diff poretools_qualdist.xml @ 0:44111014e7c1 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
author iuc
date Tue, 19 Dec 2017 14:48:28 -0500
parents
children 72dfdbfab3cc
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/poretools_qualdist.xml	Tue Dec 19 14:48:28 2017 -0500
@@ -0,0 +1,33 @@
+<?xml version="1.0"?>
+<tool id="poretools_qualdist" name="Show quality" version="@VERSION@.0">
+    <description>score distribution in nanopore sequencing reads</description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="requirements" />
+    <command detect_errors="aggressive">
+    <![CDATA[
+        poretools qualdist '$input' > '$output'
+    ]]>
+    </command>
+    <inputs>
+        <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" />
+    </inputs>
+    <outputs>
+        <data name="output" format="tabular" />
+    </outputs>
+    <tests>
+        <test>
+            <expand macro="test_input" />
+            <output name="output" file="poretools-qualdist-out1.tabular" ftype="tabular" />
+        </test>
+        <test>
+            <expand macro="test_input" />
+            <output name="output" file="poretools-qualdist-out2.tabular" ftype="tabular" />
+        </test>
+    </tests>
+    <help>
+        Get the the quality score composition of a set of FAST5 files.
+    </help>
+    <expand macro="citations" />
+</tool>