Mercurial > repos > iuc > pangolin
comparison pangolin.xml @ 13:debfccc4d65b draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pangolin commit 9e0b7f8095ca73b65255df51444cf0b7e14fff67"
| author | iuc |
|---|---|
| date | Mon, 01 Nov 2021 11:31:16 +0000 |
| parents | 073de3fb84a0 |
| children | 83a69484cb87 |
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| 12:b7e297c2ede6 | 13:debfccc4d65b |
|---|---|
| 1 <tool id="pangolin" name="Pangolin" version="@TOOL_VERSION@+galaxy1" profile="20.01"> | 1 <tool id="pangolin" name="Pangolin" version="@TOOL_VERSION@+galaxy0" profile="20.01"> |
| 2 <description>Phylogenetic Assignment of Outbreak Lineages</description> | 2 <description>Phylogenetic Assignment of Outbreak Lineages</description> |
| 3 <macros> | 3 <macros> |
| 4 <token name="@TOOL_VERSION@">3.1.14</token> | 4 <token name="@TOOL_VERSION@">3.1.16</token> |
| 5 </macros> | 5 </macros> |
| 6 <requirements> | 6 <requirements> |
| 7 <requirement type="package" version="@TOOL_VERSION@">pangolin</requirement> | 7 <requirement type="package" version="@TOOL_VERSION@">pangolin</requirement> |
| 8 <!-- the scorpio requirement is because pangolin got an update to use scorpio 0.3.13 (to detect AY.4.2 better) | |
| 9 while still using the pangolin 3.1.14 code. when pangolin gets updated past 3.1.14 this requirement can | |
| 10 be removed --> | |
| 11 <requirement type="package" version="0.3.13">scorpio</requirement> | |
| 12 <requirement type="package" version="0.23.0">csvtk</requirement> | 8 <requirement type="package" version="0.23.0">csvtk</requirement> |
| 13 </requirements> | 9 </requirements> |
| 14 <command detect_errors="exit_code"><![CDATA[ | 10 <command detect_errors="exit_code"><![CDATA[ |
| 15 #if str($db.source) == "download" | 11 #if str($db.source) == "download" |
| 16 pangolin --update-data --datadir datadir && | 12 pangolin --update-data --datadir datadir && |