Mercurial > repos > iuc > poretools_stats
diff macros.xml @ 0:ae4c8446ce30 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
author | iuc |
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date | Tue, 19 Dec 2017 14:51:34 -0500 |
parents | |
children | 4b17acf9b6ab |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Tue Dec 19 14:51:34 2017 -0500 @@ -0,0 +1,50 @@ +<?xml version="1.0"?> +<macros> + <xml name="requirements"> + <requirements> + <requirement type="package" version="@VERSION@">poretools</requirement> + <yield /> + </requirements> + </xml> + <token name="@VERSION@">0.6.1a1</token> + <xml name="citations"> + <citations> + <citation type="doi">10.1093/bioinformatics/btu555</citation> + </citations> + </xml> + <xml name="plot_options"> + <param name="extension" type="select" label="File format for histogram"> + <option value="png">PNG</option> + <option value="pdf">PDF</option> + <option value="svg">SVG</option> + <yield /> + </param> + <param name="theme_bw" argument="--theme-bw" type="boolean" truevalue="--theme-bw" falsevalue="" label="Use a monochrome color scheme" /> + </xml> + <xml name="image_output"> + <data name="output" format="png"> + <change_format> + <when input="extension" value="pdf" format="pdf" /> + <when input="extension" value="svg" format="svg" /> + <yield /> + </change_format> + </data> + </xml> + <xml name="stat_options"> + <param name="type" argument="--type" type="select" label="Filter by type of read"> + <option value="all" selected="true">All</option> + <option value="fwd">Forward reads</option> + <option value="rev">Reverse reads</option> + <option value="fwd,rev">Forward and reverse</option> + <option value="2D">2D</option> + <option value="best">Best</option> + </param> + </xml> + <xml name="test_input"> + <param name="input" ftype="fast5.tar" value="poretools-in1.tar.bz2" /> + </xml> + <xml name="length_options"> + <param name="min_length" argument="--min-length" type="integer" value="0" label="Minimum read length" /> + <param name="max_length" argument="--max-length" type="integer" value="1000000000" label="Maximum read length" /> + </xml> +</macros>