Mercurial > repos > iuc > poretools_stats
comparison macros.xml @ 2:c1cbe2575d32 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit 506782d1e671505617ff539e6811fcdcc2c02cd5
| author | iuc |
|---|---|
| date | Fri, 27 Sep 2024 07:55:27 +0000 |
| parents | 4b17acf9b6ab |
| children |
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| 1:4b17acf9b6ab | 2:c1cbe2575d32 |
|---|---|
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="package" version="@VERSION@">poretools</requirement> | 5 <requirement type="package" version="@VERSION@">poretools</requirement> |
| 6 <yield /> | 6 <yield /> |
| 7 </requirements> | 7 </requirements> |
| 8 </xml> | 8 </xml> |
| 9 <xml name="bio_tools"> | |
| 10 <xrefs> | |
| 11 <xref type="bio.tools">poretools</xref> | |
| 12 </xrefs> | |
| 13 </xml> | |
| 9 <token name="@VERSION@">0.6.1a1</token> | 14 <token name="@VERSION@">0.6.1a1</token> |
| 15 <token name="@PROFILE@">23.1</token> | |
| 10 <xml name="citations"> | 16 <xml name="citations"> |
| 11 <citations> | 17 <citations> |
| 12 <citation type="doi">10.1093/bioinformatics/btu555</citation> | 18 <citation type="doi">10.1093/bioinformatics/btu555</citation> |
| 13 </citations> | 19 </citations> |
| 14 </xml> | 20 </xml> |
| 17 <option value="png">PNG</option> | 23 <option value="png">PNG</option> |
| 18 <option value="pdf">PDF</option> | 24 <option value="pdf">PDF</option> |
| 19 <option value="svg">SVG</option> | 25 <option value="svg">SVG</option> |
| 20 <yield /> | 26 <yield /> |
| 21 </param> | 27 </param> |
| 22 <param name="theme_bw" argument="--theme-bw" type="boolean" truevalue="--theme-bw" falsevalue="" label="Use a monochrome color scheme" /> | 28 <param argument="--theme-bw" type="boolean" truevalue="--theme-bw" falsevalue="" label="Use a monochrome color scheme" /> |
| 23 </xml> | 29 </xml> |
| 24 <xml name="image_output"> | 30 <xml name="image_output"> |
| 25 <data name="output" format="png"> | 31 <data name="output" format="png"> |
| 26 <change_format> | 32 <change_format> |
| 27 <when input="extension" value="pdf" format="pdf" /> | 33 <when input="extension" value="pdf" format="pdf" /> |
| 29 <yield /> | 35 <yield /> |
| 30 </change_format> | 36 </change_format> |
| 31 </data> | 37 </data> |
| 32 </xml> | 38 </xml> |
| 33 <xml name="stat_options"> | 39 <xml name="stat_options"> |
| 34 <param name="type" argument="--type" type="select" label="Filter by type of read"> | 40 <param argument="--type" type="select" label="Filter by type of read"> |
| 35 <option value="all" selected="true">All</option> | 41 <option value="all" selected="true">All</option> |
| 36 <option value="fwd">Forward reads</option> | 42 <option value="fwd">Forward reads</option> |
| 37 <option value="rev">Reverse reads</option> | 43 <option value="rev">Reverse reads</option> |
| 38 <option value="fwd,rev">Forward and reverse</option> | 44 <option value="fwd,rev">Forward and reverse</option> |
| 39 <option value="2D">2D</option> | 45 <option value="2D">2D</option> |
| 42 </xml> | 48 </xml> |
| 43 <xml name="test_input"> | 49 <xml name="test_input"> |
| 44 <param name="input" ftype="fast5.tar" value="poretools-in1.tar.bz2" /> | 50 <param name="input" ftype="fast5.tar" value="poretools-in1.tar.bz2" /> |
| 45 </xml> | 51 </xml> |
| 46 <xml name="length_options"> | 52 <xml name="length_options"> |
| 47 <param name="min_length" argument="--min-length" type="integer" value="0" label="Minimum read length" /> | 53 <param argument="--min-length" type="integer" value="0" label="Minimum read length" /> |
| 48 <param name="max_length" argument="--max-length" type="integer" value="1000000000" label="Maximum read length" /> | 54 <param argument="--max-length" type="integer" value="1000000000" label="Maximum read length" /> |
| 49 </xml> | 55 </xml> |
| 50 <token name="@MPLBACKEND@"><![CDATA[export MPLBACKEND="agg" &&]]></token> | 56 <token name="@MPLBACKEND@"><![CDATA[export MPLBACKEND="agg" &&]]></token> |
| 51 <token name="@profile@">18.09</token> | |
| 52 </macros> | 57 </macros> |