Mercurial > repos > iuc > poretools_qualpos

diff poretools_qualpos.xml @ 1:4fe6b96aff72 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit d50758dbe64462ba3cdcb7f1df0bcc57a310deab"
author iuc
date Sun, 19 Jan 2020 09:07:34 -0500
parents 2e22ebec211a
children
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--- a/poretools_qualpos.xml	Tue Dec 19 14:53:26 2017 -0500
+++ b/poretools_qualpos.xml	Sun Jan 19 09:07:34 2020 -0500
@@ -1,5 +1,5 @@
 <?xml version="1.0"?>
-<tool id="poretools_qualpos" name="Generate box-whisker" version="@VERSION@.0">
+<tool id="poretools_qualpos" name="Generate box-whisker" version="@VERSION@.1">
     <description>plot of quality score distribution over positions in nanopore reads</description>
     <macros>
         <import>macros.xml</import>
@@ -7,8 +7,8 @@
     <expand macro="requirements" />
     <command detect_errors="aggressive">
     <![CDATA[
-        poretools qualpos '$input' --saveas qualpos.$extension --min-length $min_length
-            --max-length $max_length --bin-width $bin_width $theme_bw && mv qualpos.$extension '$output'
+@MPLBACKEND@
+poretools qualpos '$input' --saveas qualpos.$extension --min-length $min_length --max-length $max_length --bin-width $bin_width $theme_bw && mv qualpos.$extension '$output'
     ]]>
     </command>
     <inputs>
@@ -30,7 +30,7 @@
         <test>
             <expand macro="test_input" />
             <param name="extension" value="png" />
-            <output name="output" file="poretools-qualpos-out1.png" ftype="png" lines_diff="195" />
+            <output name="output" file="poretools-qualpos-out1.png" ftype="png" compare="sim_size" />
         </test>
         <test>
             <expand macro="test_input" />