comparison poretools_yield_plot.xml @ 2:c5c5a3e84989 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit 506782d1e671505617ff539e6811fcdcc2c02cd5

1:ca22d8497db5

<?xml version="1.0"?>
<tool id="poretools_yield_plot" name="Collector’s curve" version="@VERSION@.1">
    <description>of sequencing yield over time</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <command detect_errors="aggressive">
    <![CDATA[
@MPLBACKEND@
poretools yield_plot '$input' --saveas plot.$extension --plot-type $plot_type

&& mv plot.$extension '$output'
    ]]>
    </command>
    <inputs>
        <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" />
        <param name="plot_type" argument="--plot-type" type="select" label="Plot reads or base pairs">
            <option value="reads">Reads</option>
            <option value="basepairs">Base pairs</option>
        </param>
        <param argument="--skip" type="integer" min="1" value="1" label="Plot only every nth point" help="Increases performance at the cost of resolution." />
        <expand macro="plot_options" />

2:c5c5a3e84989

<tool id="poretools_yield_plot" name="Collector’s curve" version="@VERSION@.1" profile="@PROFILE@">
    <description>of sequencing yield over time</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="bio_tools"/>
    <expand macro="requirements"/>
    <command detect_errors="aggressive">
    <![CDATA[
@MPLBACKEND@
poretools yield_plot '$input' --saveas plot.$extension --plot-type $plot_type

&& mv plot.$extension '$output'
    ]]>
    </command>
    <inputs>
        <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" />
        <param argument="--plot-type" type="select" label="Plot reads or base pairs">
            <option value="reads">Reads</option>
            <option value="basepairs">Base pairs</option>
        </param>
        <param argument="--skip" type="integer" min="1" value="1" label="Plot only every nth point" help="Increases performance at the cost of resolution." />
        <expand macro="plot_options" />