diff test-data/out.hardy @ 0:a98caf1d69ab draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/plink commit 555a851b363c015f26d6fcf1f52bcbf3420a0b3b"
author iuc
date Mon, 21 Sep 2020 10:09:22 +0000
parents
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/out.hardy	Mon Sep 21 10:09:22 2020 +0000
@@ -0,0 +1,151 @@
+ CHR     SNP     TEST   A1   A2                 GENO   O(HET)   E(HET)            P 
+   1    snp0      ALL    A    B            42/104/54     0.52   0.4982       0.5729
+   1    snp0      AFF    A    B             21/55/25   0.5446   0.4992       0.4284
+   1    snp0    UNAFF    A    B             21/49/29   0.4949   0.4967            1
+   1    snp1      ALL    A    B             49/97/54    0.485   0.4997       0.6729
+   1    snp1      AFF    A    B             19/51/31    0.505   0.4929            1
+   1    snp1    UNAFF    A    B             30/46/23   0.4646   0.4975       0.5457
+   1    snp2      ALL    A    B            47/101/52    0.505   0.4997            1
+   1    snp2      AFF    A    B             21/51/29    0.505   0.4969            1
+   1    snp2    UNAFF    A    B             26/50/23   0.5051   0.4995            1
+   1    snp3      ALL    B    A            48/100/52      0.5   0.4998            1
+   1    snp3      AFF    B    A             22/56/23   0.5545      0.5       0.3238
+   1    snp3    UNAFF    B    A             26/44/29   0.4444   0.4995       0.3141
+   1    snp4      ALL    B    A             53/93/54    0.465      0.5       0.3243
+   1    snp4      AFF    B    A             28/43/30   0.4257   0.4998       0.1627
+   1    snp4    UNAFF    B    A             25/50/24   0.5051   0.4999            1
+   1    snp5      ALL    B    A            42/108/50     0.54   0.4992       0.3209
+   1    snp5      AFF    B    A             26/53/22   0.5248   0.4992       0.6923
+   1    snp5    UNAFF    B    A             16/55/28   0.5556   0.4927       0.3064
+   1    snp6      ALL    A    B            48/104/48     0.52      0.5       0.6713
+   1    snp6      AFF    A    B             26/49/26   0.4851      0.5       0.8422
+   1    snp6    UNAFF    A    B             22/55/22   0.5556      0.5       0.3192
+   1    snp7      ALL    A    B            42/114/44     0.57      0.5      0.06552
+   1    snp7      AFF    A    B             23/56/22   0.5545      0.5       0.3238
+   1    snp7    UNAFF    A    B             19/58/22   0.5859   0.4995       0.1097
+   1    snp8      ALL    B    A             49/95/56    0.475   0.4994       0.4818
+   1    snp8      AFF    B    A             26/50/25    0.495      0.5            1
+   1    snp8    UNAFF    B    A             23/45/31   0.4545   0.4967       0.4204
+   1    snp9      ALL    A    B            39/106/55     0.53   0.4968       0.3944
+   1    snp9      AFF    A    B             24/49/28   0.4851   0.4992       0.8421
+   1    snp9    UNAFF    A    B             15/57/27   0.5758   0.4927       0.1518
+   1   snp10      ALL    B    A            41/109/50    0.545    0.499       0.2563
+   1   snp10      AFF    B    A             21/54/26   0.5347   0.4988       0.5519
+   1   snp10    UNAFF    B    A             20/55/24   0.5556   0.4992       0.3173
+   1   snp11      ALL    B    A            44/101/55    0.505   0.4985       0.8881
+   1   snp11      AFF    B    A             20/53/28   0.5248   0.4969       0.6894
+   1   snp11    UNAFF    B    A             24/48/27   0.4848   0.4995       0.8406
+   1   snp12      ALL    B    A            40/109/51    0.545   0.4985       0.2051
+   1   snp12      AFF    B    A             22/57/22   0.5644      0.5       0.2364
+   1   snp12    UNAFF    B    A             18/52/29   0.5253   0.4938       0.6836
+   1   snp13      ALL    A    B             50/99/51    0.495      0.5       0.8881
+   1   snp13      AFF    A    B             20/49/32   0.4851   0.4929       0.8426
+   1   snp13    UNAFF    A    B             30/50/19   0.5051   0.4938            1
+   1   snp14      ALL    B    A             49/98/53     0.49   0.4998       0.7784
+   1   snp14      AFF    B    A             24/48/29   0.4752   0.4988       0.6902
+   1   snp14    UNAFF    B    A             25/50/24   0.5051   0.4999            1
+   1   snp15      ALL    A    B            41/107/52    0.535   0.4985       0.3245
+   1   snp15      AFF    A    B             24/55/22   0.5446   0.4998       0.4297
+   1   snp15    UNAFF    A    B             17/52/30   0.5253   0.4914       0.5456
+   1   snp16      ALL    A    B            44/100/56      0.5   0.4982            1
+   1   snp16      AFF    A    B             21/51/29    0.505   0.4969            1
+   1   snp16    UNAFF    A    B             23/49/27   0.4949   0.4992            1
+   1   snp39      ALL    B    A            36/113/51    0.565   0.4972      0.06513
+   1   snp39      AFF    B    A             18/52/31   0.5149   0.4917       0.6903
+   1   snp39    UNAFF    B    A             18/61/20   0.6162   0.4998      0.02774
+   1   snp40      ALL    B    A             53/91/56    0.455   0.4999        0.205
+   1   snp40      AFF    B    A             30/46/25   0.4554   0.4988       0.4251
+   1   snp40    UNAFF    B    A             23/45/31   0.4545   0.4967       0.4204
+   1   snp41      ALL    B    A            44/105/51    0.525   0.4994       0.5708
+   1   snp41      AFF    B    A             19/55/27   0.5446   0.4969       0.4239
+   1   snp41    UNAFF    B    A             25/50/24   0.5051   0.4999            1
+   1   snp42      ALL    B    A             51/97/52    0.485      0.5       0.6728
+   1   snp42      AFF    B    A             27/43/31   0.4257   0.4992       0.1625
+   1   snp42    UNAFF    B    A             24/54/21   0.5455   0.4995       0.4246
+   1   snp44      ALL    A    B            44/108/48     0.54   0.4998       0.3216
+   1   snp44      AFF    A    B             19/54/28   0.5347    0.496       0.5475
+   1   snp44    UNAFF    A    B             25/54/20   0.5455   0.4987       0.4229
+   1   snp46      ALL    A    B            45/105/50    0.525   0.4997       0.5711
+   1   snp46      AFF    A    B             17/54/30   0.5347   0.4917       0.4253
+   1   snp46    UNAFF    A    B             28/51/20   0.5152   0.4967         0.84
+   1   snp48      ALL    B    A             50/96/54     0.48   0.4998       0.5735
+   1   snp48      AFF    B    A             32/41/28   0.4059   0.4992      0.07221
+   1   snp48    UNAFF    B    A             18/55/26   0.5556   0.4967       0.3123
+  23   snp17      ALL    B    A            43/105/52    0.525    0.499       0.5705
+  23   snp17      AFF    B    A             23/51/27    0.505   0.4992            1
+  23   snp17    UNAFF    B    A             20/54/25   0.5455   0.4987       0.4229
+  23   snp18      ALL    B    A            46/101/53    0.505   0.4994            1
+  23   snp18      AFF    B    A             23/53/25   0.5248   0.4998       0.6931
+  23   snp18    UNAFF    B    A             23/48/28   0.4848   0.4987       0.8405
+  23   snp19      ALL    A    B            48/101/51    0.505   0.4999            1
+  23   snp19      AFF    A    B             24/49/28   0.4851   0.4992       0.8421
+  23   snp19    UNAFF    A    B             24/52/23   0.5253   0.4999       0.6904
+  23   snp20      ALL    A    B             52/92/56     0.46   0.4998         0.26
+  23   snp20      AFF    A    B             26/48/27   0.4752      0.5       0.6905
+  23   snp20    UNAFF    A    B             26/44/29   0.4444   0.4995       0.3141
+  23   snp21      ALL    A    B             39/97/64    0.485   0.4922       0.8858
+  23   snp21      AFF    A    B             22/49/30   0.4851   0.4969        0.842
+  23   snp21    UNAFF    A    B             17/48/34   0.4848   0.4853            1
+  23   snp22      ALL    A    B             48/92/60     0.46   0.4982       0.3199
+  23   snp22      AFF    A    B             21/49/31   0.4851   0.4951       0.8422
+  23   snp22    UNAFF    A    B             27/43/29   0.4343   0.4998       0.2269
+  23   snp23      ALL    B    A             50/97/53    0.485   0.4999       0.6729
+  23   snp23      AFF    B    A             30/43/28   0.4257   0.4998       0.1627
+  23   snp23    UNAFF    B    A             20/54/25   0.5455   0.4987       0.4229
+  23   snp24      ALL    A    B             50/99/51    0.495      0.5       0.8881
+  23   snp24      AFF    A    B             25/46/30   0.4554   0.4988       0.4251
+  23   snp24    UNAFF    A    B             25/53/21   0.5354   0.4992       0.5487
+  23   snp25      ALL    A    B             45/99/56    0.495   0.4985            1
+  23   snp25      AFF    A    B             21/55/25   0.5446   0.4992       0.4284
+  23   snp25    UNAFF    A    B             24/44/31   0.4444   0.4975       0.3136
+  23   snp26      ALL    B    A             48/93/59    0.465   0.4985       0.3942
+  23   snp26      AFF    B    A             21/46/34   0.4554   0.4917        0.543
+  23   snp26    UNAFF    B    A             27/47/25   0.4747   0.4998       0.6875
+  23   snp27      ALL    A    B            46/100/54      0.5   0.4992            1
+  23   snp27      AFF    A    B             25/50/26    0.495      0.5            1
+  23   snp27    UNAFF    A    B             21/50/28   0.5051   0.4975            1
+  23   snp28      ALL    B    A            46/106/48     0.53      0.5       0.4793
+  23   snp28      AFF    B    A             26/53/22   0.5248   0.4992       0.6923
+  23   snp28    UNAFF    B    A             20/53/26   0.5354   0.4982       0.5469
+  23   snp29      ALL    B    A             53/89/58    0.445   0.4997       0.1213
+  23   snp29      AFF    B    A             24/43/34   0.4257   0.4951       0.1627
+  23   snp29    UNAFF    B    A             29/46/24   0.4646   0.4987       0.5458
+  23   snp30      ALL    A    B             49/96/55     0.48   0.4996       0.5736
+  23   snp30      AFF    A    B             26/49/26   0.4851      0.5       0.8422
+  23   snp30    UNAFF    A    B             23/47/29   0.4747   0.4982       0.6872
+  23   snp31      ALL    B    A            44/100/56      0.5   0.4982            1
+  23   snp31      AFF    B    A             21/48/32   0.4752   0.4941       0.6908
+  23   snp31    UNAFF    B    A             23/52/24   0.5253   0.4999       0.6904
+  23   snp32      ALL    B    A             49/94/57     0.47   0.4992       0.3988
+  23   snp32      AFF    B    A             25/45/31   0.4455   0.4982       0.3186
+  23   snp32    UNAFF    B    A             24/49/26   0.4949   0.4998            1
+  23   snp33      ALL    A    B            47/102/51     0.51   0.4998       0.8874
+  23   snp33      AFF    A    B             24/54/23   0.5347      0.5       0.5541
+  23   snp33    UNAFF    A    B             23/48/28   0.4848   0.4987       0.8405
+  23   snp34      ALL    B    A            43/108/49     0.54   0.4996       0.3213
+  23   snp34      AFF    B    A             17/58/26   0.5743    0.496       0.1599
+  23   snp34    UNAFF    B    A             26/50/23   0.5051   0.4995            1
+  23   snp35      ALL    B    A            47/102/51     0.51   0.4998       0.8874
+  23   snp35      AFF    B    A             22/51/28    0.505   0.4982            1
+  23   snp35    UNAFF    B    A             25/51/23   0.5152   0.4998       0.8421
+  23   snp36      ALL    A    B            45/101/54    0.505    0.499            1
+  23   snp36      AFF    A    B             25/51/25    0.505      0.5            1
+  23   snp36    UNAFF    A    B             20/50/29   0.5051   0.4959            1
+  23   snp37      ALL    A    B            47/100/53      0.5   0.4996            1
+  23   snp37      AFF    A    B             23/56/22   0.5545      0.5       0.3238
+  23   snp37    UNAFF    A    B             24/44/31   0.4444   0.4975       0.3136
+  23   snp38      ALL    B    A            46/106/48     0.53      0.5       0.4793
+  23   snp38      AFF    B    A             18/53/30   0.5248   0.4929       0.6859
+  23   snp38    UNAFF    B    A             28/53/18   0.5354   0.4949       0.5421
+  23   snp43      ALL    A    B            48/103/49    0.515      0.5       0.7772
+  23   snp43      AFF    A    B             24/54/23   0.5347      0.5       0.5541
+  23   snp43    UNAFF    A    B             24/49/26   0.4949   0.4998            1
+  23   snp45      ALL    A    B             42/98/60     0.49    0.496       0.8869
+  23   snp45      AFF    A    B             22/49/30   0.4851   0.4969        0.842
+  23   snp45    UNAFF    A    B             20/49/30   0.4949   0.4949            1
+  23   snp47      ALL    B    A            45/102/53     0.51   0.4992       0.8873
+  23   snp47      AFF    B    A             24/46/31   0.4554   0.4976        0.425
+  23   snp47    UNAFF    B    A             21/56/22   0.5657   0.4999       0.2316
+  23   snp49      ALL    A    B             54/88/58     0.44   0.4998      0.09091
+  23   snp49      AFF    A    B             24/47/30   0.4653   0.4982       0.5497
+  23   snp49    UNAFF    A    B             30/41/28   0.4141   0.4998       0.1068