Mercurial > repos > iuc > porechop
changeset 3:543cbeef3949 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/porechop commit 6ea6e816d7c92599628ab3c0a0826fb7476270b0"
| author | iuc |
|---|---|
| date | Thu, 24 Feb 2022 20:08:33 +0000 |
| parents | 5f76b20953e5 |
| children | |
| files | porechop.xml |
| diffstat | 1 files changed, 7 insertions(+), 2 deletions(-) [+] |
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--- a/porechop.xml Fri Apr 02 19:38:37 2021 +0000 +++ b/porechop.xml Thu Feb 24 20:08:33 2022 +0000 @@ -1,4 +1,4 @@ -<tool id="porechop" name="Porechop" version="@WRAPPER_VERSION@" profile="20.01"> +<tool id="porechop" name="Porechop" version="@WRAPPER_VERSION@+galaxy0" profile="20.01"> <description>adapter trimmer for Oxford Nanopore reads</description> <macros> <token name="@WRAPPER_VERSION@">0.2.4</token> @@ -32,7 +32,7 @@ ]]></command> <inputs> - <param name="input_file" type="data" format="fasta,fasta.gz,fastqsanger,fastqsanger.gz" label="Input FASTA/FASTQ" help="FASTA/FASTQ of input reads" /> + <param name="input_file" type="data" format="fasta,fasta.gz,fastqsanger,fastqsanger.gz,fastq,fastq.gz" label="Input FASTA/FASTQ" help="FASTA/FASTQ of input reads" /> <param name="format" type="select" label="Output format for the reads" help="Output format for the reads"> <option selected="True" value="fasta">fasta</option> <option value="fastq">fastq</option> @@ -105,6 +105,11 @@ <output name="outfile" ftype="fastqsanger" file="out.fastq"/> </test> <test> + <param name="input_file" ftype="fastq.gz" value="test_format.fastq.gz"/> + <param name="format" value="fastq"/> + <output name="outfile" ftype="fastqsanger" file="out.fastq"/> + </test> + <test> <param name="input_file" ftype="fasta" value="test_format.fasta"/> <param name="format" value="fasta.gz"/> <output name="outfile" ftype="fasta.gz" file="out.fasta.gz" compare="sim_size"/>