comparison poretools_qualdist.xml @ 0:44111014e7c1 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
author iuc
date Tue, 19 Dec 2017 14:48:28 -0500
parents
children 72dfdbfab3cc
comparison
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-1:000000000000 0:44111014e7c1
1 <?xml version="1.0"?>
2 <tool id="poretools_qualdist" name="Show quality" version="@VERSION@.0">
3 <description>score distribution in nanopore sequencing reads</description>
4 <macros>
5 <import>macros.xml</import>
6 </macros>
7 <expand macro="requirements" />
8 <command detect_errors="aggressive">
9 <![CDATA[
10 poretools qualdist '$input' > '$output'
11 ]]>
12 </command>
13 <inputs>
14 <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" />
15 </inputs>
16 <outputs>
17 <data name="output" format="tabular" />
18 </outputs>
19 <tests>
20 <test>
21 <expand macro="test_input" />
22 <output name="output" file="poretools-qualdist-out1.tabular" ftype="tabular" />
23 </test>
24 <test>
25 <expand macro="test_input" />
26 <output name="output" file="poretools-qualdist-out2.tabular" ftype="tabular" />
27 </test>
28 </tests>
29 <help>
30 Get the the quality score composition of a set of FAST5 files.
31 </help>
32 <expand macro="citations" />
33 </tool>