Mercurial > repos > iuc > polypolish
diff test-data/debug_file_test_2.tsv @ 0:aaa868913641 draft
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/polypolish commit 95f351736787f04c65e830cd9daf9c9c8521893a
| author | iuc |
|---|---|
| date | Thu, 22 Sep 2022 07:51:48 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/debug_file_test_2.tsv Thu Sep 22 07:51:48 2022 +0000 @@ -0,0 +1,15411 @@ +name pos base depth invalid valid pileup status new_base +contig00001 0 C 0.0 0 5 low_depth C +contig00001 1 A 0.0 0 5 low_depth A +contig00001 2 G 0.0 0 5 low_depth G +contig00001 3 C 0.0 0 5 low_depth C +contig00001 4 A 0.0 0 5 low_depth A +contig00001 5 T 0.0 0 5 low_depth T +contig00001 6 C 0.0 0 5 low_depth C +contig00001 7 G 0.0 0 5 low_depth G +contig00001 8 G 0.0 0 5 low_depth G +contig00001 9 A 0.0 0 5 low_depth A +contig00001 10 C 0.0 0 5 low_depth C +contig00001 11 T 0.0 0 5 low_depth T +contig00001 12 C 0.0 0 5 low_depth C +contig00001 13 A 0.0 0 5 low_depth A +contig00001 14 G 0.0 0 5 low_depth G +contig00001 15 A 0.0 0 5 low_depth A +contig00001 16 T 0.0 0 5 low_depth T +contig00001 17 A 0.0 0 5 low_depth A +contig00001 18 G 0.0 0 5 low_depth G +contig00001 19 T 0.0 0 5 low_depth T +contig00001 20 A 0.0 0 5 low_depth A +contig00001 21 A 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2134 A 4.0 1 5 Ax3,Tx1 low_depth A +contig00001 2135 T 4.0 1 5 Tx4 low_depth T +contig00001 2136 A 4.0 1 5 Ax4 low_depth A +contig00001 2137 A 4.0 1 5 Ax4 low_depth A +contig00001 2138 T 5.0 1 5 Tx5 kept T +contig00001 2139 C 5.0 1 5 Cx4,Tx1 none C +contig00001 2140 T 5.0 1 5 Tx5 kept T +contig00001 2141 C 5.0 1 5 Cx4,Gx1 none C +contig00001 2142 G 5.0 1 5 Gx5 kept G +contig00001 2143 G 5.0 1 5 Gx5 kept G +contig00001 2144 A 5.0 1 5 Ax5 kept A +contig00001 2145 A 5.0 1 5 Ax5 kept A +contig00001 2146 A 5.0 1 5 Ax5 kept A +contig00001 2147 C 5.0 1 5 Cx5 kept C +contig00001 2148 C 5.0 1 5 Cx5 kept C +contig00001 2149 T 5.0 1 5 Tx5 kept T +contig00001 2150 G 5.0 1 5 Gx5 kept G +contig00001 2151 C 5.0 1 5 Cx5 kept C +contig00001 2152 T 5.0 1 5 Tx5 kept T +contig00001 2153 G 5.0 1 5 Gx5 kept G +contig00001 2154 T 5.0 1 5 Tx5 kept T +contig00001 2155 T 5.0 1 5 Tx5 kept T +contig00001 2156 G 6.0 1 5 Gx6 kept G +contig00001 2157 C 6.0 1 5 Cx6 kept C +contig00001 2158 T 6.0 1 5 Tx6 kept T 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5 Ax6 kept A +contig00001 2185 G 6.0 1 5 Gx6 kept G +contig00001 2186 A 6.0 1 5 Ax6 kept A +contig00001 2187 C 6.0 1 5 Cx6 kept C +contig00001 2188 G 6.0 1 5 Gx6 kept G +contig00001 2189 C 6.0 1 5 Cx6 kept C +contig00001 2190 A 6.0 1 5 Ax6 kept A +contig00001 2191 A 6.0 1 5 Ax6 kept A +contig00001 2192 C 6.0 1 5 Cx6 kept C +contig00001 2193 G 6.0 1 5 Gx6 kept G +contig00001 2194 C 6.0 1 5 Cx6 kept C +contig00001 2195 G 6.0 1 5 Gx6 kept G +contig00001 2196 A 6.0 1 5 Ax6 kept A +contig00001 2197 G 6.0 1 5 Gx6 kept G +contig00001 2198 C 6.0 1 5 Cx6 kept C +contig00001 2199 A 6.0 1 5 Ax6 kept A +contig00001 2200 G 6.0 1 5 Gx6 kept G +contig00001 2201 T 6.0 1 5 Tx6 kept T +contig00001 2202 A 6.0 1 5 Ax6 kept A +contig00001 2203 G 6.0 1 5 Gx6 kept G +contig00001 2204 A 6.0 1 5 Ax6 kept A +contig00001 2205 C 6.0 1 5 Cx6 kept C +contig00001 2206 T 6.0 1 5 Tx6 kept T +contig00001 2207 C 6.0 1 5 Cx6 kept C +contig00001 2208 C 6.0 1 5 Cx6 kept C +contig00001 2209 T 6.0 1 5 Tx6 kept T +contig00001 2210 T 6.0 1 5 Tx6 kept T +contig00001 2211 C 6.0 1 5 Cx6 kept C +contig00001 2212 T 6.0 1 5 Tx6 kept T +contig00001 2213 G 6.0 1 5 Gx6 kept G +contig00001 2214 T 6.0 1 5 Tx6 kept T +contig00001 2215 T 6.0 1 5 Tx6 kept T +contig00001 2216 G 6.0 1 5 Gx6 kept G +contig00001 2217 A 7.0 1 5 Ax6,Tx1 too_close A +contig00001 2218 T 7.0 1 5 Tx7 kept T +contig00001 2219 A 7.0 1 5 Ax7 kept A +contig00001 2220 A 7.0 1 5 Ax7 kept A +contig00001 2221 G 7.0 1 5 Gx7 kept G +contig00001 2222 C 7.0 1 5 Cx7 kept C +contig00001 2223 A 7.0 1 5 Ax7 kept A +contig00001 2224 A 7.0 1 5 Ax6,Tx1 too_close A +contig00001 2225 G 7.0 1 5 Gx7 kept G +contig00001 2226 C 7.0 1 5 Cx7 kept C +contig00001 2227 A 7.0 1 5 Ax7 kept A +contig00001 2228 T 7.0 1 5 Tx7 kept T +contig00001 2229 C 7.0 1 5 Cx7 kept C +contig00001 2230 T 7.0 1 5 Tx7 kept T +contig00001 2231 C 7.0 1 5 Cx7 kept C +contig00001 2232 A 7.0 1 5 Ax6,Tx1 too_close A +contig00001 2233 T 7.0 1 5 Tx7 kept T +contig00001 2234 T 7.0 1 5 Tx7 kept T 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5 Tx6 kept T +contig00001 2261 T 6.0 1 5 Tx6 kept T +contig00001 2262 C 6.0 1 5 Cx6 kept C +contig00001 2263 T 6.0 1 5 Tx6 kept T +contig00001 2264 G 6.0 1 5 Gx6 kept G +contig00001 2265 G 6.0 1 5 Gx6 kept G +contig00001 2266 C 6.0 1 5 Cx6 kept C +contig00001 2267 G 6.0 1 5 Gx6 kept G +contig00001 2268 T 6.0 1 5 Tx6 kept T +contig00001 2269 G 6.0 1 5 Gx6 kept G +contig00001 2270 A 6.0 1 5 Ax6 kept A +contig00001 2271 A 6.0 1 5 Ax6 kept A +contig00001 2272 G 6.0 1 5 Gx6 kept G +contig00001 2273 T 6.0 1 5 Tx6 kept T +contig00001 2274 C 6.0 1 5 Cx6 kept C +contig00001 2275 G 6.0 1 5 Gx6 kept G +contig00001 2276 C 6.0 1 5 Cx6 kept C +contig00001 2277 C 6.0 1 5 Cx6 kept C +contig00001 2278 G 6.0 1 5 Gx6 kept G +contig00001 2279 A 6.0 1 5 Ax6 kept A +contig00001 2280 C 6.0 1 5 Cx6 kept C +contig00001 2281 T 6.0 1 5 Tx6 kept T +contig00001 2282 G 6.0 1 5 Gx6 kept G +contig00001 2283 A 6.0 1 5 Ax6 kept A +contig00001 2284 A 6.0 1 5 Ax6 kept A +contig00001 2285 T 7.0 1 5 Tx7 kept T +contig00001 2286 G 7.0 1 5 Gx7 kept G +contig00001 2287 C 7.0 1 5 Cx7 kept C +contig00001 2288 C 7.0 1 5 Cx7 kept C +contig00001 2289 A 7.0 1 5 Ax7 kept A +contig00001 2290 G 7.0 1 5 Gx7 kept G +contig00001 2291 C 7.0 1 5 Cx7 kept C +contig00001 2292 A 7.0 1 5 Ax7 kept A +contig00001 2293 A 7.0 1 5 Ax7 kept A +contig00001 2294 T 7.0 1 5 Tx7 kept T +contig00001 2295 C 7.0 1 5 Cx7 kept C +contig00001 2296 T 7.0 1 5 Tx7 kept T +contig00001 2297 C 7.0 1 5 Cx7 kept C +contig00001 2298 T 7.0 1 5 Tx7 kept T +contig00001 2299 T 7.0 1 5 Tx7 kept T +contig00001 2300 T 7.0 1 5 Tx7 kept T +contig00001 2301 T 7.0 1 5 Tx7 kept T +contig00001 2302 T 7.0 1 5 Tx7 kept T +contig00001 2303 G 7.0 1 5 Gx7 kept G +contig00001 2304 A 7.0 1 5 Ax7 kept A +contig00001 2305 G 7.0 1 5 Gx7 kept G +contig00001 2306 T 7.0 1 5 Tx7 kept T +contig00001 2307 C 7.0 1 5 Cx7 kept C +contig00001 2308 T 7.0 1 5 Tx7 kept T +contig00001 2309 C 7.0 1 5 Cx7 kept C +contig00001 2310 A 7.0 1 5 Ax7 kept A +contig00001 2311 T 7.0 1 5 Tx7 kept T +contig00001 2312 T 7.0 1 5 Tx7 kept T +contig00001 2313 T 7.0 1 5 Tx7 kept T +contig00001 2314 T 7.0 1 5 Tx7 kept T +contig00001 2315 G 7.0 1 5 Gx7 kept G +contig00001 2316 C 7.0 1 5 Cx7 kept C +contig00001 2317 A 7.0 1 5 Ax7 kept A +contig00001 2318 T 7.0 1 5 Tx7 kept T +contig00001 2319 C 7.0 1 5 Cx7 kept C +contig00001 2320 T 7.0 1 5 Tx7 kept T +contig00001 2321 C 7.0 1 5 Cx7 kept C +contig00001 2322 G 7.0 1 5 Gx7 kept G +contig00001 2323 G 7.0 1 5 Gx7 kept G +contig00001 2324 C 7.0 1 5 Cx7 kept C +contig00001 2325 A 7.0 1 5 Ax7 kept A +contig00001 2326 A 7.0 1 5 Ax7 kept A +contig00001 2327 T 7.0 1 5 Tx7 kept T +contig00001 2328 C 7.0 1 5 Cx7 kept C +contig00001 2329 T 7.0 1 5 Tx7 kept T +contig00001 2330 C 7.0 1 5 Cx7 kept C +contig00001 2331 T 7.0 1 5 Tx7 kept T +contig00001 2332 T 7.0 1 5 Tx7 kept T +contig00001 2333 T 7.0 1 5 Tx7 kept T +contig00001 2334 C 7.0 1 5 Cx7 kept C +contig00001 2335 T 7.0 1 5 Tx7 kept T +contig00001 2336 G 7.0 1 5 Gx7 kept G +contig00001 2337 A 7.0 1 5 Ax7 kept A +contig00001 2338 T 7.0 1 5 Tx7 kept T +contig00001 2339 T 7.0 1 5 Tx7 kept T +contig00001 2340 G 7.0 1 5 Gx7 kept G +contig00001 2341 T 7.0 1 5 Tx7 kept T +contig00001 2342 C 7.0 1 5 Cx7 kept C +contig00001 2343 C 7.0 1 5 Cx7 kept C +contig00001 2344 A 7.0 1 5 Ax7 kept A +contig00001 2345 G 7.0 1 5 Gx7 kept G +contig00001 2346 T 7.0 1 5 Tx7 kept T +contig00001 2347 T 7.0 1 5 Tx7 kept T +contig00001 2348 G 7.0 1 5 Gx7 kept G +contig00001 2349 C 7.0 1 5 Cx7 kept C +contig00001 2350 A 6.0 1 5 Ax6 kept A +contig00001 2351 T 6.0 1 5 Tx6 kept T +contig00001 2352 T 6.0 1 5 Tx6 kept T +contig00001 2353 T 6.0 1 5 Tx6 kept T +contig00001 2354 T 6.0 1 5 Tx6 kept T +contig00001 2355 A 6.0 1 5 Ax6 kept A +contig00001 2356 G 6.0 1 5 Gx6 kept G +contig00001 2357 T 6.0 1 5 Tx6 kept T +contig00001 2358 A 6.0 1 5 Ax6 kept A +contig00001 2359 A 6.0 1 5 Ax6 kept A +contig00001 2360 G 6.0 1 5 Gx6 kept G +contig00001 2361 C 5.0 1 5 Cx5 kept C +contig00001 2362 T 5.0 1 5 Tx5 kept T +contig00001 2363 C 5.0 1 5 Cx5 kept C +contig00001 2364 T 5.0 1 5 Tx5 kept T +contig00001 2365 T 5.0 1 5 Tx5 kept T +contig00001 2366 T 5.0 1 5 Tx5 kept T +contig00001 2367 T 5.0 1 5 Tx5 kept T +contig00001 2368 T 5.0 1 5 Tx5 kept T +contig00001 2369 G 5.0 1 5 Gx5 kept G +contig00001 2370 A 6.0 1 5 Ax6 kept A +contig00001 2371 T 6.0 1 5 Tx6 kept T +contig00001 2372 T 6.0 1 5 Tx6 kept T +contig00001 2373 C 6.0 1 5 Cx6 kept C +contig00001 2374 T 6.0 1 5 Tx6 kept T +contig00001 2375 C 6.0 1 5 Cx6 kept C +contig00001 2376 A 6.0 1 5 Ax6 kept A +contig00001 2377 A 6.0 1 5 Ax6 kept A +contig00001 2378 A 6.0 1 5 Ax6 kept A +contig00001 2379 T 6.0 1 5 Tx6 kept T +contig00001 2380 C 6.0 1 5 Cx6 kept C +contig00001 2381 C 6.0 1 5 Cx6 kept C +contig00001 2382 G 6.0 1 5 Gx6 kept G +contig00001 2383 G 6.0 1 5 Gx6 kept G +contig00001 2384 C 6.0 1 5 Cx6 kept C +contig00001 2385 G 6.0 1 5 Gx6 kept G +contig00001 2386 T 6.0 1 5 Tx6 kept T +contig00001 2387 C 6.0 1 5 Cx6 kept C +contig00001 2388 A 6.0 1 5 Ax6 kept A +contig00001 2389 A 6.0 1 5 Ax6 kept A +contig00001 2390 C 6.0 1 5 Cx6 kept C +contig00001 2391 C 6.0 1 5 Cx6 kept C +contig00001 2392 A 6.0 1 5 Ax6 kept A +contig00001 2393 T 6.0 1 5 Tx6 kept T +contig00001 2394 A 6.0 1 5 Ax6 kept A +contig00001 2395 C 6.0 1 5 Cx6 kept C +contig00001 2396 C 6.0 1 5 Cx6 kept C +contig00001 2397 A 6.0 1 5 Ax6 kept A +contig00001 2398 G 6.0 1 5 Gx6 kept G +contig00001 2399 C 6.0 1 5 Cx6 kept C +contig00001 2400 A 6.0 1 5 Ax6 kept A +contig00001 2401 G 6.0 1 5 Gx6 kept G +contig00001 2402 A 6.0 1 5 Ax6 kept A +contig00001 2403 G 6.0 1 5 Gx6 kept G +contig00001 2404 G 5.0 1 5 Gx5 kept G +contig00001 2405 A 5.0 1 5 Ax5 kept A +contig00001 2406 A 5.0 1 5 Ax5 kept A +contig00001 2407 G 5.0 1 5 Gx5 kept G +contig00001 2408 C 5.0 1 5 Cx5 kept C +contig00001 2409 A 5.0 1 5 Ax5 kept A +contig00001 2410 T 5.0 1 5 Tx5 kept T +contig00001 2411 C 5.0 1 5 Cx5 kept C +contig00001 2412 A 5.0 1 5 Ax5 kept A +contig00001 2413 G 5.0 1 5 Gx5 kept G +contig00001 2414 C 5.0 1 5 Cx5 kept C +contig00001 2415 A 5.0 1 5 Ax5 kept A +contig00001 2416 C 5.0 1 5 Cx5 kept C +contig00001 2417 C 5.0 1 5 Cx5 kept C +contig00001 2418 A 5.0 1 5 Ax5 kept A +contig00001 2419 G 5.0 1 5 Gx5 kept G +contig00001 2420 C 5.0 1 5 Cx5 kept C +contig00001 2421 A 5.0 1 5 Ax5 kept A +contig00001 2422 C 5.0 1 5 Cx5 kept C +contig00001 2423 G 5.0 1 5 Gx5 kept G +contig00001 2424 C 5.0 1 5 Cx5 kept C +contig00001 2425 T 5.0 1 5 Tx5 kept T +contig00001 2426 C 5.0 1 5 Cx5 kept C +contig00001 2427 C 5.0 1 5 Cx5 kept C +contig00001 2428 C 5.0 1 5 Cx5 kept C +contig00001 2429 A 5.0 1 5 Ax5 kept A +contig00001 2430 A 5.0 1 5 Ax5 kept A +contig00001 2431 G 5.0 1 5 Gx5 kept G +contig00001 2432 C 5.0 1 5 Cx5 kept C +contig00001 2433 A 5.0 1 5 Ax5 kept A +contig00001 2434 T 5.0 1 5 Tx5 kept T +contig00001 2435 T 4.0 1 5 Tx4 low_depth T +contig00001 2436 A 4.0 1 5 Ax4 low_depth A +contig00001 2437 A 4.0 1 5 Ax4 low_depth A +contig00001 2438 G 4.0 1 5 Gx4 low_depth G +contig00001 2439 C 4.0 1 5 Cx4 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3.0 1 5 Ax3 low_depth A +contig00001 2463 A 3.0 1 5 Ax3 low_depth A +contig00001 2464 T 3.0 1 5 Tx3 low_depth T +contig00001 2465 C 3.0 1 5 Cx3 low_depth C +contig00001 2466 A 3.0 1 5 Ax3 low_depth A +contig00001 2467 C 3.0 1 5 Cx3 low_depth C +contig00001 2468 G 3.0 1 5 Gx3 low_depth G +contig00001 2469 A 3.0 1 5 Ax3 low_depth A +contig00001 2470 G 3.0 1 5 Gx3 low_depth G +contig00001 2471 T 3.0 1 5 Tx3 low_depth T +contig00001 2472 A 3.0 1 5 Ax3 low_depth A +contig00001 2473 T 3.0 1 5 Tx3 low_depth T +contig00001 2474 C 3.0 1 5 Cx3 low_depth C +contig00001 2475 C 3.0 1 5 Cx3 low_depth C +contig00001 2476 T 3.0 1 5 Tx3 low_depth T +contig00001 2477 T 3.0 1 5 Tx3 low_depth T +contig00001 2478 T 3.0 1 5 Tx3 low_depth T +contig00001 2479 C 3.0 1 5 Cx3 low_depth C +contig00001 2480 C 3.0 1 5 Cx3 low_depth C +contig00001 2481 T 3.0 1 5 Tx3 low_depth T +contig00001 2482 T 3.0 1 5 Tx3 low_depth T +contig00001 2483 T 3.0 1 5 Tx3 low_depth T +contig00001 2484 A 3.0 1 5 Ax3 low_depth A 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1 5 Gx5 kept G +contig00001 2737 G 5.0 1 5 Gx5 kept G +contig00001 2738 C 5.0 1 5 Cx5 kept C +contig00001 2739 T 5.0 1 5 Tx5 kept T +contig00001 2740 T 5.0 1 5 Tx5 kept T +contig00001 2741 T 5.0 1 5 Tx5 kept T +contig00001 2742 T 5.0 1 5 Tx5 kept T +contig00001 2743 T 5.0 1 5 Tx5 kept T +contig00001 2744 G 5.0 1 5 Gx5 kept G +contig00001 2745 A 5.0 1 5 Ax5 kept A +contig00001 2746 C 5.0 1 5 Cx5 kept C +contig00001 2747 C 5.0 1 5 Cx5 kept C +contig00001 2748 G 5.0 1 5 Gx5 kept G +contig00001 2749 C 5.0 1 5 Cx5 kept C +contig00001 2750 C 5.0 1 5 Cx5 kept C +contig00001 2751 T 5.0 1 5 Tx5 kept T +contig00001 2752 C 5.0 1 5 Cx5 kept C +contig00001 2753 C 5.0 1 5 Cx5 kept C +contig00001 2754 A 5.0 1 5 Ax5 kept A +contig00001 2755 A 5.0 1 5 Ax5 kept A +contig00001 2756 A 5.0 1 5 Ax5 kept A +contig00001 2757 C 5.0 1 5 Cx5 kept C +contig00001 2758 A 5.0 1 5 Ax5 kept A +contig00001 2759 A 5.0 1 5 Ax5 kept A +contig00001 2760 T 5.0 1 5 Tx5 kept T +contig00001 2761 T 5.0 1 5 Tx5 kept T 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2813 C 5.0 1 5 Cx5 kept C +contig00001 2814 A 5.0 1 5 Ax5 kept A +contig00001 2815 A 5.0 1 5 Ax5 kept A +contig00001 2816 A 5.0 1 5 Ax5 kept A +contig00001 2817 C 5.0 1 5 Cx5 kept C +contig00001 2818 A 5.0 1 5 Ax5 kept A +contig00001 2819 T 5.0 1 5 Tx5 kept T +contig00001 2820 A 5.0 1 5 Ax5 kept A +contig00001 2821 A 5.0 1 5 Ax5 kept A +contig00001 2822 A 5.0 1 5 Ax5 kept A +contig00001 2823 T 6.0 1 5 Tx6 kept T +contig00001 2824 C 6.0 1 5 Cx6 kept C +contig00001 2825 A 6.0 1 5 Ax6 kept A +contig00001 2826 C 6.0 1 5 Cx6 kept C +contig00001 2827 C 6.0 1 5 Cx6 kept C +contig00001 2828 T 6.0 1 5 Tx6 kept T +contig00001 2829 C 6.0 1 5 Cx6 kept C +contig00001 2830 A 6.0 1 5 Ax6 kept A +contig00001 2831 C 6.0 1 5 Cx6 kept C +contig00001 2832 T 6.0 1 5 Tx6 kept T +contig00001 2833 T 6.0 1 5 Tx6 kept T +contig00001 2834 A 6.0 1 5 Ax6 kept A +contig00001 2835 A 6.0 1 5 Ax6 kept A +contig00001 2836 G 6.0 1 5 Gx6 kept G +contig00001 2837 T 6.0 1 5 Tx6 kept T +contig00001 2838 G 6.0 1 5 Gx6 kept G 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2864 A 6.0 1 5 Ax6 kept A +contig00001 2865 A 6.0 1 5 Ax6 kept A +contig00001 2866 C 6.0 1 5 Cx6 kept C +contig00001 2867 C 6.0 1 5 Cx6 kept C +contig00001 2868 T 6.0 1 5 Tx6 kept T +contig00001 2869 G 6.0 1 5 Gx6 kept G +contig00001 2870 A 6.0 1 5 Ax6 kept A +contig00001 2871 T 6.0 1 5 Tx6 kept T +contig00001 2872 T 6.0 1 5 Tx6 kept T +contig00001 2873 C 6.0 1 5 Cx6 kept C +contig00001 2874 A 6.0 1 5 Ax6 kept A +contig00001 2875 G 6.0 1 5 Gx6 kept G +contig00001 2876 C 6.0 1 5 Cx6 kept C +contig00001 2877 G 6.0 1 5 Gx6 kept G +contig00001 2878 A 6.0 1 5 Ax6 kept A +contig00001 2879 A 6.0 1 5 Ax6 kept A +contig00001 2880 A 6.0 1 5 Ax6 kept A +contig00001 2881 C 6.0 1 5 Cx6 kept C +contig00001 2882 C 6.0 1 5 Cx6 kept C +contig00001 2883 A 6.0 1 5 Ax6 kept A +contig00001 2884 A 6.0 1 5 Ax6 kept A +contig00001 2885 T 6.0 1 5 Tx6 kept T +contig00001 2886 C 6.0 1 5 Cx6 kept C +contig00001 2887 C 6.0 1 5 Cx6 kept C +contig00001 2888 G 6.0 1 5 Gx6 kept G +contig00001 2889 C 6.0 1 5 Cx6 kept C 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2915 C 6.0 1 5 Cx6 kept C +contig00001 2916 C 6.0 1 5 Cx6 kept C +contig00001 2917 A 6.0 1 5 Ax6 kept A +contig00001 2918 A 6.0 1 5 Ax6 kept A +contig00001 2919 A 6.0 1 5 Ax6 kept A +contig00001 2920 C 6.0 1 5 Cx6 kept C +contig00001 2921 C 6.0 1 5 Cx6 kept C +contig00001 2922 A 6.0 1 5 Ax6 kept A +contig00001 2923 T 6.0 1 5 Tx6 kept T +contig00001 2924 G 6.0 1 5 Gx6 kept G +contig00001 2925 A 6.0 1 5 Ax6 kept A +contig00001 2926 A 6.0 1 5 Ax6 kept A +contig00001 2927 A 6.0 1 5 Ax6 kept A +contig00001 2928 C 6.0 1 5 Cx6 kept C +contig00001 2929 C 6.0 1 5 Cx6 kept C +contig00001 2930 A 6.0 1 5 Ax6 kept A +contig00001 2931 A 6.0 1 5 Ax6 kept A +contig00001 2932 C 6.0 1 5 Cx6 kept C +contig00001 2933 A 6.0 1 5 Ax5,Gx1 too_close A +contig00001 2934 T 6.0 1 5 Tx6 kept T +contig00001 2935 A 6.0 1 5 Ax6 kept A +contig00001 2936 A 6.0 1 5 Ax6 kept A +contig00001 2937 A 6.0 1 5 Ax5,Cx1 too_close A +contig00001 2938 C 6.0 1 5 Cx6 kept C +contig00001 2939 A 6.0 1 5 Ax6 kept A +contig00001 2940 T 6.0 1 5 Tx6 kept T +contig00001 2941 T 6.0 1 5 Tx6 kept T +contig00001 2942 A 6.0 1 5 Ax6 kept A +contig00001 2943 T 6.0 1 5 Tx6 kept T +contig00001 2944 T 6.0 1 5 Gx1,Tx5 too_close T +contig00001 2945 G 6.0 1 5 Gx6 kept G +contig00001 2946 C 6.0 1 5 Cx6 kept C +contig00001 2947 C 6.0 1 5 Cx6 kept C +contig00001 2948 C 6.0 1 5 Cx6 kept C +contig00001 2949 G 6.0 1 5 Gx6 kept G +contig00001 2950 G 6.0 1 5 Gx6 kept G +contig00001 2951 C 6.0 1 5 Cx6 kept C +contig00001 2952 G 6.0 1 5 Gx6 kept G +contig00001 2953 T 6.0 1 5 Tx6 kept T +contig00001 2954 A 6.0 1 5 Ax6 kept A +contig00001 2955 C 5.0 1 5 Cx5 kept C +contig00001 2956 G 5.0 1 5 Gx5 kept G +contig00001 2957 G 5.0 1 5 Gx5 kept G +contig00001 2958 G 5.0 1 5 Gx5 kept G +contig00001 2959 G 4.0 1 5 Gx4 low_depth G +contig00001 2960 A 4.0 1 5 Ax4 low_depth A +contig00001 2961 A 4.0 1 5 Ax4 low_depth A +contig00001 2962 G 4.0 1 5 Gx4 low_depth G +contig00001 2963 G 4.0 1 5 Gx4 low_depth G +contig00001 2964 A 4.0 1 5 Ax4 low_depth A 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1.0 0 5 Ax1 low_depth A +contig00001 3147 T 1.0 0 5 Tx1 low_depth T +contig00001 3148 T 1.0 0 5 Tx1 low_depth T +contig00001 3149 A 1.0 0 5 Ax1 low_depth A +contig00001 3150 G 1.0 0 5 Gx1 low_depth G +contig00001 3151 C 1.0 0 5 Cx1 low_depth C +contig00001 3152 G 1.0 0 5 Gx1 low_depth G +contig00001 3153 G 1.0 0 5 Gx1 low_depth G +contig00001 3154 C 1.0 0 5 Cx1 low_depth C +contig00001 3155 G 1.0 0 5 Gx1 low_depth G +contig00001 3156 T 1.0 0 5 Tx1 low_depth T +contig00001 3157 T 1.0 0 5 Tx1 low_depth T +contig00001 3158 G 1.0 0 5 Gx1 low_depth G +contig00001 3159 A 1.0 0 5 Ax1 low_depth A +contig00001 3160 C 1.0 0 5 Cx1 low_depth C +contig00001 3161 A 1.0 0 5 Ax1 low_depth A +contig00001 3162 G 1.0 0 5 Gx1 low_depth G +contig00001 3163 A 1.0 0 5 Ax1 low_depth A +contig00001 3164 T 1.0 0 5 Tx1 low_depth T +contig00001 3165 G 1.0 0 5 Gx1 low_depth G +contig00001 3166 T 1.0 0 5 Tx1 low_depth T +contig00001 3167 A 1.0 0 5 Ax1 low_depth A +contig00001 3168 T 1.0 0 5 Tx1 low_depth T +contig00001 3169 C 1.0 0 5 Cx1 low_depth C +contig00001 3170 C 1.0 0 5 Cx1 low_depth C +contig00001 3171 A 1.0 0 5 Ax1 low_depth A +contig00001 3172 T 1.0 0 5 Tx1 low_depth T +contig00001 3173 C 1.0 0 5 Cx1 low_depth C +contig00001 3174 T 1.0 0 5 Tx1 low_depth T +contig00001 3175 G 1.0 0 5 Gx1 low_depth G +contig00001 3176 A 1.0 0 5 Ax1 low_depth A +contig00001 3177 A 1.0 0 5 Ax1 low_depth A +contig00001 3178 T 1.0 0 5 Tx1 low_depth T +contig00001 3179 G 1.0 0 5 Gx1 low_depth G +contig00001 3180 C 1.0 0 5 Cx1 low_depth C +contig00001 3181 A 1.0 0 5 Ax1 low_depth A +contig00001 3182 A 1.0 0 5 Ax1 low_depth A +contig00001 3183 T 1.0 0 5 Tx1 low_depth T +contig00001 3184 G 1.0 0 5 Gx1 low_depth G +contig00001 3185 A 1.0 0 5 Ax1 low_depth A +contig00001 3186 A 1.0 0 5 Ax1 low_depth A +contig00001 3187 G 1.0 0 5 Gx1 low_depth G +contig00001 3188 A 1.0 0 5 Ax1 low_depth A +contig00001 3189 A 1.0 0 5 Ax1 low_depth A +contig00001 3190 A 1.0 0 5 Ax1 low_depth A +contig00001 3191 A 0.0 0 5 low_depth A +contig00001 3192 C 0.0 0 5 low_depth C +contig00001 3193 C 0.0 0 5 low_depth C +contig00001 3194 A 0.0 0 5 low_depth A +contig00001 3195 C 0.0 0 5 low_depth C +contig00001 3196 C 0.0 0 5 low_depth C +contig00001 3197 A 0.0 0 5 low_depth A +contig00001 3198 T 0.0 0 5 low_depth T +contig00001 3199 T 0.0 0 5 low_depth T +contig00001 3200 A 0.0 0 5 low_depth A +contig00001 3201 C 0.0 0 5 low_depth C +contig00001 3202 C 0.0 0 5 low_depth C +contig00001 3203 A 0.0 0 5 low_depth A +contig00001 3204 G 0.0 0 5 low_depth G +contig00001 3205 C 0.0 0 5 low_depth C +contig00001 3206 A 0.0 0 5 low_depth A +contig00001 3207 T 0.0 0 5 low_depth T +contig00001 3208 T 0.0 0 5 low_depth T +contig00001 3209 A 0.0 0 5 low_depth A +contig00001 3210 A 0.0 0 5 low_depth A +contig00001 3211 C 0.0 0 5 low_depth C +contig00001 3212 C 0.0 0 5 low_depth C +contig00001 3213 G 0.0 0 5 low_depth G +contig00001 3214 T 0.0 0 5 low_depth T +contig00001 3215 C 0.0 0 5 low_depth C +contig00001 3216 A 0.0 0 5 low_depth A +contig00001 3217 A 0.0 0 5 low_depth A +contig00001 3218 A 0.0 0 5 low_depth A +contig00001 3219 C 0.0 0 5 low_depth C +contig00001 3220 T 0.0 0 5 low_depth T +contig00001 3221 A 0.0 0 5 low_depth A +contig00001 3222 T 0.0 0 5 low_depth T +contig00001 3223 C 0.0 0 5 low_depth C +contig00001 3224 A 0.0 0 5 low_depth A +contig00001 3225 A 0.0 0 5 low_depth A +contig00001 3226 A 0.0 0 5 low_depth A +contig00001 3227 A 0.0 0 5 low_depth A +contig00001 3228 T 0.0 0 5 low_depth T +contig00001 3229 A 0.0 0 5 low_depth A +contig00001 3230 T 0.0 0 5 low_depth T +contig00001 3231 A 0.0 0 5 low_depth A +contig00001 3232 A 0.0 0 5 low_depth A +contig00001 3233 C 0.0 0 5 low_depth C +contig00001 3234 G 0.0 0 5 low_depth G +contig00001 3235 T 0.0 0 5 low_depth T +contig00001 3236 T 0.0 0 5 low_depth T +contig00001 3237 G 0.0 0 5 low_depth G +contig00001 3238 A 0.0 0 5 low_depth A +contig00001 3239 C 0.0 0 5 low_depth C +contig00001 3240 G 0.0 0 5 low_depth G +contig00001 3241 A 0.0 0 5 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