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comparison pangolin.xml @ 7:7bb8726be37c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pangolin commit a5dacfed40bb73aabd9a9a6d1e1076e0e9890a0e"
author iuc
date Tue, 20 Jul 2021 12:23:51 +0000
parents 437e28791761
children 3a656a4a43ed
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6:437e28791761 7:7bb8726be37c
1 <tool id="pangolin" name="Pangolin" version="@TOOL_VERSION@+galaxy1" profile="20.01"> 1 <tool id="pangolin" name="Pangolin" version="@TOOL_VERSION@+galaxy0" profile="20.01">
2 <description>Phylogenetic Assignment of Outbreak Lineages</description> 2 <description>Phylogenetic Assignment of Outbreak Lineages</description>
3 <macros> 3 <macros>
4 <token name="@TOOL_VERSION@">3.1.4</token> 4 <token name="@TOOL_VERSION@">3.1.7</token>
5 </macros> 5 </macros>
6 <requirements> 6 <requirements>
7 <requirement type="package" version="@TOOL_VERSION@">pangolin</requirement> 7 <requirement type="package" version="@TOOL_VERSION@">pangolin</requirement>
8 <requirement type="package" version="0.22.0">csvtk</requirement> 8 <requirement type="package" version="0.23.0">csvtk</requirement>
9 </requirements> 9 </requirements>
10 <command detect_errors="exit_code"><![CDATA[ 10 <command detect_errors="exit_code"><![CDATA[
11 #if str($db.source) == "download" 11 #if str($db.source) == "download"
12 python '$__tool_directory__/fetch_latest_pangolearn.py' --max_retries=$db.max_retries --timeout=$db.timeout && 12 python '$__tool_directory__/fetch_latest_pangolearn.py' --max_retries=$db.max_retries --timeout=$db.timeout &&
13 #else if str($db.source) == "builtin" 13 #else if str($db.source) == "builtin"