view macros.xml @ 0:e5072f0d3772 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34

<?xml version="1.0"?>
<macros>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="@VERSION@">poretools</requirement>
            <yield />
        </requirements>
    </xml>
    <token name="@VERSION@">0.6.1a1</token>
    <xml name="citations">
        <citations>
            <citation type="doi">10.1093/bioinformatics/btu555</citation>
        </citations>
    </xml>
    <xml name="plot_options">
        <param name="extension" type="select" label="File format for histogram">
            <option value="png">PNG</option>
            <option value="pdf">PDF</option>
            <option value="svg">SVG</option>
            <yield />
        </param>
        <param name="theme_bw" argument="--theme-bw" type="boolean" truevalue="--theme-bw" falsevalue="" label="Use a monochrome color scheme" />
    </xml>
    <xml name="image_output">
        <data name="output" format="png">
            <change_format>
                <when input="extension" value="pdf" format="pdf" />
                <when input="extension" value="svg" format="svg" />
                <yield />
            </change_format>
        </data>
    </xml>
    <xml name="stat_options">
        <param name="type" argument="--type" type="select" label="Filter by type of read">
            <option value="all" selected="true">All</option>
            <option value="fwd">Forward reads</option>
            <option value="rev">Reverse reads</option>
            <option value="fwd,rev">Forward and reverse</option>
            <option value="2D">2D</option>
            <option value="best">Best</option>
        </param>
    </xml>
    <xml name="test_input">
        <param name="input" ftype="fast5.tar" value="poretools-in1.tar.bz2" />
    </xml>
    <xml name="length_options">
        <param name="min_length" argument="--min-length" type="integer" value="0" label="Minimum read length" />
        <param name="max_length" argument="--max-length" type="integer" value="1000000000" label="Maximum read length" />
    </xml>
</macros>