annotate tool-data/all_fasta.loc.sample @ 1:91ef4a171202 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit 0ad49d906b38e290b860310e73b1f8585ac65d09
author iuc
date Tue, 03 Oct 2017 18:04:46 -0400
parents f7556cfa4047
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91ef4a171202 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit 0ad49d906b38e290b860310e73b1f8585ac65d09
iuc
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1 #This file lists the locations and dbkeys of all the genome and transcriptome fasta files
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f7556cfa4047 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit a9f602d697c570bc40c6b6ab8e873a11e0eb703d
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2 #under the "genome" directory (a directory that contains a directory
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91ef4a171202 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit 0ad49d906b38e290b860310e73b1f8585ac65d09
iuc
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3 #for each build. This file has the format (white space characters are
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f7556cfa4047 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit a9f602d697c570bc40c6b6ab8e873a11e0eb703d
iuc
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4 #TAB characters):
f7556cfa4047 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit a9f602d697c570bc40c6b6ab8e873a11e0eb703d
iuc
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5 #
f7556cfa4047 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit a9f602d697c570bc40c6b6ab8e873a11e0eb703d
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6 #<unique_build_id> <dbkey> <display_name> <file_path>
f7556cfa4047 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit a9f602d697c570bc40c6b6ab8e873a11e0eb703d
iuc
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7 #
f7556cfa4047 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit a9f602d697c570bc40c6b6ab8e873a11e0eb703d
iuc
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8 #So, all_fasta.loc could look something like this:
f7556cfa4047 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit a9f602d697c570bc40c6b6ab8e873a11e0eb703d
iuc
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9 #
f7556cfa4047 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit a9f602d697c570bc40c6b6ab8e873a11e0eb703d
iuc
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10 #apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa
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91ef4a171202 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit 0ad49d906b38e290b860310e73b1f8585ac65d09
iuc
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11 #hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa
91ef4a171202 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit 0ad49d906b38e290b860310e73b1f8585ac65d09
iuc
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12 #hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa
91ef4a171202 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit 0ad49d906b38e290b860310e73b1f8585ac65d09
iuc
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13 #hg19full.87 hg19 Human (Homo sapiens): hg19 Full Trans v87 /path/to/genome/hg19/hg19full.cdna.all.fa
91ef4a171202 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit 0ad49d906b38e290b860310e73b1f8585ac65d09
iuc
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f7556cfa4047 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit a9f602d697c570bc40c6b6ab8e873a11e0eb703d
iuc
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15 #Your all_fasta.loc file should contain an entry for each individual
f7556cfa4047 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit a9f602d697c570bc40c6b6ab8e873a11e0eb703d
iuc
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16 #fasta file. So there will be multiple fasta files for each build,
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91ef4a171202 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit 0ad49d906b38e290b860310e73b1f8585ac65d09
iuc
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17 #such as with hg19 above.
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f7556cfa4047 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit a9f602d697c570bc40c6b6ab8e873a11e0eb703d
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18 #