# HG changeset patch
# User iuc
# Date 1673786101 0
# Node ID 03ed9524dcd1ffe16c8bfd0e82a992268cd46920
# Parent  007ffbb118815e629cfe7c934d46c776c3c4313c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pangolin commit 533e4f638fe88be437066f2acb7aa2de710b8e2f

diff -r 007ffbb11881 -r 03ed9524dcd1 pangolin.xml
--- a/pangolin.xml	Sun Jan 15 10:34:09 2023 +0000
+++ b/pangolin.xml	Sun Jan 15 12:35:01 2023 +0000
@@ -1,7 +1,7 @@
 <tool id="pangolin" name="Pangolin" version="@TOOL_VERSION@+galaxy0" profile="20.01">
     <description>Phylogenetic Assignment of Outbreak Lineages</description>
     <macros>
-        <token name="@TOOL_VERSION@">4.1.3</token>
+        <token name="@TOOL_VERSION@">4.2</token>
         <token name="@PANGOLIN_DATA_VERSION@">1.17</token>
         <token name="@CONSTELLATIONS_VERSION@">0.1.10</token>
         <token name="@MIN_COMPATIBLE_PANGOLIN_DATA_FORMAT@">4</token>
@@ -196,7 +196,7 @@
         <param type="data" name="input1" format="fasta,fasta.gz" label="Input FASTA File(s)" />
         <conditional name="engine">
             <param argument="--analysis-mode" type="select" label="Analysis mode"
-            help="The analysis engine to use for lineage assignment. UShER is considered more accurate; pangoLEARN typically requires more memory, but might be faster in some cases.">
+            help="The analysis engine to use for lineage assignment. Note: In this version, UShER mode is implemented through the usher-sampled algorithm of UShER. If you prefer to run the original usher algorithm, please use version 4.1.3 of the tool.">
                 <option value="usher">UShER</option>
                 <option value="pangolearn">pangoLEARN</option>
             </param>