diff pangolin.xml @ 29:2f1019071464 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pangolin commit acc495bd77aa3defdda7ec8d8b84a37d6832f2ee

--- a/pangolin.xml	Tue Jul 11 22:32:30 2023 +0000
+++ b/pangolin.xml	Thu Jul 20 05:39:41 2023 +0000
@@ -1,4 +1,4 @@
-<tool id="pangolin" name="Pangolin" version="@TOOL_VERSION@+galaxy0" profile="20.01">
+<tool id="pangolin" name="Pangolin" version="@TOOL_VERSION@+galaxy1" profile="20.01">
     <description>Phylogenetic Assignment of Outbreak Lineages</description>
     <macros>
         <token name="@TOOL_VERSION@">4.3</token>
@@ -12,7 +12,7 @@
         <!-- pangolin-data versions >=1.20 do not contain pangoLEARN models anymore.
         This version of pangolin still supports pangolearn analysis mode, but only when using
         older versions of pangolin-data. -->
-        <token name="@MIN_COMPATIBLE_PANGOLIN_DATA_FORMAT_FOR_PANGOLEARN@">4></token>
+        <token name="@MIN_COMPATIBLE_PANGOLIN_DATA_FORMAT_FOR_PANGOLEARN@">4</token>
         <!-- a regex describing the scorpio versions that this wrapper version
         is backwards-compatible with; can be used with the min_scorpio_version
         column of the pangolin_constellations data table to offer only compatible
@@ -34,11 +34,11 @@
     <requirements>
         <requirement type="package" version="@TOOL_VERSION@">pangolin</requirement>
         <!-- Pin also the versions of all core dependencies - the ones
-        reported with the all-versions option of pangolin plus ucsc-fatovcf,
-        which the command is intended to report but currently cannot for
-        technical reasons - to the versions you'd get installed in an unpinned
-        conda install of pangolin at the time of release of this wrapper
-        version! By turning these dependencies into explicit requirements the
+        reported with the all-versions option of pangolin and which have a
+        direct impact on the lineage assignment process - to the versions
+        you'd get installed in an unpinned conda install of pangolin at the
+        time of release of this wrapper version!
+        By turning these dependencies into explicit requirements the
         requirements section of the tool interface becomes the equivalent of
         the all-versions option as long as the user doesn't update the data
         dependencies.