comparison pangolin.xml @ 5:42a174224817 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pangolin commit 93a8521684d03889f607b8c43db5539d9a0de8d0"

4:42126b414951

<tool id="pangolin" name="Pangolin" version="@TOOL_VERSION@+galaxy0" profile="20.01">
    <description>Phylogenetic Assignment of Outbreak Lineages</description>
    <macros>
        <token name="@TOOL_VERSION@">3.0.3</token>
    </macros>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">pangolin</requirement>
        <requirement type="package" version="0.22.0">csvtk</requirement>
    </requirements>

            <conditional name="db">
                <param name="source" value="download" />
            </conditional>
            <output name="output1" ftype="tabular">
                <assert_contents>
                    <has_text_matching expression="B.1.1.409\t\t*PUSHER" />
                    <has_text text="passed_qc" />
                    <has_n_lines n="1" />
                </assert_contents>
            </output>
        </test>

5:42a174224817

<tool id="pangolin" name="Pangolin" version="@TOOL_VERSION@+galaxy0" profile="20.01">
    <description>Phylogenetic Assignment of Outbreak Lineages</description>
    <macros>
        <token name="@TOOL_VERSION@">3.1.4</token>
    </macros>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">pangolin</requirement>
        <requirement type="package" version="0.22.0">csvtk</requirement>
    </requirements>

            <conditional name="db">
                <param name="source" value="download" />
            </conditional>
            <output name="output1" ftype="tabular">
                <assert_contents>
                    <has_text_matching expression="B.1.1\t0.0\t*PUSHER" />
                    <has_text text="passed_qc" />
                    <has_n_lines n="1" />
                </assert_contents>
            </output>
        </test>