diff test-data/stats.log @ 0:a98caf1d69ab draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/plink commit 555a851b363c015f26d6fcf1f52bcbf3420a0b3b"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/stats.log	Mon Sep 21 10:09:22 2020 +0000
@@ -0,0 +1,40 @@
+PLINK v1.90p 64-bit (16 Jun 2020)
+Options in effect:
+  --bfile plink_input/plink_input
+  --check-sex ycount 0.2 0.8 10 200
+  --freq
+  --hardy
+  --het
+  --make-bed
+  --missing
+  --out plink_output/plink_output
+
+Hostname: p-body.local
+Working directory: /private/var/folders/f7/p887fr2x6hd_jg712040rl580000gn/T/tmpzq_so7fd/job_working_directory/000/89/working
+Start time: Tue Sep 15 10:53:23 2020
+
+Random number seed: 1600192403
+32768 MB RAM detected; reserving 16384 MB for main workspace.
+50 variants loaded from .bim file.
+200 people (0 males, 200 females) loaded from .fam.
+200 phenotype values loaded from .fam.
+Using 1 thread (no multithreaded calculations invoked).
+Before main variant filters, 200 founders and 0 nonfounders present.
+Calculating allele frequencies... done.
+--freq: Allele frequencies (founders only) written to
+plink_output/plink_output.frq .
+--missing: Sample missing data report written to
+plink_output/plink_output.imiss, and variant-based missing data report written
+to plink_output/plink_output.lmiss.
+--hardy: Writing Hardy-Weinberg report (founders only) to
+plink_output/plink_output.hwe ... done.
+50 variants and 200 people pass filters and QC.
+Among remaining phenotypes, 101 are cases and 99 are controls.
+Warning: No Y chromosome data for --check-sex ycount.
+--check-sex: 26 Xchr and 0 Ychr variant(s) scanned, 31 problems detected.
+Report written to plink_output/plink_output.sexcheck .
+--make-bed to plink_output/plink_output.bed + plink_output/plink_output.bim +
+plink_output/plink_output.fam ... done.
+--het: 24 variants scanned, report written to plink_output/plink_output.het .
+
+End time: Tue Sep 15 10:53:23 2020