Mercurial > repos > iuc > plink
comparison plink.xml @ 2:0d43871f45ac draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/plink commit 3ba5c41a39870355d1ba5dfc10a49e84d6135981"
author | iuc |
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date | Wed, 23 Sep 2020 19:09:13 +0000 |
parents | b8e3d957c0f5 |
children | 57ac42ec1be3 |
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1:b8e3d957c0f5 | 2:0d43871f45ac |
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387 <param name='filetype' type='select' label='Main input data type'> | 387 <param name='filetype' type='select' label='Main input data type'> |
388 <option value='bfile'>plink file</option> | 388 <option value='bfile'>plink file</option> |
389 <option value='vcf'>VCF input file</option> | 389 <option value='vcf'>VCF input file</option> |
390 </param> | 390 </param> |
391 <when value='bfile'> | 391 <when value='bfile'> |
392 <param format='binary' name='bed' type='data' label='plink bed file'/> | 392 <param format='pbed' name='bed' type='data' label='plink bed file'/> |
393 <param format='tabular,tsv' name='bim' type='data' label='plink bim file'/> | 393 <param format='tabular,tsv' name='bim' type='data' label='plink bim file'/> |
394 <param format='txt' name='fam' type='data' label='plink fam file'/> | 394 <param format='txt' name='fam' type='data' label='plink fam file'/> |
395 </when> | 395 </when> |
396 <when value='vcf'> | 396 <when value='vcf'> |
397 <param name='input' format='vcf,bcf' type='data' label='VCF/BCF Input file'/> | 397 <param name='input' format='vcf,bcf' type='data' label='VCF/BCF Input file'/> |
958 </conditional> | 958 </conditional> |
959 </inputs> | 959 </inputs> |
960 <outputs> | 960 <outputs> |
961 <!--Main--> | 961 <!--Main--> |
962 <collection name='plink_out' type='list' label='Plink main outputs'> | 962 <collection name='plink_out' type='list' label='Plink main outputs'> |
963 <data name='plink_bed' format='binary' from_work_dir='plink_output/plink_output.bed'/> | 963 <data name='plink_bed' format='pbed' from_work_dir='plink_output/plink_output.bed'/> |
964 <data name='plink_bim' format='tabular' from_work_dir='plink_output/plink_output.bim'/> | 964 <data name='plink_bim' format='tabular' from_work_dir='plink_output/plink_output.bim'/> |
965 <data name='plink_fam' format='tabular' from_work_dir='plink_output/plink_output.fam'/> | 965 <data name='plink_fam' format='txt' from_work_dir='plink_output/plink_output.fam'/> |
966 <data name='plink_log' format='txt' from_work_dir='plink_output/plink_output.log'/> | 966 <data name='plink_log' format='txt' from_work_dir='plink_output/plink_output.log'/> |
967 </collection> | 967 </collection> |
968 | 968 |
969 <!--Data Manage--> | 969 <!--Data Manage--> |
970 <data name='plink_ped' format='txt' from_work_dir='plink_output/plink_output.ped' label='${tool.name}: Recode ped'> | 970 <data name='plink_ped' format='txt' from_work_dir='plink_output/plink_output.ped' label='${tool.name}: Recode ped'> |