Mercurial > repos > iuc > poretools_tabular
diff poretools_tabular.xml @ 0:7f0b324de883 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
author | iuc |
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date | Tue, 19 Dec 2017 14:56:23 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/poretools_tabular.xml Tue Dec 19 14:56:23 2017 -0500 @@ -0,0 +1,56 @@ +<?xml version="1.0"?> +<tool id="poretools_tabular" name="Extract FASTQ" version="@VERSION@.0"> + <description>in tabular format from a set of FAST5 files</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements" /> + <command detect_errors="aggressive"> + <![CDATA[ + poretools tabular --type $type '$input' > '$output' + ]]> + </command> + <inputs> + <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" /> + <expand macro="stat_options" /> + </inputs> + <outputs> + <data name="output" format="tabular" /> + </outputs> + <tests> + <test> + <expand macro="test_input" /> + <param name="types" value="fwd" /> + <param name="detailed" value="true" /> + <output name="output" file="poretools-tabular-out1.tabular" ftype="tabular" /> + </test> + <test> + <expand macro="test_input" /> + <param name="types" value="rev" /> + <param name="detailed" value="false" /> + <output name="output" file="poretools-tabular-out2.tabular" ftype="tabular" /> + </test> + <test> + <expand macro="test_input" /> + <param name="types" value="2D" /> + <param name="detailed" value="true" /> + <output name="output" file="poretools-tabular-out3.tabular" ftype="tabular" /> + </test> + <test> + <expand macro="test_input" /> + <param name="types" value="best" /> + <param name="detailed" value="false" /> + <output name="output" file="poretools-tabular-out4.tabular" ftype="tabular" /> + </test> + <test> + <expand macro="test_input" /> + <param name="types" value="all" /> + <param name="detailed" value="true" /> + <output name="output" file="poretools-tabular-out5.tabular" ftype="tabular" /> + </test> + </tests> + <help> + Dump the length, name, sequence, and quality scores of the sequence in one or a set of FAST5 files. + </help> + <expand macro="citations" /> +</tool>