Mercurial > repos > iuc > pcdl_make_cell_vtk
comparison README.txt @ 0:8e422141680e draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/pcdl/ commit 7c74921b41bd7ab639e5a3f8b54e407f79ed8f16
| author | iuc |
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| date | Mon, 04 Aug 2025 18:55:36 +0000 |
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| -1:000000000000 | 0:8e422141680e |
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| 1 pcdl | |
| 2 ==== | |
| 3 | |
| 4 Galaxy wrapper for the pcdl PhysiCell Data Loader command line commands. | |
| 5 Pcdl is paramount for downstream analysis from PhysiCell output. | |
| 6 As such, the pcdl Galaxy tools are useful if you work with the interactive | |
| 7 PhysiCell Studio Galaxy tool. | |
| 8 + https://usegalaxy.eu/?tool_id=interactive_tool_pcstudio&version=latest | |
| 9 | |
| 10 You will have to unzip the PhysiCell output folder before you can run | |
| 11 pcdl Galaxy tools on it. | |
| 12 + https://usegalaxy.eu/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fimgteam%2Funzip%2Funzip%2F6.0%2Bgalaxy0&version=latest | |
| 13 + https://usegalaxy.org/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Frheiland%2Fphysicell_studio%2Finteractive_tool_pcstudio%2F0.3&version=latest | |
| 14 | |
| 15 More information about PhysiCell, PhysiCell Studio, and PhysiCell Data Loader | |
| 16 can be found here: | |
| 17 + https://physicell.org/index.html | |
| 18 + https://physicell-studio.readthedocs.io/en/latest/index.html | |
| 19 + https://github.com/elmbeech/physicelldataloader | |
| 20 | |
| 21 Date: 2025-06-06 | |
| 22 License: BSD-3-Clause | |
| 23 Author: Elmar Bucher |