diff peakzilla.xml @ 1:8badcbe5792c draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/peakzilla commit ce081671d5ad816158825b089a0e62682f5f7963

--- a/peakzilla.xml	Mon Feb 26 10:55:19 2024 +0000
+++ b/peakzilla.xml	Tue Feb 27 10:34:27 2024 +0000
@@ -2,7 +2,7 @@
     <description>Identify transcription factor binding sites from ChIP-seq and ChIP-exo experiments</description>
     <macros>
         <token name="@TOOL_VERSION@">1.0</token>
-        <token name="@VERSION_SUFFIX@">0</token>
+        <token name="@VERSION_SUFFIX@">1</token>
     </macros>
     <requirements>
         <requirement type="package" version="2.7">python</requirement>
@@ -63,13 +63,22 @@
     <outputs>
         <data name="results" format="tabular" label="${tool.name} on ${on_string}"/>
         <data name="log" format="txt" from_work_dir="log.txt" label="Log file for ${tool.name} on ${on_string}">
-            <filter>log</filter>
+            <filter>outputs["log"]</filter>
         </data>
         <data name="negative_peaks" format="tabular" from_work_dir="negative_peaks.tsv" label="Negative peaks for ${tool.name} on ${on_string}">
-            <filter>negative</filter>
+            <filter>outputs["negative"]</filter>
         </data>
     </outputs>
     <tests>
+        <test expect_num_outputs="1">
+            <param name="chip_bed" value="chip.bed" />
+            <param name="input_bed" value="input.bed" />
+            <output name="results" file="results_1.tsv">
+                <assert_contents>
+                    <has_text text="Peak_1" />
+                </assert_contents>
+            </output>
+        </test>
         <test expect_num_outputs="3">
             <param name="chip_bed" value="chip.bed" />
             <param name="input_bed" value="input.bed" />
@@ -79,7 +88,7 @@
             <param name="score_cutoff" value="1" />
             <param name="log" value="true" />
             <param name="negative" value="true" />
-            <output name="results" file="results.tsv">
+            <output name="results" file="results_2.tsv">
                 <assert_contents>
                     <has_text text="Peak_1" />
                 </assert_contents>