Mercurial > repos > iuc > poretools_hist

diff poretools_hist.xml @ 1:5a82eb9e1b89 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit d50758dbe64462ba3cdcb7f1df0bcc57a310deab"
author iuc
date Sun, 19 Jan 2020 09:06:53 -0500
parents 47936349f3e9
children d1805f9c4c82
line wrap: on
line diff
--- a/poretools_hist.xml	Tue Dec 19 14:57:21 2017 -0500
+++ b/poretools_hist.xml	Sun Jan 19 09:06:53 2020 -0500
@@ -1,5 +1,5 @@
 <?xml version="1.0"?>
-<tool id="poretools_hist" name="Generate histogram" version="@VERSION@.0">
+<tool id="poretools_hist" name="Generate histogram" version="@VERSION@.1">
     <description>of nanopore read lengths</description>
     <macros>
         <import>macros.xml</import>
@@ -7,8 +7,8 @@
     <expand macro="requirements" />
     <command detect_errors="aggressive">
     <![CDATA[
-        poretools hist '$input' --saveas histogram.$extension --min-length $min_length
-            --max-length $max_length --num-bins $num_bins $theme_bw && mv histogram.$extension '$output'
+@MPLBACKEND@
+poretools hist '$input' --saveas histogram.$extension --min-length $min_length --max-length $max_length --num-bins $num_bins $theme_bw && mv histogram.$extension '$output'
     ]]>
     </command>
     <inputs>
@@ -24,17 +24,17 @@
         <test>
             <expand macro="test_input" />
             <param name="extension" value="png" />
-            <output name="output" file="poretools-hist-out1.png" ftype="png" lines_diff="73" />
+            <output name="output" file="poretools-hist-out1.png" ftype="png" compare="sim_size" />
         </test>
         <test>
             <expand macro="test_input" />
             <param name="extension" value="pdf" />
-            <output name="output" file="poretools-hist-out1.pdf" ftype="pdf" lines_diff="36" />
+            <output name="output" file="poretools-hist-out1.pdf" ftype="pdf" lines_diff="272" />
         </test>
         <test>
             <expand macro="test_input" />
             <param name="extension" value="svg" />
-            <output name="output" file="poretools-hist-out1.svg" ftype="svg" lines_diff="138" />
+            <output name="output" file="poretools-hist-out1.svg" ftype="svg" lines_diff="140" />
         </test>
     </tests>
     <help>