Mercurial > repos > iuc > poretools_tabular
annotate macros.xml @ 1:2cb2feb94f0e draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit d50758dbe64462ba3cdcb7f1df0bcc57a310deab"
author | iuc |
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date | Sun, 19 Jan 2020 09:07:13 -0500 |
parents | 7f0b324de883 |
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rev | line source |
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7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
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changeset
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1 <?xml version="1.0"?> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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2 <macros> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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3 <xml name="requirements"> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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4 <requirements> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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5 <requirement type="package" version="@VERSION@">poretools</requirement> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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6 <yield /> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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7 </requirements> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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8 </xml> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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9 <token name="@VERSION@">0.6.1a1</token> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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10 <xml name="citations"> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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11 <citations> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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12 <citation type="doi">10.1093/bioinformatics/btu555</citation> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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13 </citations> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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14 </xml> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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15 <xml name="plot_options"> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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16 <param name="extension" type="select" label="File format for histogram"> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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17 <option value="png">PNG</option> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
|
18 <option value="pdf">PDF</option> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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19 <option value="svg">SVG</option> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
|
20 <yield /> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
|
21 </param> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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22 <param name="theme_bw" argument="--theme-bw" type="boolean" truevalue="--theme-bw" falsevalue="" label="Use a monochrome color scheme" /> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
|
23 </xml> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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24 <xml name="image_output"> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
|
25 <data name="output" format="png"> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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26 <change_format> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
|
27 <when input="extension" value="pdf" format="pdf" /> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
|
28 <when input="extension" value="svg" format="svg" /> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
|
29 <yield /> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
|
30 </change_format> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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31 </data> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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32 </xml> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
|
33 <xml name="stat_options"> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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34 <param name="type" argument="--type" type="select" label="Filter by type of read"> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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35 <option value="all" selected="true">All</option> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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36 <option value="fwd">Forward reads</option> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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37 <option value="rev">Reverse reads</option> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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38 <option value="fwd,rev">Forward and reverse</option> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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39 <option value="2D">2D</option> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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40 <option value="best">Best</option> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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41 </param> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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42 </xml> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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43 <xml name="test_input"> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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44 <param name="input" ftype="fast5.tar" value="poretools-in1.tar.bz2" /> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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45 </xml> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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46 <xml name="length_options"> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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47 <param name="min_length" argument="--min-length" type="integer" value="0" label="Minimum read length" /> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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48 <param name="max_length" argument="--max-length" type="integer" value="1000000000" label="Maximum read length" /> |
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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49 </xml> |
1
2cb2feb94f0e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit d50758dbe64462ba3cdcb7f1df0bcc57a310deab"
iuc
parents:
0
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50 <token name="@MPLBACKEND@"><![CDATA[export MPLBACKEND="agg" &&]]></token> |
2cb2feb94f0e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit d50758dbe64462ba3cdcb7f1df0bcc57a310deab"
iuc
parents:
0
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51 <token name="@profile@">18.09</token> |
0
7f0b324de883
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff
changeset
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52 </macros> |