Mercurial > repos > iuc > pe_histogram
changeset 3:bd1416eea1f0 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pe_histogram commit 4731e16b619f4ea176b6f68e34b8f9f9ac1a776c"
| author | iuc |
|---|---|
| date | Wed, 04 Dec 2019 08:18:34 -0500 |
| parents | 9be99db0304a |
| children | 594b85e4237a |
| files | pe_histogram.xml test-data/output1.png test-data/output2.png |
| diffstat | 3 files changed, 4 insertions(+), 3 deletions(-) [+] |
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--- a/pe_histogram.xml Tue Jul 11 14:36:59 2017 -0400 +++ b/pe_histogram.xml Wed Dec 04 08:18:34 2019 -0500 @@ -1,7 +1,8 @@ <tool id="pe_histogram" name="Paired-end histogram" version="1.0.1"> <description>of insert size frequency</description> <requirements> - <requirement type="package" version="8.0.112">openjdk</requirement> + <requirement type="package" version="11.0.1">openjdk</requirement> + <requirement type="package" version="1">fonts-conda-ecosystem</requirement> </requirements> <command detect_errors="aggressive"><![CDATA[ ln -s '${input_bam}' localbam.bam && @@ -21,8 +22,8 @@ ]]></command> <inputs> <param name="input_bam" type="data" format="bam" label="BAM file" /> - <param name="lower_limit" type="integer" value="" optional="True" min="0" label="Lower bp limit (optional)" help="The lower bp limit on insert size for calculating the histogram."/> - <param name="upper_limit" type="integer" value="" optional="True" min="0" label="Upper bp limit (optional)" help="The upper bp limit on insert size for calculating the histogram." /> + <param name="lower_limit" type="integer" value="" optional="true" min="0" label="Lower bp limit (optional)" help="The lower bp limit on insert size for calculating the histogram."/> + <param name="upper_limit" type="integer" value="" optional="true" min="0" label="Upper bp limit (optional)" help="The upper bp limit on insert size for calculating the histogram." /> </inputs> <outputs> <data name="output1" format="png" />