Mercurial > repos > iuc > pangolin
changeset 29:2f1019071464 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pangolin commit acc495bd77aa3defdda7ec8d8b84a37d6832f2ee
| author | iuc |
|---|---|
| date | Thu, 20 Jul 2023 05:39:41 +0000 |
| parents | 9d61d3fa046c |
| children | 8ad84c5753ea |
| files | pangolin.xml |
| diffstat | 1 files changed, 7 insertions(+), 7 deletions(-) [+] |
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--- a/pangolin.xml Tue Jul 11 22:32:30 2023 +0000 +++ b/pangolin.xml Thu Jul 20 05:39:41 2023 +0000 @@ -1,4 +1,4 @@ -<tool id="pangolin" name="Pangolin" version="@TOOL_VERSION@+galaxy0" profile="20.01"> +<tool id="pangolin" name="Pangolin" version="@TOOL_VERSION@+galaxy1" profile="20.01"> <description>Phylogenetic Assignment of Outbreak Lineages</description> <macros> <token name="@TOOL_VERSION@">4.3</token> @@ -12,7 +12,7 @@ <!-- pangolin-data versions >=1.20 do not contain pangoLEARN models anymore. This version of pangolin still supports pangolearn analysis mode, but only when using older versions of pangolin-data. --> - <token name="@MIN_COMPATIBLE_PANGOLIN_DATA_FORMAT_FOR_PANGOLEARN@">4></token> + <token name="@MIN_COMPATIBLE_PANGOLIN_DATA_FORMAT_FOR_PANGOLEARN@">4</token> <!-- a regex describing the scorpio versions that this wrapper version is backwards-compatible with; can be used with the min_scorpio_version column of the pangolin_constellations data table to offer only compatible @@ -34,11 +34,11 @@ <requirements> <requirement type="package" version="@TOOL_VERSION@">pangolin</requirement> <!-- Pin also the versions of all core dependencies - the ones - reported with the all-versions option of pangolin plus ucsc-fatovcf, - which the command is intended to report but currently cannot for - technical reasons - to the versions you'd get installed in an unpinned - conda install of pangolin at the time of release of this wrapper - version! By turning these dependencies into explicit requirements the + reported with the all-versions option of pangolin and which have a + direct impact on the lineage assignment process - to the versions + you'd get installed in an unpinned conda install of pangolin at the + time of release of this wrapper version! + By turning these dependencies into explicit requirements the requirements section of the tool interface becomes the equivalent of the all-versions option as long as the user doesn't update the data dependencies.