# HG changeset patch # User iuc # Date 1513713150 18000 # Node ID e5072f0d3772b476786ffdef4cace5563f2dc435 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34 diff -r 000000000000 -r e5072f0d3772 macros.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Tue Dec 19 14:52:30 2017 -0500 @@ -0,0 +1,50 @@ + + + + + poretools + + + + 0.6.1a1 + + + 10.1093/bioinformatics/btu555 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff -r 000000000000 -r e5072f0d3772 poretools_times.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/poretools_times.xml Tue Dec 19 14:52:30 2017 -0500 @@ -0,0 +1,55 @@ + + + and channel information from a set of FAST5 files + + macros.xml + + + + '$output' + ]]> + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Collect read size statistics from a set of FAST5 files. + + + diff -r 000000000000 -r e5072f0d3772 test-data/poretools-events-out1.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/poretools-events-out1.tabular Tue Dec 19 14:52:30 2017 -0500 @@ -0,0 +1,3083 @@ +file strand mean start stdv length model_state model_level move p_model_state mp_model_state p_mp_model_state p_A p_C p_G p_T raw_index +.poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 pre_basecalled 52.3276716165 955054 5.19878084063 17 +.poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 pre_basecalled 45.2667833984 955071 1.3678974514 25 +.poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 pre_basecalled 55.5428768382 955096 4.1309184471 17 +.poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 pre_basecalled 81.4959472656 955113 5.98801696437 14 +.poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 pre_basecalled 89.1865418294 955127 0.657985513478 15 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000000000000 -r e5072f0d3772 test-data/poretools-extract-out1.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/poretools-extract-out1.fasta Tue Dec 19 14:52:30 2017 -0500 @@ -0,0 +1,24 @@ +>b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 +GAAATTGCTGGTTGCTCCCCGAGGGGCCTATAAACAATCGGATAAGGGTCTAAGTCAGGGCGAAAAAGATTTGGGGGCTCCTAATCTCCGATAATGAGTGCCGCAACATACGGATAGTACCTTTATGCGTAACCGCTCCATACGACAAATAATTATTTATATACGGTACCTACGGAACCAAAATTGACAAGTTCGTACTTTT +>b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 +ATCGACCATATTGGCTTTTTGGTTATCCTGGTCTACCTCTTGTTGTCTTGGTGGGTGCCAACAGCTATGCATCTGTTGCATCAATCGTGACGGGAAACGAGAGGACAATTTCCCGGGTTAAACATGCCGATTGTCAGCCGCGGGGGCTGGGGAGGTTCC +>b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 +CTTCTGTTGTGGTGCTCTTGCTCCCCAGGGGCCTATAAACGTGCACATAGGGTCTAAGTCAGCGAAAAAGATTTGAGGCTCCCGTATAGATAATGGATCCCCTCAGCCCTAGCTGACCGTCATCCGTAACGCCTCCATACATAAATAATTATTTAGCTCTAGTACACCCAGGCGGATCGCTTCTGGTTTTATATTTCTTGATTACTGATGCA +>935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 +GCTTCTTCTGCTTATATTGCTTAGAAGGAAATACGAGAGGAGAAAGAGTAGATGATGATAAAGGGTCGACTAATTATTTCCGAAGTTTGTTAAAGTCGAAATCGCTTCGAATTTGAAATTGTTGCTGACGCAAGTTAGCGATGCGCGATCCCAGGAGTATAGGGGTTGAAAACGGTTCCATTTGATAAGGTTTTCCATTAATGACGTCACGTTGTTTGGTATTTCCTTCTATTTTCTCCGAAGCGCCCCTCTCTCTCTCATCTCACGTCAGATTCAATTTTATTACAACAAATGTGAAAAGTGGGTTCGCAGAGGTCGCTTAAGCCATTTTCTTAGATACAGCTTGAAAACGAATCTACAGAACAAATCTCCTGCCATTACACTCAGAGTCATGACGGTCGTGTTTATAGAGT +>935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 +ACTCTAACTCAGGCTGGTATCTGAGTGTAATGGCGCAGTTGTCTGTAGGGTCGTTCAAGCTGTATCAAGAAATGAGTAAGCGAAAACCTGCGAGCCGATTTTCGCTTTGTTTAGTAAGGTTAGTGACGTGAGGGTGAGAGAGAGAGAGAGCGTTCGGAGAAAATAGAAGGAGAACCCAAACAACGTGACGTCATTGATGAAAACCTTATCGGGAACCCGTTTCAACCCCTATACTCCTCGGCGCGTAGGCTAACTGCGTAGCAACATTCAATTCAGCAGTTTTCCTGTCAGCGACTTCGGAAGCTTAGTCAACAGTGTTTATCAGCTCCTCTTCCTCTCGTATTTCGTTCAAGCAATATAGCAGAGGCGCCTGTCC +>935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 +CATTCTTTGGTGCTGATCCTGCGAGGAGAGGGGGAGGGGAACAATGGTAGCCACTAAATCTATAACAATTATTTCAGAAGTTGTCCGCTTGAATCATTCATTTGAAATTGTTAGTGACGCAAGTTAATGCGCGATCCCAGGAGCGGGCTCGTCCAGTTTACAATTGTCCATGCGTAGTCAGTTGTTATGTTGATTCCTGTTACCGATAGGGTATATAACGCTCCTAGTCGATTCGATTTGCTTGGCGCCATCCAAGTATTCCAGAGTCCTTAGCATTTTCTTAATGGCACGTGAAAACGAATCCCCTAAGAGCCACTTATCACGTCCGATTACATACTCCAGTCATGACGCTTCTGTTTATGTTTCTTAACCA +>e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 +ATGTTTCTTCAGTGATACCTGTGACATCCGGAAAGGAGGAGGAGGATCAGAAAGGAGGAGTGTGACATAACGCTGACAGTGCGTGCTTAGGTTCGTTAATAAACAAAGCCATATTACGGAGATGGCGTAATCACCTACGATGAAAGTGGTCACGTACGCGTGCCACCTGGGCATCGTCCTCACCCCTTCATTAAATTACAGGCTTTTGACTCCTTCAACCTTCTCGTTGTAATTGGTTAGTACTTATCCTATCTTATTCGCGATCGGCGTTCGATTGGATTTCGCTTCGAATGTAATCCGTATGCGCAATACAAATATTTGAGCTAATTTCCTCTCTTTACGTAATCGTTTTCGTCACCGTCGTCAATTATCGATACGGGAATCAAGTCGAACGAACCCCTGACCGAGAATCAGAAAAACTTTCAGAAGAAAAAGGAAGAAGAGAAAGCTCTTTCACATTGTAAACCAAACGCGAAAGCTCCCGAAAACAAAGGGCGGCGATTCTAAACATTTGGTTTATGTT +>e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 +GAACACAACTGTTTCCCAGTACACGCTTTGTTTAAGCTTTCGCGTTGGTTCCATGTGAAGAGCTTCTGTTCTTCCTTTTTTGGTATGAAAGTTTTAGTTCTCTTCAGAGTCGTCCCACTTGATGTCCCGTATCGCTTGTGGACATTGTAGAAATGATCGTAAGGGCAGAGGAATTAATTAAAACTTTGTGGTGCCATCCCATTACGGTCGAGCGAATCCAGTAGCACCAGTACCCAGTAAGAACGAACCCTGAGCCAATTACACAGAAGGTTGAAGGAGTCAAGCTGTAGTTGGAAGGGGTGAAGGTCCGCACAAGATTCGATCCTCGTTATCGTACCTGATTACACATCTCTGCGTGATATGATGATTCTTTATTAGCAACCGAGCACGCACTGTTGGCGTTATGTTCGGATACTACGGTCTATCCTCTCAAACGGTCCAGCTCCCAACATCGGCGTCAGTCA +>e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 +TTGTGTTTCTTCTTATGACTTGCTATGCGCAGGGGGGAGGAGAGATGTAGCGGAGGGCAGAGTGTGAAAGGGGTAGTTCATTATGCTGTCGTTAAGCCTCCGGGGCTATTGAAAACGATGAATGGGGCCAGGCGCTGGTCACGTACACGTGCGACACTGATGAAACGTTCCTCACCATTCATTAAATTACCGGCTTTTAAACGTGAACATGCTGTTGTAATTCTTCATGGTGGTGTAATGTACTTAGCAGTAGCGTTCAATTGGATTTCGCTTCGAATGTAGTCGATCTGCGCATCCACTGGTCGACGATTTCCTCTCTTTACTGATCGTAGTTCGTCACGTCGTCGTACGATAGGATCAAAGTCGCGGGATGGCTATCCCCGGGCGAACTTTCCAGAGAAGGAAGAAGAAAGACCTTTCGGCTTGTAGTAAGACCCCGAAGACTCGAAAACAGGGCAACGCGAATTCCACTTCGTTATGTTCTTACTATTGGA +>2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 +CATGTTTCTGCTGATATTGCTAATGGCTGAACTGGAAATAAGGATCCGTTGCTTGCCAACAACTATACTGCGTGGTATTTTCCCAGTGGAAAGATCGGGAACCTTTGATCTTCAATATAGTTACAATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTTGGGTATAACAGGATGAGGAGGACGATTCGAAGTCACGATCATGCGCCCAAGTCAGAATGACTCCACACTACTCCTCCTCAGGACCATTTATAAATAAACAGTGATCAAGATTCCAACAATTAAGATGGCTTGAAACCAATTTCTGCTCTTGTTTTTGTTCCCACTCCCCCCTCCCCCCGAGGTCAGGATGAAGTATTAACTCTGAAGATAAAGGACCCCACGACGACAACGGCTTCCAGTTACTTCGAAGGCATTTTTCTACTTCTACTTCCCCTCCGTCTCATCCTCCTCCTCAGCTACCAAATTCACAATAGGACCGCAGGAAAAGTCTGTAGCGAATAGAACCTTCTTCACTACGGTTTCGTACCTAAAATGTTCTGGAAAAATGGATAGAAAAGAATCTTTTAAAATCGAAATCCGATTTTCGGAGTGTTAACAATGTAACTGTTGTAGAAAAGGAGCGGTAAATGAGACGTGGGGAATAAGATACAGAGCAACCACTGTCGTTAAGGACCGTTTGAGTGTTT +>2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 +ACACTAGCATCTGTCTGGCCCCGATATTTGTAGTATGTACTTTACGTGTACTGTTACTATGGTATTTTCACCCTCAGTTTGCCCTTGTCACTCGAAAGTCGAATTCAGTGTTTTAAAAGATTGTCTGGTTCTATCGGTTCCGAGCAGTTTTAATAGAACTGATCAATGAAGAAGGTTCGTTCGAGCGAACTTCCAGTGATCTTGTGAATTTGAGCTGAGGAGGAGATGAAAGAGGGAAGTAGAAGTAGAAAAATTGCATCGAAATATGGAATAAATTGTATCGTCGGTCTTGCTTTTATCTGTCAGTTATACTTCAGTAGGAGGGAGTGGGATAACGACAGCAATTAGTTCAGCCTTAGTGTTGAGGAATCTGGTTCTTTAACATCTTTGGTGGGAGGAGTGTCCTTGATTTAATATGCAGAAGTATCCTTGCTGCGAATCGTCATCATCCTTTAACAATAGGATGAAAACCGTTAAAATGCCGACAGTTGGACCTGCGAGCCGCCGGCCCGTATTCATGGGAAAGTACCGCATTAACGTGTGTCAGGCGGGACGTATTATTTCCCGTTCAGCCGATTAAGTATACAGGCACAGAGACTTCC +>2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 +GTATTTCTTATGATATTAGATGTAGGCTGGAAATAGAATGCGTGCTTTACAGGCCTCCTCTGCGTATGTTTCCATGGAAGCCGTAGGAACCTTTGATCTTCATACTTGCCCTATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTGATATAACAGGATACGGAAAGAGTTCGAAGTCGAATCGTCCAGCAAGTCGAATGACTCTAAAGACATCGGCACGGCCTTTGAGGCTCGTATATGCCTAATTCCAACAATGCAAAGTACGTGGAACAGATTTCTGCTCTTTTTTGTTCCACTCCGCCAGCCCCCCGAGGTCAGGATGAAATATTACTCTGAAAACCGCCAACCCACGGGACAGCTACGTCGAATGTCGTCGAACAGTTCTATTCCTTCCCCTCCGTTAGTACTACTCTAGGCTACTCAATTCAGGCGATAGAAGGAAAAGTCTGTACCAGGCGGGTTCTTCGGCTTTTCAATGCGCGCTGTTCTGGGGAGCTATCGCTGCAAAGAATCTTTTAAAATCGAGTCGAGTTTTCAGAGTGTTCCTCAATGTAACTGTTGGCAAAGGAGCGGGCCTGGCAGACGTGGGGAATAAGACCCCAAAACCACTTCGTGCACATCGTTCTGGTGTTCATCTGTTCTTAGCTCTTGT diff -r 000000000000 -r e5072f0d3772 test-data/poretools-extract-out1.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/poretools-extract-out1.fastq Tue Dec 19 14:52:30 2017 -0500 @@ -0,0 +1,48 @@ +@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 +GAAATTGCTGGTTGCTCCCCGAGGGGCCTATAAACAATCGGATAAGGGTCTAAGTCAGGGCGAAAAAGATTTGGGGGCTCCTAATCTCCGATAATGAGTGCCGCAACATACGGATAGTACCTTTATGCGTAACCGCTCCATACGACAAATAATTATTTATATACGGTACCTACGGAACCAAAATTGACAAGTTCGTACTTTT ++ +)))))+*,,*,*--,-,..---./0..++++-/-//**)*)))*,,.///---**)))*))+/,//-.,00.--)***+*+))),)*)))+).*----.--**..,-,**,**,+++++,+*+*)**+,,,**((+,,+,))()**+,++,+**+--,)(((((()(((((()(())))+,//),+--.+(())(((()((( +@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 +ATCGACCATATTGGCTTTTTGGTTATCCTGGTCTACCTCTTGTTGTCTTGGTGGGTGCCAACAGCTATGCATCTGTTGCATCAATCGTGACGGGAAACGAGAGGACAATTTCCCGGGTTAAACATGCCGATTGTCAGCCGCGGGGGCTGGGGAGGTTCC ++ +""$"#$$&%$(&$"#$,<0-+(-'%(#$%$&(&%$$$%'-,(0'$)%(&$"'"#"'"$#$"&#&$##&%$%'%&'00,&'%#$##$$&"####%$'#%(''$$"$"($/=,)''#$$'%%'$'$)$%&$%()''%%"%&%%%(*#(%"$&&(&##&)&$ +@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 +CTTCTGTTGTGGTGCTCTTGCTCCCCAGGGGCCTATAAACGTGCACATAGGGTCTAAGTCAGCGAAAAAGATTTGAGGCTCCCGTATAGATAATGGATCCCCTCAGCCCTAGCTGACCGTCATCCGTAACGCCTCCATACATAAATAATTATTTAGCTCTAGTACACCCAGGCGGATCGCTTCTGGTTTTATATTTCTTGATTACTGATGCA ++ +"#')-,;42;7<8544/22.**)-(*()*(')%%&''-*0..+)%%$"'%'*/'%%&$&$%&##$%%(%)%/4)&#&'#$#$#$*#$"#&$$#'&$#*$%&##(&"*%)%&$&&&**(&(%%(%%),-%&%')*/,,(((%$%'$##","#,2''#$$('('*()(+)''&*)%$'(%#&%4.01-17;2&&$'12'')"%)&#$#"$)&'# +@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 +GCTTCTTCTGCTTATATTGCTTAGAAGGAAATACGAGAGGAGAAAGAGTAGATGATGATAAAGGGTCGACTAATTATTTCCGAAGTTTGTTAAAGTCGAAATCGCTTCGAATTTGAAATTGTTGCTGACGCAAGTTAGCGATGCGCGATCCCAGGAGTATAGGGGTTGAAAACGGTTCCATTTGATAAGGTTTTCCATTAATGACGTCACGTTGTTTGGTATTTCCTTCTATTTTCTCCGAAGCGCCCCTCTCTCTCTCATCTCACGTCAGATTCAATTTTATTACAACAAATGTGAAAAGTGGGTTCGCAGAGGTCGCTTAAGCCATTTTCTTAGATACAGCTTGAAAACGAATCTACAGAACAAATCTCCTGCCATTACACTCAGAGTCATGACGGTCGTGTTTATAGAGT ++ +))****-+.,,,++,,-,...-*++/,0.1,++,,..-0/)+-/,----,+,,,-,--,-+****+**+**+-.-.0500-.0-,,+*,.,,,,+-*+./.++,.////10+/,/03/10/.0..-*--./0001.--.++../////0--,./0//****.//..--).0-,-*,,+*)10,+-+++,,./+,+++*)+-++++**)))*))*)+*+,*,.0,.+,****,--)))*)()+(*))))))))**,,,,*))((*))**))(*++(+*-,-,())))**+-0-*****./,)****-0/..,-,,.--,-+,****-./680/--*)+000/.//-,/03/..0--.*,++*+*)**)*)*++++.//0/,++**+))*+++*)))**++-,-,3520...**) +@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 +ACTCTAACTCAGGCTGGTATCTGAGTGTAATGGCGCAGTTGTCTGTAGGGTCGTTCAAGCTGTATCAAGAAATGAGTAAGCGAAAACCTGCGAGCCGATTTTCGCTTTGTTTAGTAAGGTTAGTGACGTGAGGGTGAGAGAGAGAGAGAGCGTTCGGAGAAAATAGAAGGAGAACCCAAACAACGTGACGTCATTGATGAAAACCTTATCGGGAACCCGTTTCAACCCCTATACTCCTCGGCGCGTAGGCTAACTGCGTAGCAACATTCAATTCAGCAGTTTTCCTGTCAGCGACTTCGGAAGCTTAGTCAACAGTGTTTATCAGCTCCTCTTCCTCTCGTATTTCGTTCAAGCAATATAGCAGAGGCGCCTGTCC ++ +"$###$$$#%#$"###$'###$"&'.)*(*+,-)$%$&/&$1(*),&&%%('$1)%##%%))+((%#$+&*%&&%$%%'(*,--+()$+-+),#*'%')4:*'$$*:,')'#%#%$&%$+++$*%$'&&)&&&&')'+*-,+*'&*$)%'&&'')'*)+,--'&&'$)(2&$)%%&(&&$&%#%%)$%&&((*(+$')(&(%##'+,+,)'((%%$%(*02*')&))+'"%$%%&'$#&%$$(#$&$%%##'&&,*))*((&%#(%*,(*(**$'()%#*=?/-&*)*(##&%'&+,(+*,)%'&*+*+('%($#'#*2+('%$$$&&%#$(+(('''(')'+30,$)*'((*('&&%#$$%%&%''$'$%&&1/$ +@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 +CATTCTTTGGTGCTGATCCTGCGAGGAGAGGGGGAGGGGAACAATGGTAGCCACTAAATCTATAACAATTATTTCAGAAGTTGTCCGCTTGAATCATTCATTTGAAATTGTTAGTGACGCAAGTTAATGCGCGATCCCAGGAGCGGGCTCGTCCAGTTTACAATTGTCCATGCGTAGTCAGTTGTTATGTTGATTCCTGTTACCGATAGGGTATATAACGCTCCTAGTCGATTCGATTTGCTTGGCGCCATCCAAGTATTCCAGAGTCCTTAGCATTTTCTTAATGGCACGTGAAAACGAATCCCCTAAGAGCCACTTATCACGTCCGATTACATACTCCAGTCATGACGCTTCTGTTTATGTTTCTTAACCA ++ +##''$%)0%%)$&''',&'(&&$-+*-'('*+(('$$&#'#$%$%##$$#%$$#"$%$'$##$%"%#%)&$,5+($),,*0(&,####&)()(**)+)&$&,$&%1,3-*.''#'#$'('/*)+&&&+$&'%()*((%%)$&$#####"$%3%)')5/($$##&*$0%&()#$%%$$&'%(+%&-)%&%,-##((%$%&)*%&&#%""####"#"$$##""#('#$''$$&)0(&(.//$$&&###%&&+%('&%##%+)&&'%$#&%#%$#"(%/FA/+,(&'##$&%%#(&%*1)*()'())*("#$$(%%(&%*%$$$"$#($%##+$$%$####%$'&((&&$$%$)'1.+*:7,))',7&%)#$#$$# +@e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 +ATGTTTCTTCAGTGATACCTGTGACATCCGGAAAGGAGGAGGAGGATCAGAAAGGAGGAGTGTGACATAACGCTGACAGTGCGTGCTTAGGTTCGTTAATAAACAAAGCCATATTACGGAGATGGCGTAATCACCTACGATGAAAGTGGTCACGTACGCGTGCCACCTGGGCATCGTCCTCACCCCTTCATTAAATTACAGGCTTTTGACTCCTTCAACCTTCTCGTTGTAATTGGTTAGTACTTATCCTATCTTATTCGCGATCGGCGTTCGATTGGATTTCGCTTCGAATGTAATCCGTATGCGCAATACAAATATTTGAGCTAATTTCCTCTCTTTACGTAATCGTTTTCGTCACCGTCGTCAATTATCGATACGGGAATCAAGTCGAACGAACCCCTGACCGAGAATCAGAAAAACTTTCAGAAGAAAAAGGAAGAAGAGAAAGCTCTTTCACATTGTAAACCAAACGCGAAAGCTCCCGAAAACAAAGGGCGGCGATTCTAAACATTTGGTTTATGTT ++ +(((*-,+,,,++*()(())*-)),....+/-,.),-++--./-,))*()))+*+*)*-*,**)())((*)(*()(*--+**)()()*(())))*,--*,+,.,---+)+))()**((())*+,-/./,--,++****+,+,,-02.///..-.--...,,))))))*++,+*++,+++*)*++-+*+**)+++**+)))(((())+*()((()(()))))))((((),-./--+*)))((((()((((((*+,,+,*+*,++++****,1.+*++,+,-.2-,+,-,+*,*.-.1/----*+,*+**++***./.-+*-+))))*,,-/*-*****-,*))))**,+++-,++++*+*,-../.-,**)*)+******-+,+)*++*+-.//../..,,+,..+.)+-+,))*+*++,+*,----.//-0662.-,--.-0.../.,+))-,2/.-++*****+**++++-+-...+,+*****,,.,+*.+,,,++*)))+/.,-10,+***)**++***+* +@e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 +GAACACAACTGTTTCCCAGTACACGCTTTGTTTAAGCTTTCGCGTTGGTTCCATGTGAAGAGCTTCTGTTCTTCCTTTTTTGGTATGAAAGTTTTAGTTCTCTTCAGAGTCGTCCCACTTGATGTCCCGTATCGCTTGTGGACATTGTAGAAATGATCGTAAGGGCAGAGGAATTAATTAAAACTTTGTGGTGCCATCCCATTACGGTCGAGCGAATCCAGTAGCACCAGTACCCAGTAAGAACGAACCCTGAGCCAATTACACAGAAGGTTGAAGGAGTCAAGCTGTAGTTGGAAGGGGTGAAGGTCCGCACAAGATTCGATCCTCGTTATCGTACCTGATTACACATCTCTGCGTGATATGATGATTCTTTATTAGCAACCGAGCACGCACTGTTGGCGTTATGTTCGGATACTACGGTCTATCCTCTCAAACGGTCCAGCTCCCAACATCGGCGTCAGTCA ++ +#"#$"$%%#$#*3.$%&%$(#$%#$#'-,(4*$#$$%(2+'&%%*.%%,:'%&,)*,'%(%%$*,'''(*(%,'%)2>B>/'#$$&&$)+%/;,&#$()'&'&&($%#$(&&*&$$$#%%$$'&)+%&$)#%$##%'%&%#$$#&-%##&$&$#$#%$$$%&##&$$$&,-('(###'$')'#$+14(&$$($%$%#$&#'*+)*%)+$$&%$'&&(%&&%)"%$$'&%#)#%'#'$'%'(%&%%&%&%#$###&#&'+&####$($$$#'*)(+,-*$)&&'$&%$$$$((%+'&&$%#''$$$#&$%%$#$$$,%(*&"#&###(&*$%%%$&#$$%$&)+()$(&'$%$$##$)"&$#$##$&#&.#&1)&(%%'%&#'%#&&&%$&%$%(',('('&)+&%%-&#"$#%$%$$'$$,)(),'%%$$$###'##*((%(%%'%#$##"%##$(*-)&'&%# +@e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 +TTGTGTTTCTTCTTATGACTTGCTATGCGCAGGGGGGAGGAGAGATGTAGCGGAGGGCAGAGTGTGAAAGGGGTAGTTCATTATGCTGTCGTTAAGCCTCCGGGGCTATTGAAAACGATGAATGGGGCCAGGCGCTGGTCACGTACACGTGCGACACTGATGAAACGTTCCTCACCATTCATTAAATTACCGGCTTTTAAACGTGAACATGCTGTTGTAATTCTTCATGGTGGTGTAATGTACTTAGCAGTAGCGTTCAATTGGATTTCGCTTCGAATGTAGTCGATCTGCGCATCCACTGGTCGACGATTTCCTCTCTTTACTGATCGTAGTTCGTCACGTCGTCGTACGATAGGATCAAAGTCGCGGGATGGCTATCCCCGGGCGAACTTTCCAGAGAAGGAAGAAGAAAGACCTTTCGGCTTGTAGTAAGACCCCGAAGACTCGAAAACAGGGCAACGCGAATTCCACTTCGTTATGTTCTTACTATTGGA ++ +#$$*)*8+$()&(%%$#$#&'$#"%%#$($+&,&(-(',.,*%$%%$$$"$$('%%'&('%%%%%$##$#$$"$#$%&%$&$#'$$#$)''+&$%"&##($#$$###$*&*$&(%%$&($&$&"###%$$#&"#!%$$($$%$'$&%&'*%&$#$#$%$$$($/$/.2)'$#%#%(#**)%)&'$#)%#%''(%')0'$%#$$'$&#$#&$&$&,2-,/%1,"%*%%$#%&##%%&)((('&%(&&%'*%&'$((-:'%(**)((/5)%$&,,*%)#'%$$#&$"#'$)$&%%%#$$%#$#"'$"#$"$17)&##%&')3'##$$$$$#%#%+)'&)&#+*,)&'%%&#%#%#$*%&%$%%##&&#%%'#'#$$%##$%)$'%%'%#'$#)48$$#%#'#*)-,,))')((%#$#&&-'(##'%*%$&"""$#$#')%$'($$#"'$&&)$&'%(*&%%'$$)+)6*(#%#%'%&*,)(&3*$%'$%%$(,,&# +@2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 +CATGTTTCTGCTGATATTGCTAATGGCTGAACTGGAAATAAGGATCCGTTGCTTGCCAACAACTATACTGCGTGGTATTTTCCCAGTGGAAAGATCGGGAACCTTTGATCTTCAATATAGTTACAATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTTGGGTATAACAGGATGAGGAGGACGATTCGAAGTCACGATCATGCGCCCAAGTCAGAATGACTCCACACTACTCCTCCTCAGGACCATTTATAAATAAACAGTGATCAAGATTCCAACAATTAAGATGGCTTGAAACCAATTTCTGCTCTTGTTTTTGTTCCCACTCCCCCCTCCCCCCGAGGTCAGGATGAAGTATTAACTCTGAAGATAAAGGACCCCACGACGACAACGGCTTCCAGTTACTTCGAAGGCATTTTTCTACTTCTACTTCCCCTCCGTCTCATCCTCCTCCTCAGCTACCAAATTCACAATAGGACCGCAGGAAAAGTCTGTAGCGAATAGAACCTTCTTCACTACGGTTTCGTACCTAAAATGTTCTGGAAAAATGGATAGAAAAGAATCTTTTAAAATCGAAATCCGATTTTCGGAGTGTTAACAATGTAACTGTTGTAGAAAAGGAGCGGTAAATGAGACGTGGGGAATAAGATACAGAGCAACCACTGTCGTTAAGGACCGTTTGAGTGTTT ++ +))))+-*)*)+**++**+)*)*,-,,+++-+++/./20.//.+...*.,-,--+***,+++++**+++,.//.,++,.54.320/--.,-.++-.,,.-++++*,+,-./0/.0000/..0-,----/.----,+++++,00.//./.++*+//0.//00/285/+*+**+-,,,,,-,**,,,+--00*0/)*.,+,+.,,,+++,,-+*,*+-+,+,--..,+****)**+++,+++***)*+)**)-,.20//02-))**++*+**+*+**-/0./-,,,--))*))++)+*++..,,+-./.+++++,++++,025-,5.-/,-//0/---,,.43430,,-+,+,.,/..-.+***)))))..//-+,***)))+)++))),***)**))(())--.-())((,((*(*(((*+-0/---,*/**)*,-/.0.-,.,++)*,+,,-,--,-,+++**))**,+*+*))))*))))*))+(+,-+,**)))*)*)))*++((*+****,,,---+*,+*+,0,++*)))(,03.--1+***-*-)*)+****))))+))+***+21--/.-)))**)*)***-10--,-,,+*+)))+,..,,/,,,,-,+)())***)())*++++,+)))***+*))((,+(((())(*)()()***,,---,,,+)((((,()**.*(***+))) +@2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 +ACACTAGCATCTGTCTGGCCCCGATATTTGTAGTATGTACTTTACGTGTACTGTTACTATGGTATTTTCACCCTCAGTTTGCCCTTGTCACTCGAAAGTCGAATTCAGTGTTTTAAAAGATTGTCTGGTTCTATCGGTTCCGAGCAGTTTTAATAGAACTGATCAATGAAGAAGGTTCGTTCGAGCGAACTTCCAGTGATCTTGTGAATTTGAGCTGAGGAGGAGATGAAAGAGGGAAGTAGAAGTAGAAAAATTGCATCGAAATATGGAATAAATTGTATCGTCGGTCTTGCTTTTATCTGTCAGTTATACTTCAGTAGGAGGGAGTGGGATAACGACAGCAATTAGTTCAGCCTTAGTGTTGAGGAATCTGGTTCTTTAACATCTTTGGTGGGAGGAGTGTCCTTGATTTAATATGCAGAAGTATCCTTGCTGCGAATCGTCATCATCCTTTAACAATAGGATGAAAACCGTTAAAATGCCGACAGTTGGACCTGCGAGCCGCCGGCCCGTATTCATGGGAAAGTACCGCATTAACGTGTGTCAGGCGGGACGTATTATTTCCCGTTCAGCCGATTAAGTATACAGGCACAGAGACTTCC ++ +####"##&%##$#+%%##%#'%#$%$)-)'($%&&((,()+-'&'(($%#(&%1-$##$'$#%#'08+'$$%#"&$#&.+$%*#('%%##$$&&)))$(''($(('##+)6<4)'(*()',,(.'&%&'*($%&%##-,('#$$"$$'04)&%$#('&%%%%'$##(%%$*$'$#'''&),%$%$%$%$$$*+%$%(%%&&''%%(&%1-(%$"#%&&+**-,'&''((&#'#$&%'&%'#(&+#)*))//+&&%$%$%$%&)&&$),-*&%$$$&)%$#$'&+(#%'&''$##(2(%&$%$..('($&%%*.+'$%%%),')'()%*'&)%#&##"###&%%%'*$'++($$%#'%%"($)&#$%''&(**)$+*&)3-&%$$$#$)&$%'%)*')&&$%%&$#&($#+0&$"##%###'%(%'&(%$%(%#&$%$&$&$#%###$$&$%&+&&$$%&$$'('&(&&&#%$$'%%&'%'"%###$$#-)%#$#%'%%$&'''"&%$$'%$$)#(-*&)+09))'#'#%&%&$$(&%%%)(+()&%$('"""$"#&#'$$'./(*&&('%$#$$##'%$&$&%$"&"))##$#'$##"$)'$ +@2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 +GTATTTCTTATGATATTAGATGTAGGCTGGAAATAGAATGCGTGCTTTACAGGCCTCCTCTGCGTATGTTTCCATGGAAGCCGTAGGAACCTTTGATCTTCATACTTGCCCTATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTGATATAACAGGATACGGAAAGAGTTCGAAGTCGAATCGTCCAGCAAGTCGAATGACTCTAAAGACATCGGCACGGCCTTTGAGGCTCGTATATGCCTAATTCCAACAATGCAAAGTACGTGGAACAGATTTCTGCTCTTTTTTGTTCCACTCCGCCAGCCCCCCGAGGTCAGGATGAAATATTACTCTGAAAACCGCCAACCCACGGGACAGCTACGTCGAATGTCGTCGAACAGTTCTATTCCTTCCCCTCCGTTAGTACTACTCTAGGCTACTCAATTCAGGCGATAGAAGGAAAAGTCTGTACCAGGCGGGTTCTTCGGCTTTTCAATGCGCGCTGTTCTGGGGAGCTATCGCTGCAAAGAATCTTTTAAAATCGAGTCGAGTTTTCAGAGTGTTCCTCAATGTAACTGTTGGCAAAGGAGCGGGCCTGGCAGACGTGGGGAATAAGACCCCAAAACCACTTCGTGCACATCGTTCTGGTGTTCATCTGTTCTTAGCTCTTGT ++ +"##)7.'-(&&$$&#'$$$''%$%$&(),210)&&)&)+&.-+'((,%#))())&%)(')+)*+.***CC/&'$'')(*###$&%)5)1')&./%%)%++)&%$%%.#''(#%*)+&&).*)'*%$+A/'&%+%)''-;+)-'++-1)9>0()((%&%&&(')%$%#+-/&'#%+3&**/&''&'%'%$($%&$'(&'(&)*++)('&'#$$#"#"#%'$&%#$#")$&.'#&$%$$$$($&#)#%$#%,10*)%$&$,)&'"%#"%$&%1&')&%%%'-A:10/,+(*0KLI,,I330,**.,$&$'&,7255.)+(%'&&+$,%%%'$$$&&%$$&''$*)$$%#%$&$'%#$$$#"##$$%$$(#*'#$&%#&$#$$$(%&%'1)'%$/,(')3+0-,,1*)0$##'#$%$&&(#$$##"#$#'&$,(&&#$%$&$$)&+,++**(%+'&&%$$$%"$"#%$,5')(''&',:M/($&,&($%$$((7,&%%--$&$##$%$$%))$+*',.--+-3/'$')%&##&$*($''-3E3)$)'&('&)#&&())+)))('(&/*))',-&0**('&%#$##$)#'&+,,(&&&%)'%%$%&&*+&%$%"#$$$%)(()%&"#&#)&1.+,**++-C$&$$&$4(%)$$##$#$&$% diff -r 000000000000 -r e5072f0d3772 test-data/poretools-fastq-out1.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/poretools-fastq-out1.fasta Tue Dec 19 14:52:30 2017 -0500 @@ -0,0 +1,12 @@ +>b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/2016_3_4_3507_1_ch128_read95_strand.fast5 +GAAATTGCTGGTTGCTCCCCGAGGGGCCTATAAACAATCGGATAAGGGTCTAAGTCAGGGCGAAAAAGATTTGGGGGCTCCTAATCTCCGATAATGAGTGCCGCAACATACGGATAGTACCTTTATGCGTAACCGCTCCATACGACAAATAATTATTTATATACGGTACCTACGGAACCAAAATTGACAAGTTCGTACTTTT +>b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/2016_3_4_3507_1_ch128_read95_strand.fast5 +ATCGACCATATTGGCTTTTTGGTTATCCTGGTCTACCTCTTGTTGTCTTGGTGGGTGCCAACAGCTATGCATCTGTTGCATCAATCGTGACGGGAAACGAGAGGACAATTTCCCGGGTTAAACATGCCGATTGTCAGCCGCGGGGGCTGGGGAGGTTCC +>b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/2016_3_4_3507_1_ch128_read95_strand.fast5 +CTTCTGTTGTGGTGCTCTTGCTCCCCAGGGGCCTATAAACGTGCACATAGGGTCTAAGTCAGCGAAAAAGATTTGAGGCTCCCGTATAGATAATGGATCCCCTCAGCCCTAGCTGACCGTCATCCGTAACGCCTCCATACATAAATAATTATTTAGCTCTAGTACACCCAGGCGGATCGCTTCTGGTTTTATATTTCTTGATTACTGATGCA +>935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/2016_3_4_3507_1_ch128_read430_strand.fast5 +GCTTCTTCTGCTTATATTGCTTAGAAGGAAATACGAGAGGAGAAAGAGTAGATGATGATAAAGGGTCGACTAATTATTTCCGAAGTTTGTTAAAGTCGAAATCGCTTCGAATTTGAAATTGTTGCTGACGCAAGTTAGCGATGCGCGATCCCAGGAGTATAGGGGTTGAAAACGGTTCCATTTGATAAGGTTTTCCATTAATGACGTCACGTTGTTTGGTATTTCCTTCTATTTTCTCCGAAGCGCCCCTCTCTCTCTCATCTCACGTCAGATTCAATTTTATTACAACAAATGTGAAAAGTGGGTTCGCAGAGGTCGCTTAAGCCATTTTCTTAGATACAGCTTGAAAACGAATCTACAGAACAAATCTCCTGCCATTACACTCAGAGTCATGACGGTCGTGTTTATAGAGT +>935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/2016_3_4_3507_1_ch128_read430_strand.fast5 +ACTCTAACTCAGGCTGGTATCTGAGTGTAATGGCGCAGTTGTCTGTAGGGTCGTTCAAGCTGTATCAAGAAATGAGTAAGCGAAAACCTGCGAGCCGATTTTCGCTTTGTTTAGTAAGGTTAGTGACGTGAGGGTGAGAGAGAGAGAGAGCGTTCGGAGAAAATAGAAGGAGAACCCAAACAACGTGACGTCATTGATGAAAACCTTATCGGGAACCCGTTTCAACCCCTATACTCCTCGGCGCGTAGGCTAACTGCGTAGCAACATTCAATTCAGCAGTTTTCCTGTCAGCGACTTCGGAAGCTTAGTCAACAGTGTTTATCAGCTCCTCTTCCTCTCGTATTTCGTTCAAGCAATATAGCAGAGGCGCCTGTCC +>935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/2016_3_4_3507_1_ch128_read430_strand.fast5 +CATTCTTTGGTGCTGATCCTGCGAGGAGAGGGGGAGGGGAACAATGGTAGCCACTAAATCTATAACAATTATTTCAGAAGTTGTCCGCTTGAATCATTCATTTGAAATTGTTAGTGACGCAAGTTAATGCGCGATCCCAGGAGCGGGCTCGTCCAGTTTACAATTGTCCATGCGTAGTCAGTTGTTATGTTGATTCCTGTTACCGATAGGGTATATAACGCTCCTAGTCGATTCGATTTGCTTGGCGCCATCCAAGTATTCCAGAGTCCTTAGCATTTTCTTAATGGCACGTGAAAACGAATCCCCTAAGAGCCACTTATCACGTCCGATTACATACTCCAGTCATGACGCTTCTGTTTATGTTTCTTAACCA diff -r 000000000000 -r e5072f0d3772 test-data/poretools-fastq-out1.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/poretools-fastq-out1.fastq Tue Dec 19 14:52:30 2017 -0500 @@ -0,0 +1,24 @@ +@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/2016_3_4_3507_1_ch128_read95_strand.fast5 +GAAATTGCTGGTTGCTCCCCGAGGGGCCTATAAACAATCGGATAAGGGTCTAAGTCAGGGCGAAAAAGATTTGGGGGCTCCTAATCTCCGATAATGAGTGCCGCAACATACGGATAGTACCTTTATGCGTAACCGCTCCATACGACAAATAATTATTTATATACGGTACCTACGGAACCAAAATTGACAAGTTCGTACTTTT ++ +)))))+*,,*,*--,-,..---./0..++++-/-//**)*)))*,,.///---**)))*))+/,//-.,00.--)***+*+))),)*)))+).*----.--**..,-,**,**,+++++,+*+*)**+,,,**((+,,+,))()**+,++,+**+--,)(((((()(((((()(())))+,//),+--.+(())(((()((( +@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/2016_3_4_3507_1_ch128_read95_strand.fast5 +ATCGACCATATTGGCTTTTTGGTTATCCTGGTCTACCTCTTGTTGTCTTGGTGGGTGCCAACAGCTATGCATCTGTTGCATCAATCGTGACGGGAAACGAGAGGACAATTTCCCGGGTTAAACATGCCGATTGTCAGCCGCGGGGGCTGGGGAGGTTCC ++ +""$"#$$&%$(&$"#$,<0-+(-'%(#$%$&(&%$$$%'-,(0'$)%(&$"'"#"'"$#$"&#&$##&%$%'%&'00,&'%#$##$$&"####%$'#%(''$$"$"($/=,)''#$$'%%'$'$)$%&$%()''%%"%&%%%(*#(%"$&&(&##&)&$ +@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/2016_3_4_3507_1_ch128_read95_strand.fast5 +CTTCTGTTGTGGTGCTCTTGCTCCCCAGGGGCCTATAAACGTGCACATAGGGTCTAAGTCAGCGAAAAAGATTTGAGGCTCCCGTATAGATAATGGATCCCCTCAGCCCTAGCTGACCGTCATCCGTAACGCCTCCATACATAAATAATTATTTAGCTCTAGTACACCCAGGCGGATCGCTTCTGGTTTTATATTTCTTGATTACTGATGCA ++ +"#')-,;42;7<8544/22.**)-(*()*(')%%&''-*0..+)%%$"'%'*/'%%&$&$%&##$%%(%)%/4)&#&'#$#$#$*#$"#&$$#'&$#*$%&##(&"*%)%&$&&&**(&(%%(%%),-%&%')*/,,(((%$%'$##","#,2''#$$('('*()(+)''&*)%$'(%#&%4.01-17;2&&$'12'')"%)&#$#"$)&'# +@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/2016_3_4_3507_1_ch128_read430_strand.fast5 +GCTTCTTCTGCTTATATTGCTTAGAAGGAAATACGAGAGGAGAAAGAGTAGATGATGATAAAGGGTCGACTAATTATTTCCGAAGTTTGTTAAAGTCGAAATCGCTTCGAATTTGAAATTGTTGCTGACGCAAGTTAGCGATGCGCGATCCCAGGAGTATAGGGGTTGAAAACGGTTCCATTTGATAAGGTTTTCCATTAATGACGTCACGTTGTTTGGTATTTCCTTCTATTTTCTCCGAAGCGCCCCTCTCTCTCTCATCTCACGTCAGATTCAATTTTATTACAACAAATGTGAAAAGTGGGTTCGCAGAGGTCGCTTAAGCCATTTTCTTAGATACAGCTTGAAAACGAATCTACAGAACAAATCTCCTGCCATTACACTCAGAGTCATGACGGTCGTGTTTATAGAGT ++ +))****-+.,,,++,,-,...-*++/,0.1,++,,..-0/)+-/,----,+,,,-,--,-+****+**+**+-.-.0500-.0-,,+*,.,,,,+-*+./.++,.////10+/,/03/10/.0..-*--./0001.--.++../////0--,./0//****.//..--).0-,-*,,+*)10,+-+++,,./+,+++*)+-++++**)))*))*)+*+,*,.0,.+,****,--)))*)()+(*))))))))**,,,,*))((*))**))(*++(+*-,-,())))**+-0-*****./,)****-0/..,-,,.--,-+,****-./680/--*)+000/.//-,/03/..0--.*,++*+*)**)*)*++++.//0/,++**+))*+++*)))**++-,-,3520...**) +@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/2016_3_4_3507_1_ch128_read430_strand.fast5 +ACTCTAACTCAGGCTGGTATCTGAGTGTAATGGCGCAGTTGTCTGTAGGGTCGTTCAAGCTGTATCAAGAAATGAGTAAGCGAAAACCTGCGAGCCGATTTTCGCTTTGTTTAGTAAGGTTAGTGACGTGAGGGTGAGAGAGAGAGAGAGCGTTCGGAGAAAATAGAAGGAGAACCCAAACAACGTGACGTCATTGATGAAAACCTTATCGGGAACCCGTTTCAACCCCTATACTCCTCGGCGCGTAGGCTAACTGCGTAGCAACATTCAATTCAGCAGTTTTCCTGTCAGCGACTTCGGAAGCTTAGTCAACAGTGTTTATCAGCTCCTCTTCCTCTCGTATTTCGTTCAAGCAATATAGCAGAGGCGCCTGTCC ++ +"$###$$$#%#$"###$'###$"&'.)*(*+,-)$%$&/&$1(*),&&%%('$1)%##%%))+((%#$+&*%&&%$%%'(*,--+()$+-+),#*'%')4:*'$$*:,')'#%#%$&%$+++$*%$'&&)&&&&')'+*-,+*'&*$)%'&&'')'*)+,--'&&'$)(2&$)%%&(&&$&%#%%)$%&&((*(+$')(&(%##'+,+,)'((%%$%(*02*')&))+'"%$%%&'$#&%$$(#$&$%%##'&&,*))*((&%#(%*,(*(**$'()%#*=?/-&*)*(##&%'&+,(+*,)%'&*+*+('%($#'#*2+('%$$$&&%#$(+(('''(')'+30,$)*'((*('&&%#$$%%&%''$'$%&&1/$ +@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/2016_3_4_3507_1_ch128_read430_strand.fast5 +CATTCTTTGGTGCTGATCCTGCGAGGAGAGGGGGAGGGGAACAATGGTAGCCACTAAATCTATAACAATTATTTCAGAAGTTGTCCGCTTGAATCATTCATTTGAAATTGTTAGTGACGCAAGTTAATGCGCGATCCCAGGAGCGGGCTCGTCCAGTTTACAATTGTCCATGCGTAGTCAGTTGTTATGTTGATTCCTGTTACCGATAGGGTATATAACGCTCCTAGTCGATTCGATTTGCTTGGCGCCATCCAAGTATTCCAGAGTCCTTAGCATTTTCTTAATGGCACGTGAAAACGAATCCCCTAAGAGCCACTTATCACGTCCGATTACATACTCCAGTCATGACGCTTCTGTTTATGTTTCTTAACCA ++ +##''$%)0%%)$&''',&'(&&$-+*-'('*+(('$$&#'#$%$%##$$#%$$#"$%$'$##$%"%#%)&$,5+($),,*0(&,####&)()(**)+)&$&,$&%1,3-*.''#'#$'('/*)+&&&+$&'%()*((%%)$&$#####"$%3%)')5/($$##&*$0%&()#$%%$$&'%(+%&-)%&%,-##((%$%&)*%&&#%""####"#"$$##""#('#$''$$&)0(&(.//$$&&###%&&+%('&%##%+)&&'%$#&%#%$#"(%/FA/+,(&'##$&%%#(&%*1)*()'())*("#$$(%%(&%*%$$$"$#($%##+$$%$####%$'&((&&$$%$)'1.+*:7,))',7&%)#$#$$# diff -r 000000000000 -r e5072f0d3772 test-data/poretools-hist-out1.pdf Binary file test-data/poretools-hist-out1.pdf has changed diff -r 000000000000 -r e5072f0d3772 test-data/poretools-hist-out1.png Binary file test-data/poretools-hist-out1.png has changed diff -r 000000000000 -r e5072f0d3772 test-data/poretools-hist-out1.svg --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/poretools-hist-out1.svg Tue Dec 19 14:52:30 2017 -0500 @@ -0,0 +1,973 @@ + + + + diff -r 000000000000 -r e5072f0d3772 test-data/poretools-in1.tar.bz2 Binary file test-data/poretools-in1.tar.bz2 has changed diff -r 000000000000 -r e5072f0d3772 test-data/poretools-nucdist-out1.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/poretools-nucdist-out1.tabular Tue Dec 19 14:52:30 2017 -0500 @@ -0,0 +1,4 @@ +A 533 1830 0.291256830601 +C 389 1830 0.212568306011 +T 521 1830 0.284699453552 +G 387 1830 0.211475409836 diff -r 000000000000 -r e5072f0d3772 test-data/poretools-nucdist-out2.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/poretools-nucdist-out2.tabular Tue Dec 19 14:52:30 2017 -0500 @@ -0,0 +1,4 @@ +A 533 1830 0.291256830601 +C 389 1830 0.212568306011 +T 521 1830 0.284699453552 +G 387 1830 0.211475409836 diff -r 000000000000 -r e5072f0d3772 test-data/poretools-occupancy-out1.pdf Binary file test-data/poretools-occupancy-out1.pdf has changed diff -r 000000000000 -r e5072f0d3772 test-data/poretools-occupancy-out1.png Binary file test-data/poretools-occupancy-out1.png has changed diff -r 000000000000 -r e5072f0d3772 test-data/poretools-qualdist-out1.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/poretools-qualdist-out1.tabular Tue Dec 19 14:52:30 2017 -0500 @@ -0,0 +1,16 @@ +( 7 111 1830 0.0606557377049 +) 8 261 1830 0.14262295082 +* 9 333 1830 0.181967213115 ++ 10 307 1830 0.167759562842 +, 11 241 1830 0.131693989071 +- 12 211 1830 0.115300546448 +. 13 154 1830 0.0841530054645 +/ 14 106 1830 0.0579234972678 +0 15 62 1830 0.0338797814208 +1 16 11 1830 0.00601092896175 +2 17 12 1830 0.00655737704918 +3 18 7 1830 0.00382513661202 +4 19 3 1830 0.0016393442623 +5 20 6 1830 0.00327868852459 +6 21 3 1830 0.0016393442623 +8 23 2 1830 0.00109289617486 diff -r 000000000000 -r e5072f0d3772 test-data/poretools-qualdist-out2.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/poretools-qualdist-out2.tabular Tue Dec 19 14:52:30 2017 -0500 @@ -0,0 +1,16 @@ +( 7 111 1830 0.0606557377049 +) 8 261 1830 0.14262295082 +* 9 333 1830 0.181967213115 ++ 10 307 1830 0.167759562842 +, 11 241 1830 0.131693989071 +- 12 211 1830 0.115300546448 +. 13 154 1830 0.0841530054645 +/ 14 106 1830 0.0579234972678 +0 15 62 1830 0.0338797814208 +1 16 11 1830 0.00601092896175 +2 17 12 1830 0.00655737704918 +3 18 7 1830 0.00382513661202 +4 19 3 1830 0.0016393442623 +5 20 6 1830 0.00327868852459 +6 21 3 1830 0.0016393442623 +8 23 2 1830 0.00109289617486 diff -r 000000000000 -r e5072f0d3772 test-data/poretools-qualpos-out1.pdf Binary file test-data/poretools-qualpos-out1.pdf has changed diff -r 000000000000 -r e5072f0d3772 test-data/poretools-qualpos-out1.png Binary file test-data/poretools-qualpos-out1.png has changed diff -r 000000000000 -r e5072f0d3772 test-data/poretools-squiggle-out1-1.pdf Binary file test-data/poretools-squiggle-out1-1.pdf has changed diff -r 000000000000 -r e5072f0d3772 test-data/poretools-squiggle-out1-1.png Binary file test-data/poretools-squiggle-out1-1.png has changed diff -r 000000000000 -r e5072f0d3772 test-data/poretools-squiggle-out1-2.pdf Binary file test-data/poretools-squiggle-out1-2.pdf has changed diff -r 000000000000 -r e5072f0d3772 test-data/poretools-squiggle-out1-2.png Binary file test-data/poretools-squiggle-out1-2.png has changed diff -r 000000000000 -r e5072f0d3772 test-data/poretools-stats-out1.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/poretools-stats-out1.tabular Tue Dec 19 14:52:30 2017 -0500 @@ -0,0 +1,29 @@ +files total reads 4 +files total base-called reads 4 +complement total reads 4 +complement total base pairs 1601 +complement mean 400.25 +complement median 420 +complement min 159 +complement max 602 +complement N25 602 +complement N50 464 +complement N75 376 +template total reads 4 +template total base pairs 1736 +template mean 434.00 +template median 433 +template min 212 +template max 657 +template N25 657 +template N50 494 +template N75 373 +twodirections total reads 4 +twodirections total base pairs 1830 +twodirections mean 457.50 +twodirections median 468 +twodirections min 202 +twodirections max 692 +twodirections N25 692 +twodirections N50 523 +twodirections N75 413 diff -r 000000000000 -r e5072f0d3772 test-data/poretools-stats-out2.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/poretools-stats-out2.tabular Tue Dec 19 14:52:30 2017 -0500 @@ -0,0 +1,9 @@ +total reads 4 +total base pairs 1601 +mean 400.25 +median 420 +min 159 +max 602 +N25 602 +N50 464 +N75 376 diff -r 000000000000 -r e5072f0d3772 test-data/poretools-stats-out3.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/poretools-stats-out3.tabular Tue Dec 19 14:52:30 2017 -0500 @@ -0,0 +1,29 @@ +files total reads 4 +files total base-called reads 4 +complement total reads 4 +complement total base pairs 1601 +complement mean 400.25 +complement median 420 +complement min 159 +complement max 602 +complement N25 602 +complement N50 464 +complement N75 376 +template total reads 4 +template total base pairs 1736 +template mean 434.00 +template median 433 +template min 212 +template max 657 +template N25 657 +template N50 494 +template N75 373 +twodirections total reads 4 +twodirections total base pairs 1830 +twodirections mean 457.50 +twodirections median 468 +twodirections min 202 +twodirections max 692 +twodirections N25 692 +twodirections N50 523 +twodirections N75 413 diff -r 000000000000 -r e5072f0d3772 test-data/poretools-stats-out4.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/poretools-stats-out4.tabular Tue Dec 19 14:52:30 2017 -0500 @@ -0,0 +1,9 @@ +total reads 4 +total base pairs 1830 +mean 457.50 +median 468 +min 202 +max 692 +N25 692 +N50 523 +N75 413 diff -r 000000000000 -r e5072f0d3772 test-data/poretools-stats-out5.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/poretools-stats-out5.tabular Tue Dec 19 14:52:30 2017 -0500 @@ -0,0 +1,29 @@ +files total reads 4 +files total base-called reads 4 +complement total reads 4 +complement total base pairs 1601 +complement mean 400.25 +complement median 420 +complement min 159 +complement max 602 +complement N25 602 +complement N50 464 +complement N75 376 +template total reads 4 +template total base pairs 1736 +template mean 434.00 +template median 433 +template min 212 +template max 657 +template N25 657 +template N50 494 +template N75 373 +twodirections total reads 4 +twodirections total base pairs 1830 +twodirections mean 457.50 +twodirections median 468 +twodirections min 202 +twodirections max 692 +twodirections N25 692 +twodirections N50 523 +twodirections N75 413 diff -r 000000000000 -r e5072f0d3772 test-data/poretools-tabular-out1.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/poretools-tabular-out1.tabular Tue Dec 19 14:52:30 2017 -0500 @@ -0,0 +1,13 @@ +length name sequence quals +202 @b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 GAAATTGCTGGTTGCTCCCCGAGGGGCCTATAAACAATCGGATAAGGGTCTAAGTCAGGGCGAAAAAGATTTGGGGGCTCCTAATCTCCGATAATGAGTGCCGCAACATACGGATAGTACCTTTATGCGTAACCGCTCCATACGACAAATAATTATTTATATACGGTACCTACGGAACCAAAATTGACAAGTTCGTACTTTT )))))+*,,*,*--,-,..---./0..++++-/-//**)*)))*,,.///---**)))*))+/,//-.,00.--)***+*+))),)*)))+).*----.--**..,-,**,**,+++++,+*+*)**+,,,**((+,,+,))()**+,++,+**+--,)(((((()(((((()(())))+,//),+--.+(())(((()((( +159 @b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 ATCGACCATATTGGCTTTTTGGTTATCCTGGTCTACCTCTTGTTGTCTTGGTGGGTGCCAACAGCTATGCATCTGTTGCATCAATCGTGACGGGAAACGAGAGGACAATTTCCCGGGTTAAACATGCCGATTGTCAGCCGCGGGGGCTGGGGAGGTTCC ""$"#$$&%$(&$"#$,<0-+(-'%(#$%$&(&%$$$%'-,(0'$)%(&$"'"#"'"$#$"&#&$##&%$%'%&'00,&'%#$##$$&"####%$'#%(''$$"$"($/=,)''#$$'%%'$'$)$%&$%()''%%"%&%%%(*#(%"$&&(&##&)&$ +212 @b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 CTTCTGTTGTGGTGCTCTTGCTCCCCAGGGGCCTATAAACGTGCACATAGGGTCTAAGTCAGCGAAAAAGATTTGAGGCTCCCGTATAGATAATGGATCCCCTCAGCCCTAGCTGACCGTCATCCGTAACGCCTCCATACATAAATAATTATTTAGCTCTAGTACACCCAGGCGGATCGCTTCTGGTTTTATATTTCTTGATTACTGATGCA "#')-,;42;7<8544/22.**)-(*()*(')%%&''-*0..+)%%$"'%'*/'%%&$&$%&##$%%(%)%/4)&#&'#$#$#$*#$"#&$$#'&$#*$%&##(&"*%)%&$&&&**(&(%%(%%),-%&%')*/,,(((%$%'$##","#,2''#$$('('*()(+)''&*)%$'(%#&%4.01-17;2&&$'12'')"%)&#$#"$)&'# +413 @935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 GCTTCTTCTGCTTATATTGCTTAGAAGGAAATACGAGAGGAGAAAGAGTAGATGATGATAAAGGGTCGACTAATTATTTCCGAAGTTTGTTAAAGTCGAAATCGCTTCGAATTTGAAATTGTTGCTGACGCAAGTTAGCGATGCGCGATCCCAGGAGTATAGGGGTTGAAAACGGTTCCATTTGATAAGGTTTTCCATTAATGACGTCACGTTGTTTGGTATTTCCTTCTATTTTCTCCGAAGCGCCCCTCTCTCTCTCATCTCACGTCAGATTCAATTTTATTACAACAAATGTGAAAAGTGGGTTCGCAGAGGTCGCTTAAGCCATTTTCTTAGATACAGCTTGAAAACGAATCTACAGAACAAATCTCCTGCCATTACACTCAGAGTCATGACGGTCGTGTTTATAGAGT ))****-+.,,,++,,-,...-*++/,0.1,++,,..-0/)+-/,----,+,,,-,--,-+****+**+**+-.-.0500-.0-,,+*,.,,,,+-*+./.++,.////10+/,/03/10/.0..-*--./0001.--.++../////0--,./0//****.//..--).0-,-*,,+*)10,+-+++,,./+,+++*)+-++++**)))*))*)+*+,*,.0,.+,****,--)))*)()+(*))))))))**,,,,*))((*))**))(*++(+*-,-,())))**+-0-*****./,)****-0/..,-,,.--,-+,****-./680/--*)+000/.//-,/03/..0--.*,++*+*)**)*)*++++.//0/,++**+))*+++*)))**++-,-,3520...**) +376 @935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 ACTCTAACTCAGGCTGGTATCTGAGTGTAATGGCGCAGTTGTCTGTAGGGTCGTTCAAGCTGTATCAAGAAATGAGTAAGCGAAAACCTGCGAGCCGATTTTCGCTTTGTTTAGTAAGGTTAGTGACGTGAGGGTGAGAGAGAGAGAGAGCGTTCGGAGAAAATAGAAGGAGAACCCAAACAACGTGACGTCATTGATGAAAACCTTATCGGGAACCCGTTTCAACCCCTATACTCCTCGGCGCGTAGGCTAACTGCGTAGCAACATTCAATTCAGCAGTTTTCCTGTCAGCGACTTCGGAAGCTTAGTCAACAGTGTTTATCAGCTCCTCTTCCTCTCGTATTTCGTTCAAGCAATATAGCAGAGGCGCCTGTCC "$###$$$#%#$"###$'###$"&'.)*(*+,-)$%$&/&$1(*),&&%%('$1)%##%%))+((%#$+&*%&&%$%%'(*,--+()$+-+),#*'%')4:*'$$*:,')'#%#%$&%$+++$*%$'&&)&&&&')'+*-,+*'&*$)%'&&'')'*)+,--'&&'$)(2&$)%%&(&&$&%#%%)$%&&((*(+$')(&(%##'+,+,)'((%%$%(*02*')&))+'"%$%%&'$#&%$$(#$&$%%##'&&,*))*((&%#(%*,(*(**$'()%#*=?/-&*)*(##&%'&+,(+*,)%'&*+*+('%($#'#*2+('%$$$&&%#$(+(('''(')'+30,$)*'((*('&&%#$$%%&%''$'$%&&1/$ +373 @935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 CATTCTTTGGTGCTGATCCTGCGAGGAGAGGGGGAGGGGAACAATGGTAGCCACTAAATCTATAACAATTATTTCAGAAGTTGTCCGCTTGAATCATTCATTTGAAATTGTTAGTGACGCAAGTTAATGCGCGATCCCAGGAGCGGGCTCGTCCAGTTTACAATTGTCCATGCGTAGTCAGTTGTTATGTTGATTCCTGTTACCGATAGGGTATATAACGCTCCTAGTCGATTCGATTTGCTTGGCGCCATCCAAGTATTCCAGAGTCCTTAGCATTTTCTTAATGGCACGTGAAAACGAATCCCCTAAGAGCCACTTATCACGTCCGATTACATACTCCAGTCATGACGCTTCTGTTTATGTTTCTTAACCA ##''$%)0%%)$&''',&'(&&$-+*-'('*+(('$$&#'#$%$%##$$#%$$#"$%$'$##$%"%#%)&$,5+($),,*0(&,####&)()(**)+)&$&,$&%1,3-*.''#'#$'('/*)+&&&+$&'%()*((%%)$&$#####"$%3%)')5/($$##&*$0%&()#$%%$$&'%(+%&-)%&%,-##((%$%&)*%&&#%""####"#"$$##""#('#$''$$&)0(&(.//$$&&###%&&+%('&%##%+)&&'%$#&%#%$#"(%/FA/+,(&'##$&%%#(&%*1)*()'())*("#$$(%%(&%*%$$$"$#($%##+$$%$####%$'&((&&$$%$)'1.+*:7,))',7&%)#$#$$# +523 @e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 ATGTTTCTTCAGTGATACCTGTGACATCCGGAAAGGAGGAGGAGGATCAGAAAGGAGGAGTGTGACATAACGCTGACAGTGCGTGCTTAGGTTCGTTAATAAACAAAGCCATATTACGGAGATGGCGTAATCACCTACGATGAAAGTGGTCACGTACGCGTGCCACCTGGGCATCGTCCTCACCCCTTCATTAAATTACAGGCTTTTGACTCCTTCAACCTTCTCGTTGTAATTGGTTAGTACTTATCCTATCTTATTCGCGATCGGCGTTCGATTGGATTTCGCTTCGAATGTAATCCGTATGCGCAATACAAATATTTGAGCTAATTTCCTCTCTTTACGTAATCGTTTTCGTCACCGTCGTCAATTATCGATACGGGAATCAAGTCGAACGAACCCCTGACCGAGAATCAGAAAAACTTTCAGAAGAAAAAGGAAGAAGAGAAAGCTCTTTCACATTGTAAACCAAACGCGAAAGCTCCCGAAAACAAAGGGCGGCGATTCTAAACATTTGGTTTATGTT (((*-,+,,,++*()(())*-)),....+/-,.),-++--./-,))*()))+*+*)*-*,**)())((*)(*()(*--+**)()()*(())))*,--*,+,.,---+)+))()**((())*+,-/./,--,++****+,+,,-02.///..-.--...,,))))))*++,+*++,+++*)*++-+*+**)+++**+)))(((())+*()((()(()))))))((((),-./--+*)))((((()((((((*+,,+,*+*,++++****,1.+*++,+,-.2-,+,-,+*,*.-.1/----*+,*+**++***./.-+*-+))))*,,-/*-*****-,*))))**,+++-,++++*+*,-../.-,**)*)+******-+,+)*++*+-.//../..,,+,..+.)+-+,))*+*++,+*,----.//-0662.-,--.-0.../.,+))-,2/.-++*****+**++++-+-...+,+*****,,.,+*.+,,,++*)))+/.,-10,+***)**++***+* +464 @e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 GAACACAACTGTTTCCCAGTACACGCTTTGTTTAAGCTTTCGCGTTGGTTCCATGTGAAGAGCTTCTGTTCTTCCTTTTTTGGTATGAAAGTTTTAGTTCTCTTCAGAGTCGTCCCACTTGATGTCCCGTATCGCTTGTGGACATTGTAGAAATGATCGTAAGGGCAGAGGAATTAATTAAAACTTTGTGGTGCCATCCCATTACGGTCGAGCGAATCCAGTAGCACCAGTACCCAGTAAGAACGAACCCTGAGCCAATTACACAGAAGGTTGAAGGAGTCAAGCTGTAGTTGGAAGGGGTGAAGGTCCGCACAAGATTCGATCCTCGTTATCGTACCTGATTACACATCTCTGCGTGATATGATGATTCTTTATTAGCAACCGAGCACGCACTGTTGGCGTTATGTTCGGATACTACGGTCTATCCTCTCAAACGGTCCAGCTCCCAACATCGGCGTCAGTCA #"#$"$%%#$#*3.$%&%$(#$%#$#'-,(4*$#$$%(2+'&%%*.%%,:'%&,)*,'%(%%$*,'''(*(%,'%)2>B>/'#$$&&$)+%/;,&#$()'&'&&($%#$(&&*&$$$#%%$$'&)+%&$)#%$##%'%&%#$$#&-%##&$&$#$#%$$$%&##&$$$&,-('(###'$')'#$+14(&$$($%$%#$&#'*+)*%)+$$&%$'&&(%&&%)"%$$'&%#)#%'#'$'%'(%&%%&%&%#$###&#&'+&####$($$$#'*)(+,-*$)&&'$&%$$$$((%+'&&$%#''$$$#&$%%$#$$$,%(*&"#&###(&*$%%%$&#$$%$&)+()$(&'$%$$##$)"&$#$##$&#&.#&1)&(%%'%&#'%#&&&%$&%$%(',('('&)+&%%-&#"$#%$%$$'$$,)(),'%%$$$###'##*((%(%%'%#$##"%##$(*-)&'&%# +494 @e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 TTGTGTTTCTTCTTATGACTTGCTATGCGCAGGGGGGAGGAGAGATGTAGCGGAGGGCAGAGTGTGAAAGGGGTAGTTCATTATGCTGTCGTTAAGCCTCCGGGGCTATTGAAAACGATGAATGGGGCCAGGCGCTGGTCACGTACACGTGCGACACTGATGAAACGTTCCTCACCATTCATTAAATTACCGGCTTTTAAACGTGAACATGCTGTTGTAATTCTTCATGGTGGTGTAATGTACTTAGCAGTAGCGTTCAATTGGATTTCGCTTCGAATGTAGTCGATCTGCGCATCCACTGGTCGACGATTTCCTCTCTTTACTGATCGTAGTTCGTCACGTCGTCGTACGATAGGATCAAAGTCGCGGGATGGCTATCCCCGGGCGAACTTTCCAGAGAAGGAAGAAGAAAGACCTTTCGGCTTGTAGTAAGACCCCGAAGACTCGAAAACAGGGCAACGCGAATTCCACTTCGTTATGTTCTTACTATTGGA #$$*)*8+$()&(%%$#$#&'$#"%%#$($+&,&(-(',.,*%$%%$$$"$$('%%'&('%%%%%$##$#$$"$#$%&%$&$#'$$#$)''+&$%"&##($#$$###$*&*$&(%%$&($&$&"###%$$#&"#!%$$($$%$'$&%&'*%&$#$#$%$$$($/$/.2)'$#%#%(#**)%)&'$#)%#%''(%')0'$%#$$'$&#$#&$&$&,2-,/%1,"%*%%$#%&##%%&)((('&%(&&%'*%&'$((-:'%(**)((/5)%$&,,*%)#'%$$#&$"#'$)$&%%%#$$%#$#"'$"#$"$17)&##%&')3'##$$$$$#%#%+)'&)&#+*,)&'%%&#%#%#$*%&%$%%##&&#%%'#'#$$%##$%)$'%%'%#'$#)48$$#%#'#*)-,,))')((%#$#&&-'(##'%*%$&"""$#$#')%$'($$#"'$&&)$&'%(*&%%'$$)+)6*(#%#%'%&*,)(&3*$%'$%%$(,,&# +692 @2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 CATGTTTCTGCTGATATTGCTAATGGCTGAACTGGAAATAAGGATCCGTTGCTTGCCAACAACTATACTGCGTGGTATTTTCCCAGTGGAAAGATCGGGAACCTTTGATCTTCAATATAGTTACAATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTTGGGTATAACAGGATGAGGAGGACGATTCGAAGTCACGATCATGCGCCCAAGTCAGAATGACTCCACACTACTCCTCCTCAGGACCATTTATAAATAAACAGTGATCAAGATTCCAACAATTAAGATGGCTTGAAACCAATTTCTGCTCTTGTTTTTGTTCCCACTCCCCCCTCCCCCCGAGGTCAGGATGAAGTATTAACTCTGAAGATAAAGGACCCCACGACGACAACGGCTTCCAGTTACTTCGAAGGCATTTTTCTACTTCTACTTCCCCTCCGTCTCATCCTCCTCCTCAGCTACCAAATTCACAATAGGACCGCAGGAAAAGTCTGTAGCGAATAGAACCTTCTTCACTACGGTTTCGTACCTAAAATGTTCTGGAAAAATGGATAGAAAAGAATCTTTTAAAATCGAAATCCGATTTTCGGAGTGTTAACAATGTAACTGTTGTAGAAAAGGAGCGGTAAATGAGACGTGGGGAATAAGATACAGAGCAACCACTGTCGTTAAGGACCGTTTGAGTGTTT ))))+-*)*)+**++**+)*)*,-,,+++-+++/./20.//.+...*.,-,--+***,+++++**+++,.//.,++,.54.320/--.,-.++-.,,.-++++*,+,-./0/.0000/..0-,----/.----,+++++,00.//./.++*+//0.//00/285/+*+**+-,,,,,-,**,,,+--00*0/)*.,+,+.,,,+++,,-+*,*+-+,+,--..,+****)**+++,+++***)*+)**)-,.20//02-))**++*+**+*+**-/0./-,,,--))*))++)+*++..,,+-./.+++++,++++,025-,5.-/,-//0/---,,.43430,,-+,+,.,/..-.+***)))))..//-+,***)))+)++))),***)**))(())--.-())((,((*(*(((*+-0/---,*/**)*,-/.0.-,.,++)*,+,,-,--,-,+++**))**,+*+*))))*))))*))+(+,-+,**)))*)*)))*++((*+****,,,---+*,+*+,0,++*)))(,03.--1+***-*-)*)+****))))+))+***+21--/.-)))**)*)***-10--,-,,+*+)))+,..,,/,,,,-,+)())***)())*++++,+)))***+*))((,+(((())(*)()()***,,---,,,+)((((,()**.*(***+))) +602 @2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 ACACTAGCATCTGTCTGGCCCCGATATTTGTAGTATGTACTTTACGTGTACTGTTACTATGGTATTTTCACCCTCAGTTTGCCCTTGTCACTCGAAAGTCGAATTCAGTGTTTTAAAAGATTGTCTGGTTCTATCGGTTCCGAGCAGTTTTAATAGAACTGATCAATGAAGAAGGTTCGTTCGAGCGAACTTCCAGTGATCTTGTGAATTTGAGCTGAGGAGGAGATGAAAGAGGGAAGTAGAAGTAGAAAAATTGCATCGAAATATGGAATAAATTGTATCGTCGGTCTTGCTTTTATCTGTCAGTTATACTTCAGTAGGAGGGAGTGGGATAACGACAGCAATTAGTTCAGCCTTAGTGTTGAGGAATCTGGTTCTTTAACATCTTTGGTGGGAGGAGTGTCCTTGATTTAATATGCAGAAGTATCCTTGCTGCGAATCGTCATCATCCTTTAACAATAGGATGAAAACCGTTAAAATGCCGACAGTTGGACCTGCGAGCCGCCGGCCCGTATTCATGGGAAAGTACCGCATTAACGTGTGTCAGGCGGGACGTATTATTTCCCGTTCAGCCGATTAAGTATACAGGCACAGAGACTTCC ####"##&%##$#+%%##%#'%#$%$)-)'($%&&((,()+-'&'(($%#(&%1-$##$'$#%#'08+'$$%#"&$#&.+$%*#('%%##$$&&)))$(''($(('##+)6<4)'(*()',,(.'&%&'*($%&%##-,('#$$"$$'04)&%$#('&%%%%'$##(%%$*$'$#'''&),%$%$%$%$$$*+%$%(%%&&''%%(&%1-(%$"#%&&+**-,'&''((&#'#$&%'&%'#(&+#)*))//+&&%$%$%$%&)&&$),-*&%$$$&)%$#$'&+(#%'&''$##(2(%&$%$..('($&%%*.+'$%%%),')'()%*'&)%#&##"###&%%%'*$'++($$%#'%%"($)&#$%''&(**)$+*&)3-&%$$$#$)&$%'%)*')&&$%%&$#&($#+0&$"##%###'%(%'&(%$%(%#&$%$&$&$#%###$$&$%&+&&$$%&$$'('&(&&&#%$$'%%&'%'"%###$$#-)%#$#%'%%$&'''"&%$$'%$$)#(-*&)+09))'#'#%&%&$$(&%%%)(+()&%$('"""$"#&#'$$'./(*&&('%$#$$##'%$&$&%$"&"))##$#'$##"$)'$ +657 @2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 GTATTTCTTATGATATTAGATGTAGGCTGGAAATAGAATGCGTGCTTTACAGGCCTCCTCTGCGTATGTTTCCATGGAAGCCGTAGGAACCTTTGATCTTCATACTTGCCCTATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTGATATAACAGGATACGGAAAGAGTTCGAAGTCGAATCGTCCAGCAAGTCGAATGACTCTAAAGACATCGGCACGGCCTTTGAGGCTCGTATATGCCTAATTCCAACAATGCAAAGTACGTGGAACAGATTTCTGCTCTTTTTTGTTCCACTCCGCCAGCCCCCCGAGGTCAGGATGAAATATTACTCTGAAAACCGCCAACCCACGGGACAGCTACGTCGAATGTCGTCGAACAGTTCTATTCCTTCCCCTCCGTTAGTACTACTCTAGGCTACTCAATTCAGGCGATAGAAGGAAAAGTCTGTACCAGGCGGGTTCTTCGGCTTTTCAATGCGCGCTGTTCTGGGGAGCTATCGCTGCAAAGAATCTTTTAAAATCGAGTCGAGTTTTCAGAGTGTTCCTCAATGTAACTGTTGGCAAAGGAGCGGGCCTGGCAGACGTGGGGAATAAGACCCCAAAACCACTTCGTGCACATCGTTCTGGTGTTCATCTGTTCTTAGCTCTTGT "##)7.'-(&&$$&#'$$$''%$%$&(),210)&&)&)+&.-+'((,%#))())&%)(')+)*+.***CC/&'$'')(*###$&%)5)1')&./%%)%++)&%$%%.#''(#%*)+&&).*)'*%$+A/'&%+%)''-;+)-'++-1)9>0()((%&%&&(')%$%#+-/&'#%+3&**/&''&'%'%$($%&$'(&'(&)*++)('&'#$$#"#"#%'$&%#$#")$&.'#&$%$$$$($&#)#%$#%,10*)%$&$,)&'"%#"%$&%1&')&%%%'-A:10/,+(*0KLI,,I330,**.,$&$'&,7255.)+(%'&&+$,%%%'$$$&&%$$&''$*)$$%#%$&$'%#$$$#"##$$%$$(#*'#$&%#&$#$$$(%&%'1)'%$/,(')3+0-,,1*)0$##'#$%$&&(#$$##"#$#'&$,(&&#$%$&$$)&+,++**(%+'&&%$$$%"$"#%$,5')(''&',:M/($&,&($%$$((7,&%%--$&$##$%$$%))$+*',.--+-3/'$')%&##&$*($''-3E3)$)'&('&)#&&())+)))('(&/*))',-&0**('&%#$##$)#'&+,,(&&&%)'%%$%&&*+&%$%"#$$$%)(()%&"#&#)&1.+,**++-C$&$$&$4(%)$$##$#$&$% diff -r 000000000000 -r e5072f0d3772 test-data/poretools-tabular-out2.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/poretools-tabular-out2.tabular Tue Dec 19 14:52:30 2017 -0500 @@ -0,0 +1,13 @@ +length name sequence quals +202 @b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 GAAATTGCTGGTTGCTCCCCGAGGGGCCTATAAACAATCGGATAAGGGTCTAAGTCAGGGCGAAAAAGATTTGGGGGCTCCTAATCTCCGATAATGAGTGCCGCAACATACGGATAGTACCTTTATGCGTAACCGCTCCATACGACAAATAATTATTTATATACGGTACCTACGGAACCAAAATTGACAAGTTCGTACTTTT )))))+*,,*,*--,-,..---./0..++++-/-//**)*)))*,,.///---**)))*))+/,//-.,00.--)***+*+))),)*)))+).*----.--**..,-,**,**,+++++,+*+*)**+,,,**((+,,+,))()**+,++,+**+--,)(((((()(((((()(())))+,//),+--.+(())(((()((( +159 @b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 ATCGACCATATTGGCTTTTTGGTTATCCTGGTCTACCTCTTGTTGTCTTGGTGGGTGCCAACAGCTATGCATCTGTTGCATCAATCGTGACGGGAAACGAGAGGACAATTTCCCGGGTTAAACATGCCGATTGTCAGCCGCGGGGGCTGGGGAGGTTCC ""$"#$$&%$(&$"#$,<0-+(-'%(#$%$&(&%$$$%'-,(0'$)%(&$"'"#"'"$#$"&#&$##&%$%'%&'00,&'%#$##$$&"####%$'#%(''$$"$"($/=,)''#$$'%%'$'$)$%&$%()''%%"%&%%%(*#(%"$&&(&##&)&$ +212 @b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 CTTCTGTTGTGGTGCTCTTGCTCCCCAGGGGCCTATAAACGTGCACATAGGGTCTAAGTCAGCGAAAAAGATTTGAGGCTCCCGTATAGATAATGGATCCCCTCAGCCCTAGCTGACCGTCATCCGTAACGCCTCCATACATAAATAATTATTTAGCTCTAGTACACCCAGGCGGATCGCTTCTGGTTTTATATTTCTTGATTACTGATGCA "#')-,;42;7<8544/22.**)-(*()*(')%%&''-*0..+)%%$"'%'*/'%%&$&$%&##$%%(%)%/4)&#&'#$#$#$*#$"#&$$#'&$#*$%&##(&"*%)%&$&&&**(&(%%(%%),-%&%')*/,,(((%$%'$##","#,2''#$$('('*()(+)''&*)%$'(%#&%4.01-17;2&&$'12'')"%)&#$#"$)&'# +413 @935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 GCTTCTTCTGCTTATATTGCTTAGAAGGAAATACGAGAGGAGAAAGAGTAGATGATGATAAAGGGTCGACTAATTATTTCCGAAGTTTGTTAAAGTCGAAATCGCTTCGAATTTGAAATTGTTGCTGACGCAAGTTAGCGATGCGCGATCCCAGGAGTATAGGGGTTGAAAACGGTTCCATTTGATAAGGTTTTCCATTAATGACGTCACGTTGTTTGGTATTTCCTTCTATTTTCTCCGAAGCGCCCCTCTCTCTCTCATCTCACGTCAGATTCAATTTTATTACAACAAATGTGAAAAGTGGGTTCGCAGAGGTCGCTTAAGCCATTTTCTTAGATACAGCTTGAAAACGAATCTACAGAACAAATCTCCTGCCATTACACTCAGAGTCATGACGGTCGTGTTTATAGAGT ))****-+.,,,++,,-,...-*++/,0.1,++,,..-0/)+-/,----,+,,,-,--,-+****+**+**+-.-.0500-.0-,,+*,.,,,,+-*+./.++,.////10+/,/03/10/.0..-*--./0001.--.++../////0--,./0//****.//..--).0-,-*,,+*)10,+-+++,,./+,+++*)+-++++**)))*))*)+*+,*,.0,.+,****,--)))*)()+(*))))))))**,,,,*))((*))**))(*++(+*-,-,())))**+-0-*****./,)****-0/..,-,,.--,-+,****-./680/--*)+000/.//-,/03/..0--.*,++*+*)**)*)*++++.//0/,++**+))*+++*)))**++-,-,3520...**) +376 @935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 ACTCTAACTCAGGCTGGTATCTGAGTGTAATGGCGCAGTTGTCTGTAGGGTCGTTCAAGCTGTATCAAGAAATGAGTAAGCGAAAACCTGCGAGCCGATTTTCGCTTTGTTTAGTAAGGTTAGTGACGTGAGGGTGAGAGAGAGAGAGAGCGTTCGGAGAAAATAGAAGGAGAACCCAAACAACGTGACGTCATTGATGAAAACCTTATCGGGAACCCGTTTCAACCCCTATACTCCTCGGCGCGTAGGCTAACTGCGTAGCAACATTCAATTCAGCAGTTTTCCTGTCAGCGACTTCGGAAGCTTAGTCAACAGTGTTTATCAGCTCCTCTTCCTCTCGTATTTCGTTCAAGCAATATAGCAGAGGCGCCTGTCC "$###$$$#%#$"###$'###$"&'.)*(*+,-)$%$&/&$1(*),&&%%('$1)%##%%))+((%#$+&*%&&%$%%'(*,--+()$+-+),#*'%')4:*'$$*:,')'#%#%$&%$+++$*%$'&&)&&&&')'+*-,+*'&*$)%'&&'')'*)+,--'&&'$)(2&$)%%&(&&$&%#%%)$%&&((*(+$')(&(%##'+,+,)'((%%$%(*02*')&))+'"%$%%&'$#&%$$(#$&$%%##'&&,*))*((&%#(%*,(*(**$'()%#*=?/-&*)*(##&%'&+,(+*,)%'&*+*+('%($#'#*2+('%$$$&&%#$(+(('''(')'+30,$)*'((*('&&%#$$%%&%''$'$%&&1/$ +373 @935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 CATTCTTTGGTGCTGATCCTGCGAGGAGAGGGGGAGGGGAACAATGGTAGCCACTAAATCTATAACAATTATTTCAGAAGTTGTCCGCTTGAATCATTCATTTGAAATTGTTAGTGACGCAAGTTAATGCGCGATCCCAGGAGCGGGCTCGTCCAGTTTACAATTGTCCATGCGTAGTCAGTTGTTATGTTGATTCCTGTTACCGATAGGGTATATAACGCTCCTAGTCGATTCGATTTGCTTGGCGCCATCCAAGTATTCCAGAGTCCTTAGCATTTTCTTAATGGCACGTGAAAACGAATCCCCTAAGAGCCACTTATCACGTCCGATTACATACTCCAGTCATGACGCTTCTGTTTATGTTTCTTAACCA ##''$%)0%%)$&''',&'(&&$-+*-'('*+(('$$&#'#$%$%##$$#%$$#"$%$'$##$%"%#%)&$,5+($),,*0(&,####&)()(**)+)&$&,$&%1,3-*.''#'#$'('/*)+&&&+$&'%()*((%%)$&$#####"$%3%)')5/($$##&*$0%&()#$%%$$&'%(+%&-)%&%,-##((%$%&)*%&&#%""####"#"$$##""#('#$''$$&)0(&(.//$$&&###%&&+%('&%##%+)&&'%$#&%#%$#"(%/FA/+,(&'##$&%%#(&%*1)*()'())*("#$$(%%(&%*%$$$"$#($%##+$$%$####%$'&((&&$$%$)'1.+*:7,))',7&%)#$#$$# +523 @e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 ATGTTTCTTCAGTGATACCTGTGACATCCGGAAAGGAGGAGGAGGATCAGAAAGGAGGAGTGTGACATAACGCTGACAGTGCGTGCTTAGGTTCGTTAATAAACAAAGCCATATTACGGAGATGGCGTAATCACCTACGATGAAAGTGGTCACGTACGCGTGCCACCTGGGCATCGTCCTCACCCCTTCATTAAATTACAGGCTTTTGACTCCTTCAACCTTCTCGTTGTAATTGGTTAGTACTTATCCTATCTTATTCGCGATCGGCGTTCGATTGGATTTCGCTTCGAATGTAATCCGTATGCGCAATACAAATATTTGAGCTAATTTCCTCTCTTTACGTAATCGTTTTCGTCACCGTCGTCAATTATCGATACGGGAATCAAGTCGAACGAACCCCTGACCGAGAATCAGAAAAACTTTCAGAAGAAAAAGGAAGAAGAGAAAGCTCTTTCACATTGTAAACCAAACGCGAAAGCTCCCGAAAACAAAGGGCGGCGATTCTAAACATTTGGTTTATGTT (((*-,+,,,++*()(())*-)),....+/-,.),-++--./-,))*()))+*+*)*-*,**)())((*)(*()(*--+**)()()*(())))*,--*,+,.,---+)+))()**((())*+,-/./,--,++****+,+,,-02.///..-.--...,,))))))*++,+*++,+++*)*++-+*+**)+++**+)))(((())+*()((()(()))))))((((),-./--+*)))((((()((((((*+,,+,*+*,++++****,1.+*++,+,-.2-,+,-,+*,*.-.1/----*+,*+**++***./.-+*-+))))*,,-/*-*****-,*))))**,+++-,++++*+*,-../.-,**)*)+******-+,+)*++*+-.//../..,,+,..+.)+-+,))*+*++,+*,----.//-0662.-,--.-0.../.,+))-,2/.-++*****+**++++-+-...+,+*****,,.,+*.+,,,++*)))+/.,-10,+***)**++***+* +464 @e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 GAACACAACTGTTTCCCAGTACACGCTTTGTTTAAGCTTTCGCGTTGGTTCCATGTGAAGAGCTTCTGTTCTTCCTTTTTTGGTATGAAAGTTTTAGTTCTCTTCAGAGTCGTCCCACTTGATGTCCCGTATCGCTTGTGGACATTGTAGAAATGATCGTAAGGGCAGAGGAATTAATTAAAACTTTGTGGTGCCATCCCATTACGGTCGAGCGAATCCAGTAGCACCAGTACCCAGTAAGAACGAACCCTGAGCCAATTACACAGAAGGTTGAAGGAGTCAAGCTGTAGTTGGAAGGGGTGAAGGTCCGCACAAGATTCGATCCTCGTTATCGTACCTGATTACACATCTCTGCGTGATATGATGATTCTTTATTAGCAACCGAGCACGCACTGTTGGCGTTATGTTCGGATACTACGGTCTATCCTCTCAAACGGTCCAGCTCCCAACATCGGCGTCAGTCA #"#$"$%%#$#*3.$%&%$(#$%#$#'-,(4*$#$$%(2+'&%%*.%%,:'%&,)*,'%(%%$*,'''(*(%,'%)2>B>/'#$$&&$)+%/;,&#$()'&'&&($%#$(&&*&$$$#%%$$'&)+%&$)#%$##%'%&%#$$#&-%##&$&$#$#%$$$%&##&$$$&,-('(###'$')'#$+14(&$$($%$%#$&#'*+)*%)+$$&%$'&&(%&&%)"%$$'&%#)#%'#'$'%'(%&%%&%&%#$###&#&'+&####$($$$#'*)(+,-*$)&&'$&%$$$$((%+'&&$%#''$$$#&$%%$#$$$,%(*&"#&###(&*$%%%$&#$$%$&)+()$(&'$%$$##$)"&$#$##$&#&.#&1)&(%%'%&#'%#&&&%$&%$%(',('('&)+&%%-&#"$#%$%$$'$$,)(),'%%$$$###'##*((%(%%'%#$##"%##$(*-)&'&%# +494 @e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 TTGTGTTTCTTCTTATGACTTGCTATGCGCAGGGGGGAGGAGAGATGTAGCGGAGGGCAGAGTGTGAAAGGGGTAGTTCATTATGCTGTCGTTAAGCCTCCGGGGCTATTGAAAACGATGAATGGGGCCAGGCGCTGGTCACGTACACGTGCGACACTGATGAAACGTTCCTCACCATTCATTAAATTACCGGCTTTTAAACGTGAACATGCTGTTGTAATTCTTCATGGTGGTGTAATGTACTTAGCAGTAGCGTTCAATTGGATTTCGCTTCGAATGTAGTCGATCTGCGCATCCACTGGTCGACGATTTCCTCTCTTTACTGATCGTAGTTCGTCACGTCGTCGTACGATAGGATCAAAGTCGCGGGATGGCTATCCCCGGGCGAACTTTCCAGAGAAGGAAGAAGAAAGACCTTTCGGCTTGTAGTAAGACCCCGAAGACTCGAAAACAGGGCAACGCGAATTCCACTTCGTTATGTTCTTACTATTGGA #$$*)*8+$()&(%%$#$#&'$#"%%#$($+&,&(-(',.,*%$%%$$$"$$('%%'&('%%%%%$##$#$$"$#$%&%$&$#'$$#$)''+&$%"&##($#$$###$*&*$&(%%$&($&$&"###%$$#&"#!%$$($$%$'$&%&'*%&$#$#$%$$$($/$/.2)'$#%#%(#**)%)&'$#)%#%''(%')0'$%#$$'$&#$#&$&$&,2-,/%1,"%*%%$#%&##%%&)((('&%(&&%'*%&'$((-:'%(**)((/5)%$&,,*%)#'%$$#&$"#'$)$&%%%#$$%#$#"'$"#$"$17)&##%&')3'##$$$$$#%#%+)'&)&#+*,)&'%%&#%#%#$*%&%$%%##&&#%%'#'#$$%##$%)$'%%'%#'$#)48$$#%#'#*)-,,))')((%#$#&&-'(##'%*%$&"""$#$#')%$'($$#"'$&&)$&'%(*&%%'$$)+)6*(#%#%'%&*,)(&3*$%'$%%$(,,&# +692 @2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 CATGTTTCTGCTGATATTGCTAATGGCTGAACTGGAAATAAGGATCCGTTGCTTGCCAACAACTATACTGCGTGGTATTTTCCCAGTGGAAAGATCGGGAACCTTTGATCTTCAATATAGTTACAATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTTGGGTATAACAGGATGAGGAGGACGATTCGAAGTCACGATCATGCGCCCAAGTCAGAATGACTCCACACTACTCCTCCTCAGGACCATTTATAAATAAACAGTGATCAAGATTCCAACAATTAAGATGGCTTGAAACCAATTTCTGCTCTTGTTTTTGTTCCCACTCCCCCCTCCCCCCGAGGTCAGGATGAAGTATTAACTCTGAAGATAAAGGACCCCACGACGACAACGGCTTCCAGTTACTTCGAAGGCATTTTTCTACTTCTACTTCCCCTCCGTCTCATCCTCCTCCTCAGCTACCAAATTCACAATAGGACCGCAGGAAAAGTCTGTAGCGAATAGAACCTTCTTCACTACGGTTTCGTACCTAAAATGTTCTGGAAAAATGGATAGAAAAGAATCTTTTAAAATCGAAATCCGATTTTCGGAGTGTTAACAATGTAACTGTTGTAGAAAAGGAGCGGTAAATGAGACGTGGGGAATAAGATACAGAGCAACCACTGTCGTTAAGGACCGTTTGAGTGTTT ))))+-*)*)+**++**+)*)*,-,,+++-+++/./20.//.+...*.,-,--+***,+++++**+++,.//.,++,.54.320/--.,-.++-.,,.-++++*,+,-./0/.0000/..0-,----/.----,+++++,00.//./.++*+//0.//00/285/+*+**+-,,,,,-,**,,,+--00*0/)*.,+,+.,,,+++,,-+*,*+-+,+,--..,+****)**+++,+++***)*+)**)-,.20//02-))**++*+**+*+**-/0./-,,,--))*))++)+*++..,,+-./.+++++,++++,025-,5.-/,-//0/---,,.43430,,-+,+,.,/..-.+***)))))..//-+,***)))+)++))),***)**))(())--.-())((,((*(*(((*+-0/---,*/**)*,-/.0.-,.,++)*,+,,-,--,-,+++**))**,+*+*))))*))))*))+(+,-+,**)))*)*)))*++((*+****,,,---+*,+*+,0,++*)))(,03.--1+***-*-)*)+****))))+))+***+21--/.-)))**)*)***-10--,-,,+*+)))+,..,,/,,,,-,+)())***)())*++++,+)))***+*))((,+(((())(*)()()***,,---,,,+)((((,()**.*(***+))) +602 @2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 ACACTAGCATCTGTCTGGCCCCGATATTTGTAGTATGTACTTTACGTGTACTGTTACTATGGTATTTTCACCCTCAGTTTGCCCTTGTCACTCGAAAGTCGAATTCAGTGTTTTAAAAGATTGTCTGGTTCTATCGGTTCCGAGCAGTTTTAATAGAACTGATCAATGAAGAAGGTTCGTTCGAGCGAACTTCCAGTGATCTTGTGAATTTGAGCTGAGGAGGAGATGAAAGAGGGAAGTAGAAGTAGAAAAATTGCATCGAAATATGGAATAAATTGTATCGTCGGTCTTGCTTTTATCTGTCAGTTATACTTCAGTAGGAGGGAGTGGGATAACGACAGCAATTAGTTCAGCCTTAGTGTTGAGGAATCTGGTTCTTTAACATCTTTGGTGGGAGGAGTGTCCTTGATTTAATATGCAGAAGTATCCTTGCTGCGAATCGTCATCATCCTTTAACAATAGGATGAAAACCGTTAAAATGCCGACAGTTGGACCTGCGAGCCGCCGGCCCGTATTCATGGGAAAGTACCGCATTAACGTGTGTCAGGCGGGACGTATTATTTCCCGTTCAGCCGATTAAGTATACAGGCACAGAGACTTCC ####"##&%##$#+%%##%#'%#$%$)-)'($%&&((,()+-'&'(($%#(&%1-$##$'$#%#'08+'$$%#"&$#&.+$%*#('%%##$$&&)))$(''($(('##+)6<4)'(*()',,(.'&%&'*($%&%##-,('#$$"$$'04)&%$#('&%%%%'$##(%%$*$'$#'''&),%$%$%$%$$$*+%$%(%%&&''%%(&%1-(%$"#%&&+**-,'&''((&#'#$&%'&%'#(&+#)*))//+&&%$%$%$%&)&&$),-*&%$$$&)%$#$'&+(#%'&''$##(2(%&$%$..('($&%%*.+'$%%%),')'()%*'&)%#&##"###&%%%'*$'++($$%#'%%"($)&#$%''&(**)$+*&)3-&%$$$#$)&$%'%)*')&&$%%&$#&($#+0&$"##%###'%(%'&(%$%(%#&$%$&$&$#%###$$&$%&+&&$$%&$$'('&(&&&#%$$'%%&'%'"%###$$#-)%#$#%'%%$&'''"&%$$'%$$)#(-*&)+09))'#'#%&%&$$(&%%%)(+()&%$('"""$"#&#'$$'./(*&&('%$#$$##'%$&$&%$"&"))##$#'$##"$)'$ +657 @2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 GTATTTCTTATGATATTAGATGTAGGCTGGAAATAGAATGCGTGCTTTACAGGCCTCCTCTGCGTATGTTTCCATGGAAGCCGTAGGAACCTTTGATCTTCATACTTGCCCTATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTGATATAACAGGATACGGAAAGAGTTCGAAGTCGAATCGTCCAGCAAGTCGAATGACTCTAAAGACATCGGCACGGCCTTTGAGGCTCGTATATGCCTAATTCCAACAATGCAAAGTACGTGGAACAGATTTCTGCTCTTTTTTGTTCCACTCCGCCAGCCCCCCGAGGTCAGGATGAAATATTACTCTGAAAACCGCCAACCCACGGGACAGCTACGTCGAATGTCGTCGAACAGTTCTATTCCTTCCCCTCCGTTAGTACTACTCTAGGCTACTCAATTCAGGCGATAGAAGGAAAAGTCTGTACCAGGCGGGTTCTTCGGCTTTTCAATGCGCGCTGTTCTGGGGAGCTATCGCTGCAAAGAATCTTTTAAAATCGAGTCGAGTTTTCAGAGTGTTCCTCAATGTAACTGTTGGCAAAGGAGCGGGCCTGGCAGACGTGGGGAATAAGACCCCAAAACCACTTCGTGCACATCGTTCTGGTGTTCATCTGTTCTTAGCTCTTGT "##)7.'-(&&$$&#'$$$''%$%$&(),210)&&)&)+&.-+'((,%#))())&%)(')+)*+.***CC/&'$'')(*###$&%)5)1')&./%%)%++)&%$%%.#''(#%*)+&&).*)'*%$+A/'&%+%)''-;+)-'++-1)9>0()((%&%&&(')%$%#+-/&'#%+3&**/&''&'%'%$($%&$'(&'(&)*++)('&'#$$#"#"#%'$&%#$#")$&.'#&$%$$$$($&#)#%$#%,10*)%$&$,)&'"%#"%$&%1&')&%%%'-A:10/,+(*0KLI,,I330,**.,$&$'&,7255.)+(%'&&+$,%%%'$$$&&%$$&''$*)$$%#%$&$'%#$$$#"##$$%$$(#*'#$&%#&$#$$$(%&%'1)'%$/,(')3+0-,,1*)0$##'#$%$&&(#$$##"#$#'&$,(&&#$%$&$$)&+,++**(%+'&&%$$$%"$"#%$,5')(''&',:M/($&,&($%$$((7,&%%--$&$##$%$$%))$+*',.--+-3/'$')%&##&$*($''-3E3)$)'&('&)#&&())+)))('(&/*))',-&0**('&%#$##$)#'&+,,(&&&%)'%%$%&&*+&%$%"#$$$%)(()%&"#&#)&1.+,**++-C$&$$&$4(%)$$##$#$&$% diff -r 000000000000 -r e5072f0d3772 test-data/poretools-tabular-out3.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/poretools-tabular-out3.tabular Tue Dec 19 14:52:30 2017 -0500 @@ -0,0 +1,13 @@ +length name sequence quals +202 @b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 GAAATTGCTGGTTGCTCCCCGAGGGGCCTATAAACAATCGGATAAGGGTCTAAGTCAGGGCGAAAAAGATTTGGGGGCTCCTAATCTCCGATAATGAGTGCCGCAACATACGGATAGTACCTTTATGCGTAACCGCTCCATACGACAAATAATTATTTATATACGGTACCTACGGAACCAAAATTGACAAGTTCGTACTTTT )))))+*,,*,*--,-,..---./0..++++-/-//**)*)))*,,.///---**)))*))+/,//-.,00.--)***+*+))),)*)))+).*----.--**..,-,**,**,+++++,+*+*)**+,,,**((+,,+,))()**+,++,+**+--,)(((((()(((((()(())))+,//),+--.+(())(((()((( +159 @b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 ATCGACCATATTGGCTTTTTGGTTATCCTGGTCTACCTCTTGTTGTCTTGGTGGGTGCCAACAGCTATGCATCTGTTGCATCAATCGTGACGGGAAACGAGAGGACAATTTCCCGGGTTAAACATGCCGATTGTCAGCCGCGGGGGCTGGGGAGGTTCC ""$"#$$&%$(&$"#$,<0-+(-'%(#$%$&(&%$$$%'-,(0'$)%(&$"'"#"'"$#$"&#&$##&%$%'%&'00,&'%#$##$$&"####%$'#%(''$$"$"($/=,)''#$$'%%'$'$)$%&$%()''%%"%&%%%(*#(%"$&&(&##&)&$ +212 @b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 CTTCTGTTGTGGTGCTCTTGCTCCCCAGGGGCCTATAAACGTGCACATAGGGTCTAAGTCAGCGAAAAAGATTTGAGGCTCCCGTATAGATAATGGATCCCCTCAGCCCTAGCTGACCGTCATCCGTAACGCCTCCATACATAAATAATTATTTAGCTCTAGTACACCCAGGCGGATCGCTTCTGGTTTTATATTTCTTGATTACTGATGCA "#')-,;42;7<8544/22.**)-(*()*(')%%&''-*0..+)%%$"'%'*/'%%&$&$%&##$%%(%)%/4)&#&'#$#$#$*#$"#&$$#'&$#*$%&##(&"*%)%&$&&&**(&(%%(%%),-%&%')*/,,(((%$%'$##","#,2''#$$('('*()(+)''&*)%$'(%#&%4.01-17;2&&$'12'')"%)&#$#"$)&'# +413 @935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 GCTTCTTCTGCTTATATTGCTTAGAAGGAAATACGAGAGGAGAAAGAGTAGATGATGATAAAGGGTCGACTAATTATTTCCGAAGTTTGTTAAAGTCGAAATCGCTTCGAATTTGAAATTGTTGCTGACGCAAGTTAGCGATGCGCGATCCCAGGAGTATAGGGGTTGAAAACGGTTCCATTTGATAAGGTTTTCCATTAATGACGTCACGTTGTTTGGTATTTCCTTCTATTTTCTCCGAAGCGCCCCTCTCTCTCTCATCTCACGTCAGATTCAATTTTATTACAACAAATGTGAAAAGTGGGTTCGCAGAGGTCGCTTAAGCCATTTTCTTAGATACAGCTTGAAAACGAATCTACAGAACAAATCTCCTGCCATTACACTCAGAGTCATGACGGTCGTGTTTATAGAGT ))****-+.,,,++,,-,...-*++/,0.1,++,,..-0/)+-/,----,+,,,-,--,-+****+**+**+-.-.0500-.0-,,+*,.,,,,+-*+./.++,.////10+/,/03/10/.0..-*--./0001.--.++../////0--,./0//****.//..--).0-,-*,,+*)10,+-+++,,./+,+++*)+-++++**)))*))*)+*+,*,.0,.+,****,--)))*)()+(*))))))))**,,,,*))((*))**))(*++(+*-,-,())))**+-0-*****./,)****-0/..,-,,.--,-+,****-./680/--*)+000/.//-,/03/..0--.*,++*+*)**)*)*++++.//0/,++**+))*+++*)))**++-,-,3520...**) +376 @935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 ACTCTAACTCAGGCTGGTATCTGAGTGTAATGGCGCAGTTGTCTGTAGGGTCGTTCAAGCTGTATCAAGAAATGAGTAAGCGAAAACCTGCGAGCCGATTTTCGCTTTGTTTAGTAAGGTTAGTGACGTGAGGGTGAGAGAGAGAGAGAGCGTTCGGAGAAAATAGAAGGAGAACCCAAACAACGTGACGTCATTGATGAAAACCTTATCGGGAACCCGTTTCAACCCCTATACTCCTCGGCGCGTAGGCTAACTGCGTAGCAACATTCAATTCAGCAGTTTTCCTGTCAGCGACTTCGGAAGCTTAGTCAACAGTGTTTATCAGCTCCTCTTCCTCTCGTATTTCGTTCAAGCAATATAGCAGAGGCGCCTGTCC "$###$$$#%#$"###$'###$"&'.)*(*+,-)$%$&/&$1(*),&&%%('$1)%##%%))+((%#$+&*%&&%$%%'(*,--+()$+-+),#*'%')4:*'$$*:,')'#%#%$&%$+++$*%$'&&)&&&&')'+*-,+*'&*$)%'&&'')'*)+,--'&&'$)(2&$)%%&(&&$&%#%%)$%&&((*(+$')(&(%##'+,+,)'((%%$%(*02*')&))+'"%$%%&'$#&%$$(#$&$%%##'&&,*))*((&%#(%*,(*(**$'()%#*=?/-&*)*(##&%'&+,(+*,)%'&*+*+('%($#'#*2+('%$$$&&%#$(+(('''(')'+30,$)*'((*('&&%#$$%%&%''$'$%&&1/$ +373 @935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 CATTCTTTGGTGCTGATCCTGCGAGGAGAGGGGGAGGGGAACAATGGTAGCCACTAAATCTATAACAATTATTTCAGAAGTTGTCCGCTTGAATCATTCATTTGAAATTGTTAGTGACGCAAGTTAATGCGCGATCCCAGGAGCGGGCTCGTCCAGTTTACAATTGTCCATGCGTAGTCAGTTGTTATGTTGATTCCTGTTACCGATAGGGTATATAACGCTCCTAGTCGATTCGATTTGCTTGGCGCCATCCAAGTATTCCAGAGTCCTTAGCATTTTCTTAATGGCACGTGAAAACGAATCCCCTAAGAGCCACTTATCACGTCCGATTACATACTCCAGTCATGACGCTTCTGTTTATGTTTCTTAACCA ##''$%)0%%)$&''',&'(&&$-+*-'('*+(('$$&#'#$%$%##$$#%$$#"$%$'$##$%"%#%)&$,5+($),,*0(&,####&)()(**)+)&$&,$&%1,3-*.''#'#$'('/*)+&&&+$&'%()*((%%)$&$#####"$%3%)')5/($$##&*$0%&()#$%%$$&'%(+%&-)%&%,-##((%$%&)*%&&#%""####"#"$$##""#('#$''$$&)0(&(.//$$&&###%&&+%('&%##%+)&&'%$#&%#%$#"(%/FA/+,(&'##$&%%#(&%*1)*()'())*("#$$(%%(&%*%$$$"$#($%##+$$%$####%$'&((&&$$%$)'1.+*:7,))',7&%)#$#$$# +523 @e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 ATGTTTCTTCAGTGATACCTGTGACATCCGGAAAGGAGGAGGAGGATCAGAAAGGAGGAGTGTGACATAACGCTGACAGTGCGTGCTTAGGTTCGTTAATAAACAAAGCCATATTACGGAGATGGCGTAATCACCTACGATGAAAGTGGTCACGTACGCGTGCCACCTGGGCATCGTCCTCACCCCTTCATTAAATTACAGGCTTTTGACTCCTTCAACCTTCTCGTTGTAATTGGTTAGTACTTATCCTATCTTATTCGCGATCGGCGTTCGATTGGATTTCGCTTCGAATGTAATCCGTATGCGCAATACAAATATTTGAGCTAATTTCCTCTCTTTACGTAATCGTTTTCGTCACCGTCGTCAATTATCGATACGGGAATCAAGTCGAACGAACCCCTGACCGAGAATCAGAAAAACTTTCAGAAGAAAAAGGAAGAAGAGAAAGCTCTTTCACATTGTAAACCAAACGCGAAAGCTCCCGAAAACAAAGGGCGGCGATTCTAAACATTTGGTTTATGTT (((*-,+,,,++*()(())*-)),....+/-,.),-++--./-,))*()))+*+*)*-*,**)())((*)(*()(*--+**)()()*(())))*,--*,+,.,---+)+))()**((())*+,-/./,--,++****+,+,,-02.///..-.--...,,))))))*++,+*++,+++*)*++-+*+**)+++**+)))(((())+*()((()(()))))))((((),-./--+*)))((((()((((((*+,,+,*+*,++++****,1.+*++,+,-.2-,+,-,+*,*.-.1/----*+,*+**++***./.-+*-+))))*,,-/*-*****-,*))))**,+++-,++++*+*,-../.-,**)*)+******-+,+)*++*+-.//../..,,+,..+.)+-+,))*+*++,+*,----.//-0662.-,--.-0.../.,+))-,2/.-++*****+**++++-+-...+,+*****,,.,+*.+,,,++*)))+/.,-10,+***)**++***+* +464 @e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 GAACACAACTGTTTCCCAGTACACGCTTTGTTTAAGCTTTCGCGTTGGTTCCATGTGAAGAGCTTCTGTTCTTCCTTTTTTGGTATGAAAGTTTTAGTTCTCTTCAGAGTCGTCCCACTTGATGTCCCGTATCGCTTGTGGACATTGTAGAAATGATCGTAAGGGCAGAGGAATTAATTAAAACTTTGTGGTGCCATCCCATTACGGTCGAGCGAATCCAGTAGCACCAGTACCCAGTAAGAACGAACCCTGAGCCAATTACACAGAAGGTTGAAGGAGTCAAGCTGTAGTTGGAAGGGGTGAAGGTCCGCACAAGATTCGATCCTCGTTATCGTACCTGATTACACATCTCTGCGTGATATGATGATTCTTTATTAGCAACCGAGCACGCACTGTTGGCGTTATGTTCGGATACTACGGTCTATCCTCTCAAACGGTCCAGCTCCCAACATCGGCGTCAGTCA #"#$"$%%#$#*3.$%&%$(#$%#$#'-,(4*$#$$%(2+'&%%*.%%,:'%&,)*,'%(%%$*,'''(*(%,'%)2>B>/'#$$&&$)+%/;,&#$()'&'&&($%#$(&&*&$$$#%%$$'&)+%&$)#%$##%'%&%#$$#&-%##&$&$#$#%$$$%&##&$$$&,-('(###'$')'#$+14(&$$($%$%#$&#'*+)*%)+$$&%$'&&(%&&%)"%$$'&%#)#%'#'$'%'(%&%%&%&%#$###&#&'+&####$($$$#'*)(+,-*$)&&'$&%$$$$((%+'&&$%#''$$$#&$%%$#$$$,%(*&"#&###(&*$%%%$&#$$%$&)+()$(&'$%$$##$)"&$#$##$&#&.#&1)&(%%'%&#'%#&&&%$&%$%(',('('&)+&%%-&#"$#%$%$$'$$,)(),'%%$$$###'##*((%(%%'%#$##"%##$(*-)&'&%# +494 @e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 TTGTGTTTCTTCTTATGACTTGCTATGCGCAGGGGGGAGGAGAGATGTAGCGGAGGGCAGAGTGTGAAAGGGGTAGTTCATTATGCTGTCGTTAAGCCTCCGGGGCTATTGAAAACGATGAATGGGGCCAGGCGCTGGTCACGTACACGTGCGACACTGATGAAACGTTCCTCACCATTCATTAAATTACCGGCTTTTAAACGTGAACATGCTGTTGTAATTCTTCATGGTGGTGTAATGTACTTAGCAGTAGCGTTCAATTGGATTTCGCTTCGAATGTAGTCGATCTGCGCATCCACTGGTCGACGATTTCCTCTCTTTACTGATCGTAGTTCGTCACGTCGTCGTACGATAGGATCAAAGTCGCGGGATGGCTATCCCCGGGCGAACTTTCCAGAGAAGGAAGAAGAAAGACCTTTCGGCTTGTAGTAAGACCCCGAAGACTCGAAAACAGGGCAACGCGAATTCCACTTCGTTATGTTCTTACTATTGGA #$$*)*8+$()&(%%$#$#&'$#"%%#$($+&,&(-(',.,*%$%%$$$"$$('%%'&('%%%%%$##$#$$"$#$%&%$&$#'$$#$)''+&$%"&##($#$$###$*&*$&(%%$&($&$&"###%$$#&"#!%$$($$%$'$&%&'*%&$#$#$%$$$($/$/.2)'$#%#%(#**)%)&'$#)%#%''(%')0'$%#$$'$&#$#&$&$&,2-,/%1,"%*%%$#%&##%%&)((('&%(&&%'*%&'$((-:'%(**)((/5)%$&,,*%)#'%$$#&$"#'$)$&%%%#$$%#$#"'$"#$"$17)&##%&')3'##$$$$$#%#%+)'&)&#+*,)&'%%&#%#%#$*%&%$%%##&&#%%'#'#$$%##$%)$'%%'%#'$#)48$$#%#'#*)-,,))')((%#$#&&-'(##'%*%$&"""$#$#')%$'($$#"'$&&)$&'%(*&%%'$$)+)6*(#%#%'%&*,)(&3*$%'$%%$(,,&# +692 @2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 CATGTTTCTGCTGATATTGCTAATGGCTGAACTGGAAATAAGGATCCGTTGCTTGCCAACAACTATACTGCGTGGTATTTTCCCAGTGGAAAGATCGGGAACCTTTGATCTTCAATATAGTTACAATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTTGGGTATAACAGGATGAGGAGGACGATTCGAAGTCACGATCATGCGCCCAAGTCAGAATGACTCCACACTACTCCTCCTCAGGACCATTTATAAATAAACAGTGATCAAGATTCCAACAATTAAGATGGCTTGAAACCAATTTCTGCTCTTGTTTTTGTTCCCACTCCCCCCTCCCCCCGAGGTCAGGATGAAGTATTAACTCTGAAGATAAAGGACCCCACGACGACAACGGCTTCCAGTTACTTCGAAGGCATTTTTCTACTTCTACTTCCCCTCCGTCTCATCCTCCTCCTCAGCTACCAAATTCACAATAGGACCGCAGGAAAAGTCTGTAGCGAATAGAACCTTCTTCACTACGGTTTCGTACCTAAAATGTTCTGGAAAAATGGATAGAAAAGAATCTTTTAAAATCGAAATCCGATTTTCGGAGTGTTAACAATGTAACTGTTGTAGAAAAGGAGCGGTAAATGAGACGTGGGGAATAAGATACAGAGCAACCACTGTCGTTAAGGACCGTTTGAGTGTTT ))))+-*)*)+**++**+)*)*,-,,+++-+++/./20.//.+...*.,-,--+***,+++++**+++,.//.,++,.54.320/--.,-.++-.,,.-++++*,+,-./0/.0000/..0-,----/.----,+++++,00.//./.++*+//0.//00/285/+*+**+-,,,,,-,**,,,+--00*0/)*.,+,+.,,,+++,,-+*,*+-+,+,--..,+****)**+++,+++***)*+)**)-,.20//02-))**++*+**+*+**-/0./-,,,--))*))++)+*++..,,+-./.+++++,++++,025-,5.-/,-//0/---,,.43430,,-+,+,.,/..-.+***)))))..//-+,***)))+)++))),***)**))(())--.-())((,((*(*(((*+-0/---,*/**)*,-/.0.-,.,++)*,+,,-,--,-,+++**))**,+*+*))))*))))*))+(+,-+,**)))*)*)))*++((*+****,,,---+*,+*+,0,++*)))(,03.--1+***-*-)*)+****))))+))+***+21--/.-)))**)*)***-10--,-,,+*+)))+,..,,/,,,,-,+)())***)())*++++,+)))***+*))((,+(((())(*)()()***,,---,,,+)((((,()**.*(***+))) +602 @2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 ACACTAGCATCTGTCTGGCCCCGATATTTGTAGTATGTACTTTACGTGTACTGTTACTATGGTATTTTCACCCTCAGTTTGCCCTTGTCACTCGAAAGTCGAATTCAGTGTTTTAAAAGATTGTCTGGTTCTATCGGTTCCGAGCAGTTTTAATAGAACTGATCAATGAAGAAGGTTCGTTCGAGCGAACTTCCAGTGATCTTGTGAATTTGAGCTGAGGAGGAGATGAAAGAGGGAAGTAGAAGTAGAAAAATTGCATCGAAATATGGAATAAATTGTATCGTCGGTCTTGCTTTTATCTGTCAGTTATACTTCAGTAGGAGGGAGTGGGATAACGACAGCAATTAGTTCAGCCTTAGTGTTGAGGAATCTGGTTCTTTAACATCTTTGGTGGGAGGAGTGTCCTTGATTTAATATGCAGAAGTATCCTTGCTGCGAATCGTCATCATCCTTTAACAATAGGATGAAAACCGTTAAAATGCCGACAGTTGGACCTGCGAGCCGCCGGCCCGTATTCATGGGAAAGTACCGCATTAACGTGTGTCAGGCGGGACGTATTATTTCCCGTTCAGCCGATTAAGTATACAGGCACAGAGACTTCC ####"##&%##$#+%%##%#'%#$%$)-)'($%&&((,()+-'&'(($%#(&%1-$##$'$#%#'08+'$$%#"&$#&.+$%*#('%%##$$&&)))$(''($(('##+)6<4)'(*()',,(.'&%&'*($%&%##-,('#$$"$$'04)&%$#('&%%%%'$##(%%$*$'$#'''&),%$%$%$%$$$*+%$%(%%&&''%%(&%1-(%$"#%&&+**-,'&''((&#'#$&%'&%'#(&+#)*))//+&&%$%$%$%&)&&$),-*&%$$$&)%$#$'&+(#%'&''$##(2(%&$%$..('($&%%*.+'$%%%),')'()%*'&)%#&##"###&%%%'*$'++($$%#'%%"($)&#$%''&(**)$+*&)3-&%$$$#$)&$%'%)*')&&$%%&$#&($#+0&$"##%###'%(%'&(%$%(%#&$%$&$&$#%###$$&$%&+&&$$%&$$'('&(&&&#%$$'%%&'%'"%###$$#-)%#$#%'%%$&'''"&%$$'%$$)#(-*&)+09))'#'#%&%&$$(&%%%)(+()&%$('"""$"#&#'$$'./(*&&('%$#$$##'%$&$&%$"&"))##$#'$##"$)'$ +657 @2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 GTATTTCTTATGATATTAGATGTAGGCTGGAAATAGAATGCGTGCTTTACAGGCCTCCTCTGCGTATGTTTCCATGGAAGCCGTAGGAACCTTTGATCTTCATACTTGCCCTATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTGATATAACAGGATACGGAAAGAGTTCGAAGTCGAATCGTCCAGCAAGTCGAATGACTCTAAAGACATCGGCACGGCCTTTGAGGCTCGTATATGCCTAATTCCAACAATGCAAAGTACGTGGAACAGATTTCTGCTCTTTTTTGTTCCACTCCGCCAGCCCCCCGAGGTCAGGATGAAATATTACTCTGAAAACCGCCAACCCACGGGACAGCTACGTCGAATGTCGTCGAACAGTTCTATTCCTTCCCCTCCGTTAGTACTACTCTAGGCTACTCAATTCAGGCGATAGAAGGAAAAGTCTGTACCAGGCGGGTTCTTCGGCTTTTCAATGCGCGCTGTTCTGGGGAGCTATCGCTGCAAAGAATCTTTTAAAATCGAGTCGAGTTTTCAGAGTGTTCCTCAATGTAACTGTTGGCAAAGGAGCGGGCCTGGCAGACGTGGGGAATAAGACCCCAAAACCACTTCGTGCACATCGTTCTGGTGTTCATCTGTTCTTAGCTCTTGT "##)7.'-(&&$$&#'$$$''%$%$&(),210)&&)&)+&.-+'((,%#))())&%)(')+)*+.***CC/&'$'')(*###$&%)5)1')&./%%)%++)&%$%%.#''(#%*)+&&).*)'*%$+A/'&%+%)''-;+)-'++-1)9>0()((%&%&&(')%$%#+-/&'#%+3&**/&''&'%'%$($%&$'(&'(&)*++)('&'#$$#"#"#%'$&%#$#")$&.'#&$%$$$$($&#)#%$#%,10*)%$&$,)&'"%#"%$&%1&')&%%%'-A:10/,+(*0KLI,,I330,**.,$&$'&,7255.)+(%'&&+$,%%%'$$$&&%$$&''$*)$$%#%$&$'%#$$$#"##$$%$$(#*'#$&%#&$#$$$(%&%'1)'%$/,(')3+0-,,1*)0$##'#$%$&&(#$$##"#$#'&$,(&&#$%$&$$)&+,++**(%+'&&%$$$%"$"#%$,5')(''&',:M/($&,&($%$$((7,&%%--$&$##$%$$%))$+*',.--+-3/'$')%&##&$*($''-3E3)$)'&('&)#&&())+)))('(&/*))',-&0**('&%#$##$)#'&+,,(&&&%)'%%$%&&*+&%$%"#$$$%)(()%&"#&#)&1.+,**++-C$&$$&$4(%)$$##$#$&$% diff -r 000000000000 -r e5072f0d3772 test-data/poretools-tabular-out4.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/poretools-tabular-out4.tabular Tue Dec 19 14:52:30 2017 -0500 @@ -0,0 +1,13 @@ +length name sequence quals +202 @b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 GAAATTGCTGGTTGCTCCCCGAGGGGCCTATAAACAATCGGATAAGGGTCTAAGTCAGGGCGAAAAAGATTTGGGGGCTCCTAATCTCCGATAATGAGTGCCGCAACATACGGATAGTACCTTTATGCGTAACCGCTCCATACGACAAATAATTATTTATATACGGTACCTACGGAACCAAAATTGACAAGTTCGTACTTTT )))))+*,,*,*--,-,..---./0..++++-/-//**)*)))*,,.///---**)))*))+/,//-.,00.--)***+*+))),)*)))+).*----.--**..,-,**,**,+++++,+*+*)**+,,,**((+,,+,))()**+,++,+**+--,)(((((()(((((()(())))+,//),+--.+(())(((()((( +159 @b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 ATCGACCATATTGGCTTTTTGGTTATCCTGGTCTACCTCTTGTTGTCTTGGTGGGTGCCAACAGCTATGCATCTGTTGCATCAATCGTGACGGGAAACGAGAGGACAATTTCCCGGGTTAAACATGCCGATTGTCAGCCGCGGGGGCTGGGGAGGTTCC ""$"#$$&%$(&$"#$,<0-+(-'%(#$%$&(&%$$$%'-,(0'$)%(&$"'"#"'"$#$"&#&$##&%$%'%&'00,&'%#$##$$&"####%$'#%(''$$"$"($/=,)''#$$'%%'$'$)$%&$%()''%%"%&%%%(*#(%"$&&(&##&)&$ +212 @b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 CTTCTGTTGTGGTGCTCTTGCTCCCCAGGGGCCTATAAACGTGCACATAGGGTCTAAGTCAGCGAAAAAGATTTGAGGCTCCCGTATAGATAATGGATCCCCTCAGCCCTAGCTGACCGTCATCCGTAACGCCTCCATACATAAATAATTATTTAGCTCTAGTACACCCAGGCGGATCGCTTCTGGTTTTATATTTCTTGATTACTGATGCA "#')-,;42;7<8544/22.**)-(*()*(')%%&''-*0..+)%%$"'%'*/'%%&$&$%&##$%%(%)%/4)&#&'#$#$#$*#$"#&$$#'&$#*$%&##(&"*%)%&$&&&**(&(%%(%%),-%&%')*/,,(((%$%'$##","#,2''#$$('('*()(+)''&*)%$'(%#&%4.01-17;2&&$'12'')"%)&#$#"$)&'# +413 @935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 GCTTCTTCTGCTTATATTGCTTAGAAGGAAATACGAGAGGAGAAAGAGTAGATGATGATAAAGGGTCGACTAATTATTTCCGAAGTTTGTTAAAGTCGAAATCGCTTCGAATTTGAAATTGTTGCTGACGCAAGTTAGCGATGCGCGATCCCAGGAGTATAGGGGTTGAAAACGGTTCCATTTGATAAGGTTTTCCATTAATGACGTCACGTTGTTTGGTATTTCCTTCTATTTTCTCCGAAGCGCCCCTCTCTCTCTCATCTCACGTCAGATTCAATTTTATTACAACAAATGTGAAAAGTGGGTTCGCAGAGGTCGCTTAAGCCATTTTCTTAGATACAGCTTGAAAACGAATCTACAGAACAAATCTCCTGCCATTACACTCAGAGTCATGACGGTCGTGTTTATAGAGT ))****-+.,,,++,,-,...-*++/,0.1,++,,..-0/)+-/,----,+,,,-,--,-+****+**+**+-.-.0500-.0-,,+*,.,,,,+-*+./.++,.////10+/,/03/10/.0..-*--./0001.--.++../////0--,./0//****.//..--).0-,-*,,+*)10,+-+++,,./+,+++*)+-++++**)))*))*)+*+,*,.0,.+,****,--)))*)()+(*))))))))**,,,,*))((*))**))(*++(+*-,-,())))**+-0-*****./,)****-0/..,-,,.--,-+,****-./680/--*)+000/.//-,/03/..0--.*,++*+*)**)*)*++++.//0/,++**+))*+++*)))**++-,-,3520...**) +376 @935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 ACTCTAACTCAGGCTGGTATCTGAGTGTAATGGCGCAGTTGTCTGTAGGGTCGTTCAAGCTGTATCAAGAAATGAGTAAGCGAAAACCTGCGAGCCGATTTTCGCTTTGTTTAGTAAGGTTAGTGACGTGAGGGTGAGAGAGAGAGAGAGCGTTCGGAGAAAATAGAAGGAGAACCCAAACAACGTGACGTCATTGATGAAAACCTTATCGGGAACCCGTTTCAACCCCTATACTCCTCGGCGCGTAGGCTAACTGCGTAGCAACATTCAATTCAGCAGTTTTCCTGTCAGCGACTTCGGAAGCTTAGTCAACAGTGTTTATCAGCTCCTCTTCCTCTCGTATTTCGTTCAAGCAATATAGCAGAGGCGCCTGTCC "$###$$$#%#$"###$'###$"&'.)*(*+,-)$%$&/&$1(*),&&%%('$1)%##%%))+((%#$+&*%&&%$%%'(*,--+()$+-+),#*'%')4:*'$$*:,')'#%#%$&%$+++$*%$'&&)&&&&')'+*-,+*'&*$)%'&&'')'*)+,--'&&'$)(2&$)%%&(&&$&%#%%)$%&&((*(+$')(&(%##'+,+,)'((%%$%(*02*')&))+'"%$%%&'$#&%$$(#$&$%%##'&&,*))*((&%#(%*,(*(**$'()%#*=?/-&*)*(##&%'&+,(+*,)%'&*+*+('%($#'#*2+('%$$$&&%#$(+(('''(')'+30,$)*'((*('&&%#$$%%&%''$'$%&&1/$ +373 @935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 CATTCTTTGGTGCTGATCCTGCGAGGAGAGGGGGAGGGGAACAATGGTAGCCACTAAATCTATAACAATTATTTCAGAAGTTGTCCGCTTGAATCATTCATTTGAAATTGTTAGTGACGCAAGTTAATGCGCGATCCCAGGAGCGGGCTCGTCCAGTTTACAATTGTCCATGCGTAGTCAGTTGTTATGTTGATTCCTGTTACCGATAGGGTATATAACGCTCCTAGTCGATTCGATTTGCTTGGCGCCATCCAAGTATTCCAGAGTCCTTAGCATTTTCTTAATGGCACGTGAAAACGAATCCCCTAAGAGCCACTTATCACGTCCGATTACATACTCCAGTCATGACGCTTCTGTTTATGTTTCTTAACCA ##''$%)0%%)$&''',&'(&&$-+*-'('*+(('$$&#'#$%$%##$$#%$$#"$%$'$##$%"%#%)&$,5+($),,*0(&,####&)()(**)+)&$&,$&%1,3-*.''#'#$'('/*)+&&&+$&'%()*((%%)$&$#####"$%3%)')5/($$##&*$0%&()#$%%$$&'%(+%&-)%&%,-##((%$%&)*%&&#%""####"#"$$##""#('#$''$$&)0(&(.//$$&&###%&&+%('&%##%+)&&'%$#&%#%$#"(%/FA/+,(&'##$&%%#(&%*1)*()'())*("#$$(%%(&%*%$$$"$#($%##+$$%$####%$'&((&&$$%$)'1.+*:7,))',7&%)#$#$$# +523 @e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 ATGTTTCTTCAGTGATACCTGTGACATCCGGAAAGGAGGAGGAGGATCAGAAAGGAGGAGTGTGACATAACGCTGACAGTGCGTGCTTAGGTTCGTTAATAAACAAAGCCATATTACGGAGATGGCGTAATCACCTACGATGAAAGTGGTCACGTACGCGTGCCACCTGGGCATCGTCCTCACCCCTTCATTAAATTACAGGCTTTTGACTCCTTCAACCTTCTCGTTGTAATTGGTTAGTACTTATCCTATCTTATTCGCGATCGGCGTTCGATTGGATTTCGCTTCGAATGTAATCCGTATGCGCAATACAAATATTTGAGCTAATTTCCTCTCTTTACGTAATCGTTTTCGTCACCGTCGTCAATTATCGATACGGGAATCAAGTCGAACGAACCCCTGACCGAGAATCAGAAAAACTTTCAGAAGAAAAAGGAAGAAGAGAAAGCTCTTTCACATTGTAAACCAAACGCGAAAGCTCCCGAAAACAAAGGGCGGCGATTCTAAACATTTGGTTTATGTT (((*-,+,,,++*()(())*-)),....+/-,.),-++--./-,))*()))+*+*)*-*,**)())((*)(*()(*--+**)()()*(())))*,--*,+,.,---+)+))()**((())*+,-/./,--,++****+,+,,-02.///..-.--...,,))))))*++,+*++,+++*)*++-+*+**)+++**+)))(((())+*()((()(()))))))((((),-./--+*)))((((()((((((*+,,+,*+*,++++****,1.+*++,+,-.2-,+,-,+*,*.-.1/----*+,*+**++***./.-+*-+))))*,,-/*-*****-,*))))**,+++-,++++*+*,-../.-,**)*)+******-+,+)*++*+-.//../..,,+,..+.)+-+,))*+*++,+*,----.//-0662.-,--.-0.../.,+))-,2/.-++*****+**++++-+-...+,+*****,,.,+*.+,,,++*)))+/.,-10,+***)**++***+* +464 @e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 GAACACAACTGTTTCCCAGTACACGCTTTGTTTAAGCTTTCGCGTTGGTTCCATGTGAAGAGCTTCTGTTCTTCCTTTTTTGGTATGAAAGTTTTAGTTCTCTTCAGAGTCGTCCCACTTGATGTCCCGTATCGCTTGTGGACATTGTAGAAATGATCGTAAGGGCAGAGGAATTAATTAAAACTTTGTGGTGCCATCCCATTACGGTCGAGCGAATCCAGTAGCACCAGTACCCAGTAAGAACGAACCCTGAGCCAATTACACAGAAGGTTGAAGGAGTCAAGCTGTAGTTGGAAGGGGTGAAGGTCCGCACAAGATTCGATCCTCGTTATCGTACCTGATTACACATCTCTGCGTGATATGATGATTCTTTATTAGCAACCGAGCACGCACTGTTGGCGTTATGTTCGGATACTACGGTCTATCCTCTCAAACGGTCCAGCTCCCAACATCGGCGTCAGTCA #"#$"$%%#$#*3.$%&%$(#$%#$#'-,(4*$#$$%(2+'&%%*.%%,:'%&,)*,'%(%%$*,'''(*(%,'%)2>B>/'#$$&&$)+%/;,&#$()'&'&&($%#$(&&*&$$$#%%$$'&)+%&$)#%$##%'%&%#$$#&-%##&$&$#$#%$$$%&##&$$$&,-('(###'$')'#$+14(&$$($%$%#$&#'*+)*%)+$$&%$'&&(%&&%)"%$$'&%#)#%'#'$'%'(%&%%&%&%#$###&#&'+&####$($$$#'*)(+,-*$)&&'$&%$$$$((%+'&&$%#''$$$#&$%%$#$$$,%(*&"#&###(&*$%%%$&#$$%$&)+()$(&'$%$$##$)"&$#$##$&#&.#&1)&(%%'%&#'%#&&&%$&%$%(',('('&)+&%%-&#"$#%$%$$'$$,)(),'%%$$$###'##*((%(%%'%#$##"%##$(*-)&'&%# +494 @e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 TTGTGTTTCTTCTTATGACTTGCTATGCGCAGGGGGGAGGAGAGATGTAGCGGAGGGCAGAGTGTGAAAGGGGTAGTTCATTATGCTGTCGTTAAGCCTCCGGGGCTATTGAAAACGATGAATGGGGCCAGGCGCTGGTCACGTACACGTGCGACACTGATGAAACGTTCCTCACCATTCATTAAATTACCGGCTTTTAAACGTGAACATGCTGTTGTAATTCTTCATGGTGGTGTAATGTACTTAGCAGTAGCGTTCAATTGGATTTCGCTTCGAATGTAGTCGATCTGCGCATCCACTGGTCGACGATTTCCTCTCTTTACTGATCGTAGTTCGTCACGTCGTCGTACGATAGGATCAAAGTCGCGGGATGGCTATCCCCGGGCGAACTTTCCAGAGAAGGAAGAAGAAAGACCTTTCGGCTTGTAGTAAGACCCCGAAGACTCGAAAACAGGGCAACGCGAATTCCACTTCGTTATGTTCTTACTATTGGA #$$*)*8+$()&(%%$#$#&'$#"%%#$($+&,&(-(',.,*%$%%$$$"$$('%%'&('%%%%%$##$#$$"$#$%&%$&$#'$$#$)''+&$%"&##($#$$###$*&*$&(%%$&($&$&"###%$$#&"#!%$$($$%$'$&%&'*%&$#$#$%$$$($/$/.2)'$#%#%(#**)%)&'$#)%#%''(%')0'$%#$$'$&#$#&$&$&,2-,/%1,"%*%%$#%&##%%&)((('&%(&&%'*%&'$((-:'%(**)((/5)%$&,,*%)#'%$$#&$"#'$)$&%%%#$$%#$#"'$"#$"$17)&##%&')3'##$$$$$#%#%+)'&)&#+*,)&'%%&#%#%#$*%&%$%%##&&#%%'#'#$$%##$%)$'%%'%#'$#)48$$#%#'#*)-,,))')((%#$#&&-'(##'%*%$&"""$#$#')%$'($$#"'$&&)$&'%(*&%%'$$)+)6*(#%#%'%&*,)(&3*$%'$%%$(,,&# +692 @2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 CATGTTTCTGCTGATATTGCTAATGGCTGAACTGGAAATAAGGATCCGTTGCTTGCCAACAACTATACTGCGTGGTATTTTCCCAGTGGAAAGATCGGGAACCTTTGATCTTCAATATAGTTACAATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTTGGGTATAACAGGATGAGGAGGACGATTCGAAGTCACGATCATGCGCCCAAGTCAGAATGACTCCACACTACTCCTCCTCAGGACCATTTATAAATAAACAGTGATCAAGATTCCAACAATTAAGATGGCTTGAAACCAATTTCTGCTCTTGTTTTTGTTCCCACTCCCCCCTCCCCCCGAGGTCAGGATGAAGTATTAACTCTGAAGATAAAGGACCCCACGACGACAACGGCTTCCAGTTACTTCGAAGGCATTTTTCTACTTCTACTTCCCCTCCGTCTCATCCTCCTCCTCAGCTACCAAATTCACAATAGGACCGCAGGAAAAGTCTGTAGCGAATAGAACCTTCTTCACTACGGTTTCGTACCTAAAATGTTCTGGAAAAATGGATAGAAAAGAATCTTTTAAAATCGAAATCCGATTTTCGGAGTGTTAACAATGTAACTGTTGTAGAAAAGGAGCGGTAAATGAGACGTGGGGAATAAGATACAGAGCAACCACTGTCGTTAAGGACCGTTTGAGTGTTT ))))+-*)*)+**++**+)*)*,-,,+++-+++/./20.//.+...*.,-,--+***,+++++**+++,.//.,++,.54.320/--.,-.++-.,,.-++++*,+,-./0/.0000/..0-,----/.----,+++++,00.//./.++*+//0.//00/285/+*+**+-,,,,,-,**,,,+--00*0/)*.,+,+.,,,+++,,-+*,*+-+,+,--..,+****)**+++,+++***)*+)**)-,.20//02-))**++*+**+*+**-/0./-,,,--))*))++)+*++..,,+-./.+++++,++++,025-,5.-/,-//0/---,,.43430,,-+,+,.,/..-.+***)))))..//-+,***)))+)++))),***)**))(())--.-())((,((*(*(((*+-0/---,*/**)*,-/.0.-,.,++)*,+,,-,--,-,+++**))**,+*+*))))*))))*))+(+,-+,**)))*)*)))*++((*+****,,,---+*,+*+,0,++*)))(,03.--1+***-*-)*)+****))))+))+***+21--/.-)))**)*)***-10--,-,,+*+)))+,..,,/,,,,-,+)())***)())*++++,+)))***+*))((,+(((())(*)()()***,,---,,,+)((((,()**.*(***+))) +602 @2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 ACACTAGCATCTGTCTGGCCCCGATATTTGTAGTATGTACTTTACGTGTACTGTTACTATGGTATTTTCACCCTCAGTTTGCCCTTGTCACTCGAAAGTCGAATTCAGTGTTTTAAAAGATTGTCTGGTTCTATCGGTTCCGAGCAGTTTTAATAGAACTGATCAATGAAGAAGGTTCGTTCGAGCGAACTTCCAGTGATCTTGTGAATTTGAGCTGAGGAGGAGATGAAAGAGGGAAGTAGAAGTAGAAAAATTGCATCGAAATATGGAATAAATTGTATCGTCGGTCTTGCTTTTATCTGTCAGTTATACTTCAGTAGGAGGGAGTGGGATAACGACAGCAATTAGTTCAGCCTTAGTGTTGAGGAATCTGGTTCTTTAACATCTTTGGTGGGAGGAGTGTCCTTGATTTAATATGCAGAAGTATCCTTGCTGCGAATCGTCATCATCCTTTAACAATAGGATGAAAACCGTTAAAATGCCGACAGTTGGACCTGCGAGCCGCCGGCCCGTATTCATGGGAAAGTACCGCATTAACGTGTGTCAGGCGGGACGTATTATTTCCCGTTCAGCCGATTAAGTATACAGGCACAGAGACTTCC ####"##&%##$#+%%##%#'%#$%$)-)'($%&&((,()+-'&'(($%#(&%1-$##$'$#%#'08+'$$%#"&$#&.+$%*#('%%##$$&&)))$(''($(('##+)6<4)'(*()',,(.'&%&'*($%&%##-,('#$$"$$'04)&%$#('&%%%%'$##(%%$*$'$#'''&),%$%$%$%$$$*+%$%(%%&&''%%(&%1-(%$"#%&&+**-,'&''((&#'#$&%'&%'#(&+#)*))//+&&%$%$%$%&)&&$),-*&%$$$&)%$#$'&+(#%'&''$##(2(%&$%$..('($&%%*.+'$%%%),')'()%*'&)%#&##"###&%%%'*$'++($$%#'%%"($)&#$%''&(**)$+*&)3-&%$$$#$)&$%'%)*')&&$%%&$#&($#+0&$"##%###'%(%'&(%$%(%#&$%$&$&$#%###$$&$%&+&&$$%&$$'('&(&&&#%$$'%%&'%'"%###$$#-)%#$#%'%%$&'''"&%$$'%$$)#(-*&)+09))'#'#%&%&$$(&%%%)(+()&%$('"""$"#&#'$$'./(*&&('%$#$$##'%$&$&%$"&"))##$#'$##"$)'$ +657 @2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 GTATTTCTTATGATATTAGATGTAGGCTGGAAATAGAATGCGTGCTTTACAGGCCTCCTCTGCGTATGTTTCCATGGAAGCCGTAGGAACCTTTGATCTTCATACTTGCCCTATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTGATATAACAGGATACGGAAAGAGTTCGAAGTCGAATCGTCCAGCAAGTCGAATGACTCTAAAGACATCGGCACGGCCTTTGAGGCTCGTATATGCCTAATTCCAACAATGCAAAGTACGTGGAACAGATTTCTGCTCTTTTTTGTTCCACTCCGCCAGCCCCCCGAGGTCAGGATGAAATATTACTCTGAAAACCGCCAACCCACGGGACAGCTACGTCGAATGTCGTCGAACAGTTCTATTCCTTCCCCTCCGTTAGTACTACTCTAGGCTACTCAATTCAGGCGATAGAAGGAAAAGTCTGTACCAGGCGGGTTCTTCGGCTTTTCAATGCGCGCTGTTCTGGGGAGCTATCGCTGCAAAGAATCTTTTAAAATCGAGTCGAGTTTTCAGAGTGTTCCTCAATGTAACTGTTGGCAAAGGAGCGGGCCTGGCAGACGTGGGGAATAAGACCCCAAAACCACTTCGTGCACATCGTTCTGGTGTTCATCTGTTCTTAGCTCTTGT "##)7.'-(&&$$&#'$$$''%$%$&(),210)&&)&)+&.-+'((,%#))())&%)(')+)*+.***CC/&'$'')(*###$&%)5)1')&./%%)%++)&%$%%.#''(#%*)+&&).*)'*%$+A/'&%+%)''-;+)-'++-1)9>0()((%&%&&(')%$%#+-/&'#%+3&**/&''&'%'%$($%&$'(&'(&)*++)('&'#$$#"#"#%'$&%#$#")$&.'#&$%$$$$($&#)#%$#%,10*)%$&$,)&'"%#"%$&%1&')&%%%'-A:10/,+(*0KLI,,I330,**.,$&$'&,7255.)+(%'&&+$,%%%'$$$&&%$$&''$*)$$%#%$&$'%#$$$#"##$$%$$(#*'#$&%#&$#$$$(%&%'1)'%$/,(')3+0-,,1*)0$##'#$%$&&(#$$##"#$#'&$,(&&#$%$&$$)&+,++**(%+'&&%$$$%"$"#%$,5')(''&',:M/($&,&($%$$((7,&%%--$&$##$%$$%))$+*',.--+-3/'$')%&##&$*($''-3E3)$)'&('&)#&&())+)))('(&/*))',-&0**('&%#$##$)#'&+,,(&&&%)'%%$%&&*+&%$%"#$$$%)(()%&"#&#)&1.+,**++-C$&$$&$4(%)$$##$#$&$% diff -r 000000000000 -r e5072f0d3772 test-data/poretools-tabular-out5.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/poretools-tabular-out5.tabular Tue Dec 19 14:52:30 2017 -0500 @@ -0,0 +1,13 @@ +length name sequence quals +202 @b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 GAAATTGCTGGTTGCTCCCCGAGGGGCCTATAAACAATCGGATAAGGGTCTAAGTCAGGGCGAAAAAGATTTGGGGGCTCCTAATCTCCGATAATGAGTGCCGCAACATACGGATAGTACCTTTATGCGTAACCGCTCCATACGACAAATAATTATTTATATACGGTACCTACGGAACCAAAATTGACAAGTTCGTACTTTT )))))+*,,*,*--,-,..---./0..++++-/-//**)*)))*,,.///---**)))*))+/,//-.,00.--)***+*+))),)*)))+).*----.--**..,-,**,**,+++++,+*+*)**+,,,**((+,,+,))()**+,++,+**+--,)(((((()(((((()(())))+,//),+--.+(())(((()((( +159 @b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 ATCGACCATATTGGCTTTTTGGTTATCCTGGTCTACCTCTTGTTGTCTTGGTGGGTGCCAACAGCTATGCATCTGTTGCATCAATCGTGACGGGAAACGAGAGGACAATTTCCCGGGTTAAACATGCCGATTGTCAGCCGCGGGGGCTGGGGAGGTTCC ""$"#$$&%$(&$"#$,<0-+(-'%(#$%$&(&%$$$%'-,(0'$)%(&$"'"#"'"$#$"&#&$##&%$%'%&'00,&'%#$##$$&"####%$'#%(''$$"$"($/=,)''#$$'%%'$'$)$%&$%()''%%"%&%%%(*#(%"$&&(&##&)&$ +212 @b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 CTTCTGTTGTGGTGCTCTTGCTCCCCAGGGGCCTATAAACGTGCACATAGGGTCTAAGTCAGCGAAAAAGATTTGAGGCTCCCGTATAGATAATGGATCCCCTCAGCCCTAGCTGACCGTCATCCGTAACGCCTCCATACATAAATAATTATTTAGCTCTAGTACACCCAGGCGGATCGCTTCTGGTTTTATATTTCTTGATTACTGATGCA "#')-,;42;7<8544/22.**)-(*()*(')%%&''-*0..+)%%$"'%'*/'%%&$&$%&##$%%(%)%/4)&#&'#$#$#$*#$"#&$$#'&$#*$%&##(&"*%)%&$&&&**(&(%%(%%),-%&%')*/,,(((%$%'$##","#,2''#$$('('*()(+)''&*)%$'(%#&%4.01-17;2&&$'12'')"%)&#$#"$)&'# +413 @935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 GCTTCTTCTGCTTATATTGCTTAGAAGGAAATACGAGAGGAGAAAGAGTAGATGATGATAAAGGGTCGACTAATTATTTCCGAAGTTTGTTAAAGTCGAAATCGCTTCGAATTTGAAATTGTTGCTGACGCAAGTTAGCGATGCGCGATCCCAGGAGTATAGGGGTTGAAAACGGTTCCATTTGATAAGGTTTTCCATTAATGACGTCACGTTGTTTGGTATTTCCTTCTATTTTCTCCGAAGCGCCCCTCTCTCTCTCATCTCACGTCAGATTCAATTTTATTACAACAAATGTGAAAAGTGGGTTCGCAGAGGTCGCTTAAGCCATTTTCTTAGATACAGCTTGAAAACGAATCTACAGAACAAATCTCCTGCCATTACACTCAGAGTCATGACGGTCGTGTTTATAGAGT ))****-+.,,,++,,-,...-*++/,0.1,++,,..-0/)+-/,----,+,,,-,--,-+****+**+**+-.-.0500-.0-,,+*,.,,,,+-*+./.++,.////10+/,/03/10/.0..-*--./0001.--.++../////0--,./0//****.//..--).0-,-*,,+*)10,+-+++,,./+,+++*)+-++++**)))*))*)+*+,*,.0,.+,****,--)))*)()+(*))))))))**,,,,*))((*))**))(*++(+*-,-,())))**+-0-*****./,)****-0/..,-,,.--,-+,****-./680/--*)+000/.//-,/03/..0--.*,++*+*)**)*)*++++.//0/,++**+))*+++*)))**++-,-,3520...**) +376 @935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 ACTCTAACTCAGGCTGGTATCTGAGTGTAATGGCGCAGTTGTCTGTAGGGTCGTTCAAGCTGTATCAAGAAATGAGTAAGCGAAAACCTGCGAGCCGATTTTCGCTTTGTTTAGTAAGGTTAGTGACGTGAGGGTGAGAGAGAGAGAGAGCGTTCGGAGAAAATAGAAGGAGAACCCAAACAACGTGACGTCATTGATGAAAACCTTATCGGGAACCCGTTTCAACCCCTATACTCCTCGGCGCGTAGGCTAACTGCGTAGCAACATTCAATTCAGCAGTTTTCCTGTCAGCGACTTCGGAAGCTTAGTCAACAGTGTTTATCAGCTCCTCTTCCTCTCGTATTTCGTTCAAGCAATATAGCAGAGGCGCCTGTCC "$###$$$#%#$"###$'###$"&'.)*(*+,-)$%$&/&$1(*),&&%%('$1)%##%%))+((%#$+&*%&&%$%%'(*,--+()$+-+),#*'%')4:*'$$*:,')'#%#%$&%$+++$*%$'&&)&&&&')'+*-,+*'&*$)%'&&'')'*)+,--'&&'$)(2&$)%%&(&&$&%#%%)$%&&((*(+$')(&(%##'+,+,)'((%%$%(*02*')&))+'"%$%%&'$#&%$$(#$&$%%##'&&,*))*((&%#(%*,(*(**$'()%#*=?/-&*)*(##&%'&+,(+*,)%'&*+*+('%($#'#*2+('%$$$&&%#$(+(('''(')'+30,$)*'((*('&&%#$$%%&%''$'$%&&1/$ +373 @935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 CATTCTTTGGTGCTGATCCTGCGAGGAGAGGGGGAGGGGAACAATGGTAGCCACTAAATCTATAACAATTATTTCAGAAGTTGTCCGCTTGAATCATTCATTTGAAATTGTTAGTGACGCAAGTTAATGCGCGATCCCAGGAGCGGGCTCGTCCAGTTTACAATTGTCCATGCGTAGTCAGTTGTTATGTTGATTCCTGTTACCGATAGGGTATATAACGCTCCTAGTCGATTCGATTTGCTTGGCGCCATCCAAGTATTCCAGAGTCCTTAGCATTTTCTTAATGGCACGTGAAAACGAATCCCCTAAGAGCCACTTATCACGTCCGATTACATACTCCAGTCATGACGCTTCTGTTTATGTTTCTTAACCA ##''$%)0%%)$&''',&'(&&$-+*-'('*+(('$$&#'#$%$%##$$#%$$#"$%$'$##$%"%#%)&$,5+($),,*0(&,####&)()(**)+)&$&,$&%1,3-*.''#'#$'('/*)+&&&+$&'%()*((%%)$&$#####"$%3%)')5/($$##&*$0%&()#$%%$$&'%(+%&-)%&%,-##((%$%&)*%&&#%""####"#"$$##""#('#$''$$&)0(&(.//$$&&###%&&+%('&%##%+)&&'%$#&%#%$#"(%/FA/+,(&'##$&%%#(&%*1)*()'())*("#$$(%%(&%*%$$$"$#($%##+$$%$####%$'&((&&$$%$)'1.+*:7,))',7&%)#$#$$# +523 @e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 ATGTTTCTTCAGTGATACCTGTGACATCCGGAAAGGAGGAGGAGGATCAGAAAGGAGGAGTGTGACATAACGCTGACAGTGCGTGCTTAGGTTCGTTAATAAACAAAGCCATATTACGGAGATGGCGTAATCACCTACGATGAAAGTGGTCACGTACGCGTGCCACCTGGGCATCGTCCTCACCCCTTCATTAAATTACAGGCTTTTGACTCCTTCAACCTTCTCGTTGTAATTGGTTAGTACTTATCCTATCTTATTCGCGATCGGCGTTCGATTGGATTTCGCTTCGAATGTAATCCGTATGCGCAATACAAATATTTGAGCTAATTTCCTCTCTTTACGTAATCGTTTTCGTCACCGTCGTCAATTATCGATACGGGAATCAAGTCGAACGAACCCCTGACCGAGAATCAGAAAAACTTTCAGAAGAAAAAGGAAGAAGAGAAAGCTCTTTCACATTGTAAACCAAACGCGAAAGCTCCCGAAAACAAAGGGCGGCGATTCTAAACATTTGGTTTATGTT (((*-,+,,,++*()(())*-)),....+/-,.),-++--./-,))*()))+*+*)*-*,**)())((*)(*()(*--+**)()()*(())))*,--*,+,.,---+)+))()**((())*+,-/./,--,++****+,+,,-02.///..-.--...,,))))))*++,+*++,+++*)*++-+*+**)+++**+)))(((())+*()((()(()))))))((((),-./--+*)))((((()((((((*+,,+,*+*,++++****,1.+*++,+,-.2-,+,-,+*,*.-.1/----*+,*+**++***./.-+*-+))))*,,-/*-*****-,*))))**,+++-,++++*+*,-../.-,**)*)+******-+,+)*++*+-.//../..,,+,..+.)+-+,))*+*++,+*,----.//-0662.-,--.-0.../.,+))-,2/.-++*****+**++++-+-...+,+*****,,.,+*.+,,,++*)))+/.,-10,+***)**++***+* +464 @e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 GAACACAACTGTTTCCCAGTACACGCTTTGTTTAAGCTTTCGCGTTGGTTCCATGTGAAGAGCTTCTGTTCTTCCTTTTTTGGTATGAAAGTTTTAGTTCTCTTCAGAGTCGTCCCACTTGATGTCCCGTATCGCTTGTGGACATTGTAGAAATGATCGTAAGGGCAGAGGAATTAATTAAAACTTTGTGGTGCCATCCCATTACGGTCGAGCGAATCCAGTAGCACCAGTACCCAGTAAGAACGAACCCTGAGCCAATTACACAGAAGGTTGAAGGAGTCAAGCTGTAGTTGGAAGGGGTGAAGGTCCGCACAAGATTCGATCCTCGTTATCGTACCTGATTACACATCTCTGCGTGATATGATGATTCTTTATTAGCAACCGAGCACGCACTGTTGGCGTTATGTTCGGATACTACGGTCTATCCTCTCAAACGGTCCAGCTCCCAACATCGGCGTCAGTCA #"#$"$%%#$#*3.$%&%$(#$%#$#'-,(4*$#$$%(2+'&%%*.%%,:'%&,)*,'%(%%$*,'''(*(%,'%)2>B>/'#$$&&$)+%/;,&#$()'&'&&($%#$(&&*&$$$#%%$$'&)+%&$)#%$##%'%&%#$$#&-%##&$&$#$#%$$$%&##&$$$&,-('(###'$')'#$+14(&$$($%$%#$&#'*+)*%)+$$&%$'&&(%&&%)"%$$'&%#)#%'#'$'%'(%&%%&%&%#$###&#&'+&####$($$$#'*)(+,-*$)&&'$&%$$$$((%+'&&$%#''$$$#&$%%$#$$$,%(*&"#&###(&*$%%%$&#$$%$&)+()$(&'$%$$##$)"&$#$##$&#&.#&1)&(%%'%&#'%#&&&%$&%$%(',('('&)+&%%-&#"$#%$%$$'$$,)(),'%%$$$###'##*((%(%%'%#$##"%##$(*-)&'&%# +494 @e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 TTGTGTTTCTTCTTATGACTTGCTATGCGCAGGGGGGAGGAGAGATGTAGCGGAGGGCAGAGTGTGAAAGGGGTAGTTCATTATGCTGTCGTTAAGCCTCCGGGGCTATTGAAAACGATGAATGGGGCCAGGCGCTGGTCACGTACACGTGCGACACTGATGAAACGTTCCTCACCATTCATTAAATTACCGGCTTTTAAACGTGAACATGCTGTTGTAATTCTTCATGGTGGTGTAATGTACTTAGCAGTAGCGTTCAATTGGATTTCGCTTCGAATGTAGTCGATCTGCGCATCCACTGGTCGACGATTTCCTCTCTTTACTGATCGTAGTTCGTCACGTCGTCGTACGATAGGATCAAAGTCGCGGGATGGCTATCCCCGGGCGAACTTTCCAGAGAAGGAAGAAGAAAGACCTTTCGGCTTGTAGTAAGACCCCGAAGACTCGAAAACAGGGCAACGCGAATTCCACTTCGTTATGTTCTTACTATTGGA #$$*)*8+$()&(%%$#$#&'$#"%%#$($+&,&(-(',.,*%$%%$$$"$$('%%'&('%%%%%$##$#$$"$#$%&%$&$#'$$#$)''+&$%"&##($#$$###$*&*$&(%%$&($&$&"###%$$#&"#!%$$($$%$'$&%&'*%&$#$#$%$$$($/$/.2)'$#%#%(#**)%)&'$#)%#%''(%')0'$%#$$'$&#$#&$&$&,2-,/%1,"%*%%$#%&##%%&)((('&%(&&%'*%&'$((-:'%(**)((/5)%$&,,*%)#'%$$#&$"#'$)$&%%%#$$%#$#"'$"#$"$17)&##%&')3'##$$$$$#%#%+)'&)&#+*,)&'%%&#%#%#$*%&%$%%##&&#%%'#'#$$%##$%)$'%%'%#'$#)48$$#%#'#*)-,,))')((%#$#&&-'(##'%*%$&"""$#$#')%$'($$#"'$&&)$&'%(*&%%'$$)+)6*(#%#%'%&*,)(&3*$%'$%%$(,,&# +692 @2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 CATGTTTCTGCTGATATTGCTAATGGCTGAACTGGAAATAAGGATCCGTTGCTTGCCAACAACTATACTGCGTGGTATTTTCCCAGTGGAAAGATCGGGAACCTTTGATCTTCAATATAGTTACAATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTTGGGTATAACAGGATGAGGAGGACGATTCGAAGTCACGATCATGCGCCCAAGTCAGAATGACTCCACACTACTCCTCCTCAGGACCATTTATAAATAAACAGTGATCAAGATTCCAACAATTAAGATGGCTTGAAACCAATTTCTGCTCTTGTTTTTGTTCCCACTCCCCCCTCCCCCCGAGGTCAGGATGAAGTATTAACTCTGAAGATAAAGGACCCCACGACGACAACGGCTTCCAGTTACTTCGAAGGCATTTTTCTACTTCTACTTCCCCTCCGTCTCATCCTCCTCCTCAGCTACCAAATTCACAATAGGACCGCAGGAAAAGTCTGTAGCGAATAGAACCTTCTTCACTACGGTTTCGTACCTAAAATGTTCTGGAAAAATGGATAGAAAAGAATCTTTTAAAATCGAAATCCGATTTTCGGAGTGTTAACAATGTAACTGTTGTAGAAAAGGAGCGGTAAATGAGACGTGGGGAATAAGATACAGAGCAACCACTGTCGTTAAGGACCGTTTGAGTGTTT ))))+-*)*)+**++**+)*)*,-,,+++-+++/./20.//.+...*.,-,--+***,+++++**+++,.//.,++,.54.320/--.,-.++-.,,.-++++*,+,-./0/.0000/..0-,----/.----,+++++,00.//./.++*+//0.//00/285/+*+**+-,,,,,-,**,,,+--00*0/)*.,+,+.,,,+++,,-+*,*+-+,+,--..,+****)**+++,+++***)*+)**)-,.20//02-))**++*+**+*+**-/0./-,,,--))*))++)+*++..,,+-./.+++++,++++,025-,5.-/,-//0/---,,.43430,,-+,+,.,/..-.+***)))))..//-+,***)))+)++))),***)**))(())--.-())((,((*(*(((*+-0/---,*/**)*,-/.0.-,.,++)*,+,,-,--,-,+++**))**,+*+*))))*))))*))+(+,-+,**)))*)*)))*++((*+****,,,---+*,+*+,0,++*)))(,03.--1+***-*-)*)+****))))+))+***+21--/.-)))**)*)***-10--,-,,+*+)))+,..,,/,,,,-,+)())***)())*++++,+)))***+*))((,+(((())(*)()()***,,---,,,+)((((,()**.*(***+))) +602 @2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 ACACTAGCATCTGTCTGGCCCCGATATTTGTAGTATGTACTTTACGTGTACTGTTACTATGGTATTTTCACCCTCAGTTTGCCCTTGTCACTCGAAAGTCGAATTCAGTGTTTTAAAAGATTGTCTGGTTCTATCGGTTCCGAGCAGTTTTAATAGAACTGATCAATGAAGAAGGTTCGTTCGAGCGAACTTCCAGTGATCTTGTGAATTTGAGCTGAGGAGGAGATGAAAGAGGGAAGTAGAAGTAGAAAAATTGCATCGAAATATGGAATAAATTGTATCGTCGGTCTTGCTTTTATCTGTCAGTTATACTTCAGTAGGAGGGAGTGGGATAACGACAGCAATTAGTTCAGCCTTAGTGTTGAGGAATCTGGTTCTTTAACATCTTTGGTGGGAGGAGTGTCCTTGATTTAATATGCAGAAGTATCCTTGCTGCGAATCGTCATCATCCTTTAACAATAGGATGAAAACCGTTAAAATGCCGACAGTTGGACCTGCGAGCCGCCGGCCCGTATTCATGGGAAAGTACCGCATTAACGTGTGTCAGGCGGGACGTATTATTTCCCGTTCAGCCGATTAAGTATACAGGCACAGAGACTTCC ####"##&%##$#+%%##%#'%#$%$)-)'($%&&((,()+-'&'(($%#(&%1-$##$'$#%#'08+'$$%#"&$#&.+$%*#('%%##$$&&)))$(''($(('##+)6<4)'(*()',,(.'&%&'*($%&%##-,('#$$"$$'04)&%$#('&%%%%'$##(%%$*$'$#'''&),%$%$%$%$$$*+%$%(%%&&''%%(&%1-(%$"#%&&+**-,'&''((&#'#$&%'&%'#(&+#)*))//+&&%$%$%$%&)&&$),-*&%$$$&)%$#$'&+(#%'&''$##(2(%&$%$..('($&%%*.+'$%%%),')'()%*'&)%#&##"###&%%%'*$'++($$%#'%%"($)&#$%''&(**)$+*&)3-&%$$$#$)&$%'%)*')&&$%%&$#&($#+0&$"##%###'%(%'&(%$%(%#&$%$&$&$#%###$$&$%&+&&$$%&$$'('&(&&&#%$$'%%&'%'"%###$$#-)%#$#%'%%$&'''"&%$$'%$$)#(-*&)+09))'#'#%&%&$$(&%%%)(+()&%$('"""$"#&#'$$'./(*&&('%$#$$##'%$&$&%$"&"))##$#'$##"$)'$ +657 @2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 GTATTTCTTATGATATTAGATGTAGGCTGGAAATAGAATGCGTGCTTTACAGGCCTCCTCTGCGTATGTTTCCATGGAAGCCGTAGGAACCTTTGATCTTCATACTTGCCCTATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTGATATAACAGGATACGGAAAGAGTTCGAAGTCGAATCGTCCAGCAAGTCGAATGACTCTAAAGACATCGGCACGGCCTTTGAGGCTCGTATATGCCTAATTCCAACAATGCAAAGTACGTGGAACAGATTTCTGCTCTTTTTTGTTCCACTCCGCCAGCCCCCCGAGGTCAGGATGAAATATTACTCTGAAAACCGCCAACCCACGGGACAGCTACGTCGAATGTCGTCGAACAGTTCTATTCCTTCCCCTCCGTTAGTACTACTCTAGGCTACTCAATTCAGGCGATAGAAGGAAAAGTCTGTACCAGGCGGGTTCTTCGGCTTTTCAATGCGCGCTGTTCTGGGGAGCTATCGCTGCAAAGAATCTTTTAAAATCGAGTCGAGTTTTCAGAGTGTTCCTCAATGTAACTGTTGGCAAAGGAGCGGGCCTGGCAGACGTGGGGAATAAGACCCCAAAACCACTTCGTGCACATCGTTCTGGTGTTCATCTGTTCTTAGCTCTTGT "##)7.'-(&&$$&#'$$$''%$%$&(),210)&&)&)+&.-+'((,%#))())&%)(')+)*+.***CC/&'$'')(*###$&%)5)1')&./%%)%++)&%$%%.#''(#%*)+&&).*)'*%$+A/'&%+%)''-;+)-'++-1)9>0()((%&%&&(')%$%#+-/&'#%+3&**/&''&'%'%$($%&$'(&'(&)*++)('&'#$$#"#"#%'$&%#$#")$&.'#&$%$$$$($&#)#%$#%,10*)%$&$,)&'"%#"%$&%1&')&%%%'-A:10/,+(*0KLI,,I330,**.,$&$'&,7255.)+(%'&&+$,%%%'$$$&&%$$&''$*)$$%#%$&$'%#$$$#"##$$%$$(#*'#$&%#&$#$$$(%&%'1)'%$/,(')3+0-,,1*)0$##'#$%$&&(#$$##"#$#'&$,(&&#$%$&$$)&+,++**(%+'&&%$$$%"$"#%$,5')(''&',:M/($&,&($%$$((7,&%%--$&$##$%$$%))$+*',.--+-3/'$')%&##&$*($''-3E3)$)'&('&)#&&())+)))('(&/*))',-&0**('&%#$##$)#'&+,,(&&&%)'%%$%&&*+&%$%"#$$$%)(()%&"#&#)&1.+,**++-C$&$$&$4(%)$$##$#$&$% diff -r 000000000000 -r e5072f0d3772 test-data/poretools-times-out1.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/poretools-times-out1.tabular Tue Dec 19 14:52:30 2017 -0500 @@ -0,0 +1,5 @@ +channel filename read_length exp_starttime unix_timestamp duration unix_timestamp_end iso_timestamp day hour minute +128 .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 202 1457127309 1457127626 1 1457127627 2016-03-04T21:40:26+0000 04 21 40 +128 .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 413 1457127309 1457129549 4 1457129553 2016-03-04T22:12:29+0000 04 22 12 +126 .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 523 1457127309 1457148908 5 1457148913 2016-03-05T03:35:08+0000 05 03 35 +126 .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 692 1457127309 1457129771 6 1457129777 2016-03-04T22:16:11+0000 04 22 16 diff -r 000000000000 -r e5072f0d3772 test-data/poretools-times-out2.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/poretools-times-out2.tabular Tue Dec 19 14:52:30 2017 -0500 @@ -0,0 +1,5 @@ +channel filename read_length exp_starttime unix_timestamp duration unix_timestamp_end iso_timestamp day hour minute +128 .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 202 1457127309 1457127626 1 1457127627 2016-03-04T21:40:26+0000 04 21 40 +128 .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 413 1457127309 1457129549 4 1457129553 2016-03-04T22:12:29+0000 04 22 12 +126 .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 523 1457127309 1457148908 5 1457148913 2016-03-05T03:35:08+0000 05 03 35 +126 .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 692 1457127309 1457129771 6 1457129777 2016-03-04T22:16:11+0000 04 22 16 diff -r 000000000000 -r e5072f0d3772 test-data/poretools-times-out3.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/poretools-times-out3.tabular Tue Dec 19 14:52:30 2017 -0500 @@ -0,0 +1,5 @@ +channel filename read_length exp_starttime unix_timestamp duration unix_timestamp_end iso_timestamp day hour minute +128 .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 202 1457127309 1457127626 1 1457127627 2016-03-04T21:40:26+0000 04 21 40 +128 .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 413 1457127309 1457129549 4 1457129553 2016-03-04T22:12:29+0000 04 22 12 +126 .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 523 1457127309 1457148908 5 1457148913 2016-03-05T03:35:08+0000 05 03 35 +126 .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 692 1457127309 1457129771 6 1457129777 2016-03-04T22:16:11+0000 04 22 16 diff -r 000000000000 -r e5072f0d3772 test-data/poretools-times-out4.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/poretools-times-out4.tabular Tue Dec 19 14:52:30 2017 -0500 @@ -0,0 +1,5 @@ +channel filename read_length exp_starttime unix_timestamp duration unix_timestamp_end iso_timestamp day hour minute +128 .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 202 1457127309 1457127626 1 1457127627 2016-03-04T21:40:26+0000 04 21 40 +128 .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 413 1457127309 1457129549 4 1457129553 2016-03-04T22:12:29+0000 04 22 12 +126 .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 523 1457127309 1457148908 5 1457148913 2016-03-05T03:35:08+0000 05 03 35 +126 .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 692 1457127309 1457129771 6 1457129777 2016-03-04T22:16:11+0000 04 22 16 diff -r 000000000000 -r e5072f0d3772 test-data/poretools-times-out5.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/poretools-times-out5.tabular Tue Dec 19 14:52:30 2017 -0500 @@ -0,0 +1,5 @@ +channel filename read_length exp_starttime unix_timestamp duration unix_timestamp_end iso_timestamp day hour minute +128 .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 202 1457127309 1457127626 1 1457127627 2016-03-04T21:40:26+0000 04 21 40 +128 .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 413 1457127309 1457129549 4 1457129553 2016-03-04T22:12:29+0000 04 22 12 +126 .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 523 1457127309 1457148908 5 1457148913 2016-03-05T03:35:08+0000 05 03 35 +126 .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 692 1457127309 1457129771 6 1457129777 2016-03-04T22:16:11+0000 04 22 16 diff -r 000000000000 -r e5072f0d3772 test-data/poretools-winner-out1.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/poretools-winner-out1.tabular Tue Dec 19 14:52:30 2017 -0500 @@ -0,0 +1,2 @@ +>2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 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