diff poretools_events.xml @ 0:1d835c691480 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/poretools_events.xml	Tue Dec 19 14:45:24 2017 -0500
@@ -0,0 +1,36 @@
+<?xml version="1.0"?>
+<tool id="poretools_events" name="Extract nanopore events" version="@VERSION@.0">
+    <description>from a set of sequencing reads</description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="requirements" />
+    <command detect_errors="aggressive">
+    <![CDATA[
+        poretools events $precalled '$input' > '$output'
+    ]]>
+    </command>
+    <inputs>
+        <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" />
+        <param name="precalled" argument="--pre-basecalled" type="boolean" truevalue="--pre-basecalled" falsevalue="--pre-basecalled" label="Report pre-basecalled events" />
+    </inputs>
+    <outputs>
+        <data name="output" format="tabular" />
+    </outputs>
+    <tests>
+        <test>
+            <expand macro="test_input" />
+            <param name="precalled" value="false" />
+            <output name="output" file="poretools-events-out1.tabular" ftype="tabular" />
+        </test>
+        <test>
+            <expand macro="test_input" />
+            <param name="precalled" value="true" />
+            <output name="output" file="poretools-events-out2.tabular" ftype="tabular" />
+        </test>
+    </tests>
+    <help>
+        Extract the raw nanopore events from each FAST5 file.
+    </help>
+    <expand macro="citations" />
+</tool>