diff test-data/out.fusions.tab @ 0:f7556cfa4047 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit a9f602d697c570bc40c6b6ab8e873a11e0eb703d

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/out.fusions.tab	Wed Sep 13 22:40:57 2017 -0400
@@ -0,0 +1,10 @@
+geneA.name	geneA.id	geneB.name	geneB.id	paircount	splitcount	transcripts.list
+CD74	ENSG00000019582.14	ROS1	ENSG00000047936.10	1	21	ENST00000009530.11_0:627_ENST00000368507.7_5738:7417;ENST00000353334.10_0:805_ENST00000368507.7_5738:7417;ENST00000009530.11_0:627_ENST00000368508.7_5756:7435;ENST00000353334.10_0:805_ENST00000368508.7_5756:7435;ENST00000518797.5_0:608_ENST00000368507.7_5738:7417;ENST00000518797.5_0:608_ENST00000368508.7_5756:7435
+EML4	ENSG00000143924.18	ALK	ENSG00000171094.15	4	0	ENST00000401738.3_0:1825_ENST00000618119.4_2508:4646;ENST00000402711.6_0:1726_ENST00000618119.4_2508:4646;ENST00000318522.9_0:1903_ENST00000618119.4_2508:4646;ENST00000401738.3_0:1825_ENST00000389048.7_4079:6220;ENST00000318522.9_0:1903_ENST00000431873.5_52:2190;ENST00000402711.6_0:1726_ENST00000431873.5_52:2190;ENST00000402711.6_0:1726_ENST00000389048.7_4079:6220;ENST00000401738.3_0:1825_ENST00000431873.5_52:2190;ENST00000318522.9_0:1903_ENST00000389048.7_4079:6220
+HOOK3	ENSG00000168172.8	RET	ENSG00000165731.17	3	26	ENST00000307602.8_0:1322_ENST00000355710.7_2368:5659;ENST00000307602.8_0:1322_ENST00000340058.5_2316:4149
+ETV6	ENSG00000139083.10	NTRK3	ENSG00000140538.16	15	33	ENST00000396373.8_0:1283_ENST00000355254.6_1867:2938;ENST00000396373.8_0:1283_ENST00000357724.6_1867:2980;ENST00000396373.8_0:1283_ENST00000558676.5_1587:4670;ENST00000396373.8_0:1283_ENST00000360948.6_1891:3004;ENST00000396373.8_0:1283_ENST00000542733.6_1451:2287;ENST00000396373.8_0:1283_ENST00000557856.5_1585:2622;ENST00000396373.8_0:1283_ENST00000626019.2_1585:2741;ENST00000396373.8_0:1283_ENST00000629765.2_1601:2714;ENST00000396373.8_0:1283_ENST00000394480.6_1907:19984
+AKAP9	ENSG00000127914.16	BRAF	ENSG00000157764.12	19	24	ENST00000356239.7_0:3551_ENST00000288602.10_1201:2480;ENST00000358100.6_0:3318_ENST00000288602.10_1201:2480;ENST00000359028.6_0:3351_ENST00000288602.10_1201:2480;ENST00000619023.4_0:3526_ENST00000288602.10_1201:2480
+TMPRSS2	ENSG00000184012.11	ETV1	ENSG00000006468.13	9	19	ENST00000398585.7_0:410_ENST00000242066.9_646:6348;ENST00000458356.5_0:327_ENST00000242066.9_646:6348;ENST00000332149.9_0:373_ENST00000242066.9_646:6348;ENST00000398585.7_0:410_ENST00000420159.6_529:6231;ENST00000455813.1_0:454_ENST00000420159.6_529:6231;ENST00000398585.7_0:410_ENST00000405358.8_514:4181;ENST00000455813.1_0:454_ENST00000405358.8_514:4181;ENST00000424093.5_0:306_ENST00000403527.5_583:3363;ENST00000424093.5_0:306_ENST00000405358.8_514:4181;ENST00000458356.5_0:327_ENST00000403527.5_583:3363;ENST00000398585.7_0:410_ENST00000405192.6_566:4402;ENST00000454499.5_0:672_ENST00000242066.9_646:6348;ENST00000455813.1_0:454_ENST00000405192.6_566:4402;ENST00000455813.1_0:454_ENST00000438956.5_467:1141;ENST00000398585.7_0:410_ENST00000403685.5_526:1603;ENST00000454499.5_0:672_ENST00000403527.5_583:3363;ENST00000424093.5_0:306_ENST00000242066.9_646:6348;ENST00000332149.9_0:373_ENST00000405218.6_837:3391;ENST00000454499.5_0:672_ENST00000405358.8_514:4181;ENST00000458356.5_0:327_ENST00000403685.5_526:1603;ENST00000332149.9_0:373_ENST00000430479.5_1033:6740;ENST00000332149.9_0:373_ENST00000405358.8_514:4181;ENST00000454499.5_0:672_ENST00000405192.6_566:4402;ENST00000455813.1_0:454_ENST00000430479.5_1033:6740;ENST00000455813.1_0:454_ENST00000242066.9_646:6348;ENST00000454499.5_0:672_ENST00000430479.5_1033:6740;ENST00000398585.7_0:410_ENST00000405218.6_837:3391;ENST00000332149.9_0:373_ENST00000403527.5_583:3363;ENST00000424093.5_0:306_ENST00000405192.6_566:4402;ENST00000424093.5_0:306_ENST00000405218.6_837:3391;ENST00000332149.9_0:373_ENST00000405192.6_566:4402;ENST00000454499.5_0:672_ENST00000420159.6_529:6231;ENST00000458356.5_0:327_ENST00000405192.6_566:4402;ENST00000455813.1_0:454_ENST00000403527.5_583:3363;ENST00000424093.5_0:306_ENST00000420159.6_529:6231;ENST00000398585.7_0:410_ENST00000403527.5_583:3363;ENST00000458356.5_0:327_ENST00000405218.6_837:3391;ENST00000458356.5_0:327_ENST00000430479.5_1033:6740;ENST00000454499.5_0:672_ENST00000405218.6_837:3391;ENST00000458356.5_0:327_ENST00000405358.8_514:4181;ENST00000455813.1_0:454_ENST00000405218.6_837:3391;ENST00000332149.9_0:373_ENST00000403685.5_526:1603;ENST00000454499.5_0:672_ENST00000403685.5_526:1603;ENST00000424093.5_0:306_ENST00000403685.5_526:1603;ENST00000455813.1_0:454_ENST00000403685.5_526:1603;ENST00000398585.7_0:410_ENST00000430479.5_1033:6740;ENST00000332149.9_0:373_ENST00000438956.5_467:1141;ENST00000458356.5_0:327_ENST00000438956.5_467:1141;ENST00000454499.5_0:672_ENST00000438956.5_467:1141;ENST00000424093.5_0:306_ENST00000438956.5_467:1141;ENST00000398585.7_0:410_ENST00000438956.5_467:1141;ENST00000332149.9_0:373_ENST00000420159.6_529:6231;ENST00000424093.5_0:306_ENST00000430479.5_1033:6740;ENST00000458356.5_0:327_ENST00000420159.6_529:6231
+EWSR1	ENSG00000182944.17	ATF1	ENSG00000123268.8	3	38	ENST00000333395.10_0:812_ENST00000552487.1_656:745;ENST00000406548.5_0:857_ENST00000262053.7_533:2181;ENST00000455726.5_0:636_ENST00000262053.7_533:2181;ENST00000332035.10_0:636_ENST00000262053.7_533:2181;ENST00000333395.10_0:812_ENST00000262053.7_533:2181;ENST00000437155.6_0:851_ENST00000552487.1_656:745;ENST00000629659.2_0:1124_ENST00000552487.1_656:745;ENST00000331029.11_0:839_ENST00000552487.1_656:745;ENST00000397938.6_0:1112_ENST00000552487.1_656:745;ENST00000455726.5_0:636_ENST00000552487.1_656:745;ENST00000332035.10_0:636_ENST00000552487.1_656:745;ENST00000332050.10_0:1121_ENST00000552487.1_656:745;ENST00000406548.5_0:857_ENST00000552487.1_656:745;ENST00000332050.10_0:1121_ENST00000262053.7_533:2181;ENST00000414183.6_0:832_ENST00000262053.7_533:2181;ENST00000397938.6_0:1112_ENST00000262053.7_533:2181;ENST00000437155.6_0:851_ENST00000262053.7_533:2181;ENST00000414183.6_0:832_ENST00000552487.1_656:745;ENST00000331029.11_0:839_ENST00000262053.7_533:2181;ENST00000629659.2_0:1124_ENST00000262053.7_533:2181
+BRD4	ENSG00000141867.17	NUTM1	ENSG00000184507.15	11	39	ENST00000371835.8_0:2380_ENST00000333756.4_171:3795;ENST00000263377.6_0:2380_ENST00000333756.4_171:3795;ENST00000371835.8_0:2380_ENST00000537011.5_482:4102;ENST00000263377.6_0:2380_ENST00000537011.5_482:4102;ENST00000360016.9_0:2448_ENST00000333756.4_171:3795;ENST00000371835.8_0:2380_ENST00000614490.4_567:4196;ENST00000263377.6_0:2380_ENST00000614490.4_567:4196;ENST00000360016.9_0:2448_ENST00000614490.4_567:4196;ENST00000360016.9_0:2448_ENST00000438749.7_293:3922;ENST00000360016.9_0:2448_ENST00000537011.5_482:4102
+EWSR1	ENSG00000182944.17	FLI1	ENSG00000151702.16	11	32	ENST00000333395.10_0:812_ENST00000527786.6_1210:4127;ENST00000332035.10_0:636_ENST00000344954.10_511:3427;ENST00000455726.5_0:636_ENST00000344954.10_511:3427;ENST00000397938.6_0:1112_ENST00000344954.10_511:3427;ENST00000332035.10_0:636_ENST00000281428.12_1235:4151;ENST00000455726.5_0:636_ENST00000281428.12_1235:4151;ENST00000331029.11_0:839_ENST00000527786.6_1210:4127;ENST00000397938.6_0:1112_ENST00000534087.3_942:3859;ENST00000333395.10_0:812_ENST00000534087.3_942:3859;ENST00000414183.6_0:832_ENST00000527786.6_1210:4127;ENST00000331029.11_0:839_ENST00000281428.12_1235:4151;ENST00000406548.5_0:857_ENST00000344954.10_511:3427;ENST00000437155.6_0:851_ENST00000281428.12_1235:4151;ENST00000437155.6_0:851_ENST00000527786.6_1210:4127;ENST00000406548.5_0:857_ENST00000527786.6_1210:4127;ENST00000331029.11_0:839_ENST00000534087.3_942:3859;ENST00000414183.6_0:832_ENST00000344954.10_511:3427;ENST00000397938.6_0:1112_ENST00000281428.12_1235:4151;ENST00000437155.6_0:851_ENST00000344954.10_511:3427;ENST00000333395.10_0:812_ENST00000281428.12_1235:4151;ENST00000406548.5_0:857_ENST00000534087.3_942:3859;ENST00000414183.6_0:832_ENST00000281428.12_1235:4151;ENST00000455726.5_0:636_ENST00000534087.3_942:3859;ENST00000332035.10_0:636_ENST00000534087.3_942:3859;ENST00000437155.6_0:851_ENST00000534087.3_942:3859;ENST00000333395.10_0:812_ENST00000344954.10_511:3427;ENST00000414183.6_0:832_ENST00000534087.3_942:3859;ENST00000406548.5_0:857_ENST00000281428.12_1235:4151;ENST00000331029.11_0:839_ENST00000344954.10_511:3427;ENST00000397938.6_0:1112_ENST00000527786.6_1210:4127;ENST00000455726.5_0:636_ENST00000527786.6_1210:4127;ENST00000332035.10_0:636_ENST00000527786.6_1210:4127