.0741687979539642
summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/-+	0.08312020460358056
summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/+-	0.5434782608695652
summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist_all_strands	0.7634271099744245
summary/dist_freq_convergence/frac_total_nodups_in_cis_above_convergence_dist_all_strands	0.0
chrom_freq/chrIV/chrIV	83
chrom_freq/chrVII/chrVII	55
chrom_freq/chrXV/chrXV	53
chrom_freq/chrXIII/chrXIII	46
chrom_freq/chrII/chrII	41
chrom_freq/chrXVI/chrXVI	40
chrom_freq/chrXIV/chrXIV	37
chrom_freq/chrX/chrX	37
chrom_freq/chrXII/chrXII	36
chrom_freq/chrXI/chrXI	36
chrom_freq/chrM/chrM	33
chrom_freq/chrVIII/chrVIII	30
chrom_freq/chrIX/chrIX	22
chrom_freq/chrV/chrV	21
chrom_freq/chrIII/chrIII	12
chrom_freq/chrVI/chrVI	8
chrom_freq/chrI/chrI	7
chrom_freq/chrVII/chrXV	6
chrom_freq/chrIV/chrXII	6
chrom_freq/chrIV/chrXIII	6
chrom_freq/chrVII/chrXII	6
chrom_freq/chrII/chrVII	5
chrom_freq/chrXII/chrXIII	5
chrom_freq/chrIV/chrX	5
chrom_freq/chrX/chrXIV	4
chrom_freq/chrII/chrIV	4
chrom_freq/chrII/chrXVI	4
chrom_freq/chrXIV/chrXVI	4
chrom_freq/chrII/chrXIV	4
chrom_freq/chrVII/chrXIV	4
chrom_freq/chrXI/chrXV	4
chrom_freq/chrXI/chrXII	4
chrom_freq/chrIV/chrVII	4
chrom_freq/chrXIII/chrXV	3
chrom_freq/chrXI/chrXVI	3
chrom_freq/chrII/chrXIII	3
chrom_freq/chrXI/chrXIII	3
chrom_freq/chrVII/chrIX	3
chrom_freq/chrVIII/chrXIII	3
chrom_freq/chrX/chrXII	3
chrom_freq/chrX/chrXIII	3
chrom_freq/chrXIII/chrXIV	3
chrom_freq/chrV/chrXVI	3
chrom_freq/chrIV/chrV	3
chrom_freq/chrIV/chrVIII	3
chrom_freq/chrIV/chrXI	3
chrom_freq/chrIV/chrXV	3
chrom_freq/chrIV/chrXVI	3
chrom_freq/chrXV/chrXVI	3
chrom_freq/chrIX/chrXII	3
chrom_freq/chrXIII/chrXVI	2
chrom_freq/chrX/chrXVI	2
chrom_freq/chrIV/chrVI	2
chrom_freq/chrIV/chrXIV	2
chrom_freq/chrXI/chrXIV	2
chrom_freq/chrVII/chrXVI	2
chrom_freq/chrIX/chrX	2
chrom_freq/chrVII/chrVIII	2
chrom_freq/chrIII/chrX	2
chrom_freq/chrIX/chrXV	2
chrom_freq/chrIII/chrV	2
chrom_freq/chrXIV/chrXV	2
chrom_freq/chrXII/chrXV	2
chrom_freq/chrV/chrX	2
chrom_freq/chrI/chrX	2
chrom_freq/chrII/chrXV	2
chrom_freq/chrII/chrVIII	1
chrom_freq/chrXII/chrXIV	1
chrom_freq/chrXII/chrXVI	1
chrom_freq/chrII/chrX	1
chrom_freq/chrI/chrXV	1
chrom_freq/chrIII/chrXIII	1
chrom_freq/chrII/chrXI	1
chrom_freq/chrVI/chrX	1
chrom_freq/chrIII/chrVIII	1
chrom_freq/chrIX/chrXI	1
chrom_freq/chrV/chrM	1
chrom_freq/chrV/chrVI	1
chrom_freq/chrV/chrXI	1
chrom_freq/chrV/chrXIII	1
chrom_freq/chrV/chrXIV	1
chrom_freq/chrV/chrXV	1
chrom_freq/chrVI/chrXI	1
chrom_freq/chrVIII/chrXV	1
chrom_freq/chrVI/chrXII	1
chrom_freq/chrVI/chrXIII	1
chrom_freq/chrVI/chrXIV	1
chrom_freq/chrVI/chrXVI	1
chrom_freq/chrVII/chrXIII	1
chrom_freq/chrVIII/chrIX	1
chrom_freq/chrVIII/chrXI	1
chrom_freq/chrVIII/chrXII	1
chrom_freq/chrVI/chrVII	1
dist_freq/0-1/+-	0
dist_freq/0-1/-+	0
dist_freq/0-1/--	0
dist_freq/0-1/++	0
dist_freq/1-2/+-	0
dist_freq/1-2/-+	0
dist_freq/1-2/--	0
dist_freq/1-2/++	0
dist_freq/2-3/+-	0
dist_freq/2-3/-+	0
dist_freq/2-3/--	0
dist_freq/2-3/++	0
dist_freq/3-4/+-	0
dist_freq/3-4/-+	0
dist_freq/3-4/--	0
dist_freq/3-4/++	0
dist_freq/4-6/+-	0
dist_freq/4-6/-+	1
dist_freq/4-6/--	0
dist_freq/4-6/++	1
dist_freq/6-7/+-	0
dist_freq/6-7/-+	0
dist_freq/6-7/--	0
dist_freq/6-7/++	0
dist_freq/7-10/+-	0
dist_freq/7-10/-+	0
dist_freq/7-10/--	0
dist_freq/7-10/++	0
dist_freq/10-13/+-	0
dist_freq/10-13/-+	0
dist_freq/10-13/--	0
dist_freq/10-13/++	0
dist_freq/13-18/+-	0
dist_freq/13-18/-+	0
dist_freq/13-18/--	0
dist_freq/13-18/++	0
dist_freq/18-24/+-	0
dist_freq/18-24/-+	0
dist_freq/18-24/--	0
dist_freq/18-24/++	0
dist_freq/24-32/+-	0
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dist_freq/24-32/--	0
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dist_freq/32-42/+-	0
dist_freq/32-42/-+	0
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dist_freq/42-56/+-	0
dist_freq/42-56/-+	0
dist_freq/42-56/--	0
dist_freq/42-56/++	0
dist_freq/56-75/+-	0
dist_freq/56-75/-+	0
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dist_freq/75-100/+-	0
dist_freq/75-100/-+	1
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dist_freq/100-133/+-	1
dist_freq/100-133/-+	0
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dist_freq/133-178/+-	6
dist_freq/133-178/-+	2
dist_freq/133-178/--	1
dist_freq/133-178/++	0
dist_freq/178-237/+-	116
dist_freq/178-237/-+	3
dist_freq/178-237/--	0
dist_freq/178-237/++	0
dist_freq/237-316/+-	218
dist_freq/237-316/-+	6
dist_freq/237-316/--	1
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dist_freq/316-422/+-	32
dist_freq/316-422/-+	3
dist_freq/316-422/--	0
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dist_freq/422-562/+-	2
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dist_freq/562-750/+-	1
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dist_freq/562-750/--	0
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dist_freq/750-1000/+-	0
dist_freq/750-1000/-+	8
dist_freq/750-1000/--	0
dist_freq/750-1000/++	1
dist_freq/1000-1334/+-	0
dist_freq/1000-1334/-+	1
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