# HG changeset patch # User iuc # Date 1754385638 0 # Node ID f41d29b1a43e0727c7c140219d73e447d6bf514f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/pimento commit 69888afa40f5ac6a42fa9335cf61f0bb6387eb2f diff -r 000000000000 -r f41d29b1a43e auto.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/auto.xml Tue Aug 05 09:20:38 2025 +0000 @@ -0,0 +1,44 @@ + + Infers primers by predicting optimal cutoff points from read conservation patterns + + macros.xml + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff -r 000000000000 -r f41d29b1a43e macros.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Tue Aug 05 09:20:38 2025 +0000 @@ -0,0 +1,20 @@ + + 1.0.2 + 0 + Apache-2.0 + + + mi-pimento + + + + + + + + + + 10.1101/2025.07.04.663168 + + + diff -r 000000000000 -r f41d29b1a43e test-data/test.fastq.gz Binary file test-data/test.fastq.gz has changed diff -r 000000000000 -r f41d29b1a43e test-data/test_bcv.tsv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_bcv.tsv Tue Aug 05 09:20:38 2025 +0000 @@ -0,0 +1,3 @@ + 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 +F 0.952 0.9583999999999999 0.96 0.8464 0.8552 0.8343999999999999 0.8112 0.7272 0.828 0.8071999999999999 0.8039999999999999 0.8055999999999999 0.8736 0.8343999999999999 0.8432000000000001 0.8231999999999999 0.8200000000000001 0.836 0.8720000000000001 0.876 0.8168 0.8352 0.8216000000000001 +R 0.9544 0.8472 0.7263999999999999 0.7295999999999999 0.7287999999999999 0.7248 0.8256 0.9408 0.9336 0.9352 0.9328000000000001 0.9359999999999999 0.9368000000000001 0.9384 0.9399999999999998 0.9416 0.8888 0.8880000000000001 0.8928 0.8943999999999999 0.8768 0.9256 0.9199999999999999 diff -r 000000000000 -r f41d29b1a43e test-data/test_cutoffs.tsv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_cutoffs.tsv Tue Aug 05 09:20:38 2025 +0000 @@ -0,0 +1,3 @@ +strand inf_point +F 14 +R 17